PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr3	9791621	9791696	CAGE_peak_2_at_OGG1_5end
chr3	9791731	9791753	CAGE_peak_3_at_OGG1_5end
chr3	9791787	9791796	CAGE_peak_7_at_OGG1_5end
chr3	9791936	9792006	CAGE_peak_1_at_OGG1_5end
chr3	9792007	9792027	CAGE_peak_4_at_OGG1_5end
chr3	9792040	9792050	CAGE_peak_5_at_OGG1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I010505	10505813	10508616	0.87	[{'connected_gene': 'TATDN2', 'score': 12.98}, {'connected_gene': 'EMC3-AS1', 'score': 12.79}, {'connected_gene': 'OGG1', 'score': 10.49}, {'connected_gene': 'GC03M010552', 'score': 0.25}, {'connected_gene': 'GC03P010586', 'score': 0.18}, {'connected_gene': 'ATP2B2', 'score': 0.08}]
chr3	GH03I009768	9768194	9771286	1.94	[{'connected_gene': 'CAMK1', 'score': 550.77}, {'connected_gene': 'BRK1', 'score': 12.82}, {'connected_gene': 'PRRT3', 'score': 11.21}, {'connected_gene': 'TTLL3', 'score': 9.62}, {'connected_gene': 'RPUSD3', 'score': 6.55}, {'connected_gene': 'OGG1', 'score': 0.37}]
chr3	GH03I009861	9861190	9866062	1.62	[{'connected_gene': 'IL17RC', 'score': 37.28}, {'connected_gene': 'JAGN1', 'score': 33.62}, {'connected_gene': 'CIDEC', 'score': 25.99}, {'connected_gene': 'TADA3', 'score': 14.1}, {'connected_gene': 'IL17RE', 'score': 13.67}, {'connected_gene': 'FANCD2', 'score': 13.55}, {'connected_gene': 'ARPC4', 'score': 12.18}, {'connected_gene': 'RNU6-882P', 'score': 11.98}, {'connected_gene': 'THUMPD3', 'score': 11.85}, {'connected_gene': 'TTLL3', 'score': 11.12}, {'connected_gene': 'BRPF1', 'score': 11.06}, {'connected_gene': 'ARPC4-TTLL3', 'score': 10.72}, {'connected_gene': 'CAMK1', 'score': 10.51}, {'connected_gene': 'CPNE9', 'score': 10.32}, {'connected_gene': 'FANCD2OS', 'score': 10.28}, {'connected_gene': 'CRELD1', 'score': 6.65}, {'connected_gene': 'RPUSD3', 'score': 1.77}, {'connected_gene': 'OGG1', 'score': 1.31}, {'connected_gene': 'MARK2P1', 'score': 0.44}, {'connected_gene': 'GC03M009835', 'score': 0.23}]
chr3	GH03I009394	9394089	9403893	2.34	[{'connected_gene': 'SETD5', 'score': 635.98}, {'connected_gene': 'THUMPD3-AS1', 'score': 577.65}, {'connected_gene': 'GC03P009403', 'score': 550.77}, {'connected_gene': 'BRPF1', 'score': 126.97}, {'connected_gene': 'RAD18', 'score': 89.41}, {'connected_gene': 'GHRLOS', 'score': 40.99}, {'connected_gene': 'TTLL3', 'score': 40.01}, {'connected_gene': 'FANCD2', 'score': 39.59}, {'connected_gene': 'JAGN1', 'score': 31.13}, {'connected_gene': 'SEC13', 'score': 29.09}, {'connected_gene': 'SRGAP3', 'score': 21.03}, {'connected_gene': 'THUMPD3', 'score': 20.58}, {'connected_gene': 'LINC00852', 'score': 18.9}, {'connected_gene': 'TATDN2', 'score': 12.94}, {'connected_gene': 'EMC3-AS1', 'score': 12.79}, {'connected_gene': 'BRK1', 'score': 11.02}, {'connected_gene': 'ENSG00000269886', 'score': 10.92}, {'connected_gene': 'RPUSD3', 'score': 10.77}, {'connected_gene': 'OGG1', 'score': 10.51}]
chr3	GH03I009751	9751814	9751854	0.46	[{'connected_gene': 'OGG1', 'score': 550.77}, {'connected_gene': 'CAMK1', 'score': 0.37}]
chr3	GH03I009752	9752047	9752587	0.52	[{'connected_gene': 'OGG1', 'score': 0.77}, {'connected_gene': 'CAMK1', 'score': 0.37}]
chr3	GH03I009745	9745710	9751629	2.08	[{'connected_gene': 'OGG1', 'score': 550.77}, {'connected_gene': 'BRPF1', 'score': 20.14}, {'connected_gene': 'GHRLOS', 'score': 13.13}, {'connected_gene': 'RAD18', 'score': 11.74}, {'connected_gene': 'SETD5', 'score': 11.09}, {'connected_gene': 'SEC13', 'score': 10.95}, {'connected_gene': 'THUMPD3-AS1', 'score': 9.94}, {'connected_gene': 'FANCD2', 'score': 9.7}, {'connected_gene': 'TADA3', 'score': 6.28}, {'connected_gene': 'ARPC4', 'score': 5.23}, {'connected_gene': 'RPUSD3', 'score': 4.77}]
chr3	GH03I009787	9787354	9788129	0.6	[{'connected_gene': 'TTLL3', 'score': 10.14}, {'connected_gene': 'ARPC4', 'score': 0.77}, {'connected_gene': 'TADA3', 'score': 0.44}, {'connected_gene': 'CAMK1', 'score': 0.37}, {'connected_gene': 'OGG1', 'score': 0.28}]
chr3	GH03I010188	10188774	10200915	1.86	[{'connected_gene': 'BRPF1', 'score': 82.83}, {'connected_gene': 'SETD5', 'score': 73.25}, {'connected_gene': 'IRAK2', 'score': 60.93}, {'connected_gene': 'GHRLOS', 'score': 48.14}, {'connected_gene': 'LINC00852', 'score': 30.38}, {'connected_gene': 'TATDN2', 'score': 26.94}, {'connected_gene': 'FANCD2', 'score': 22.57}, {'connected_gene': 'GHRL', 'score': 19.15}, {'connected_gene': 'TTLL3', 'score': 18.85}, {'connected_gene': 'SEC13', 'score': 18.54}, {'connected_gene': 'VHL', 'score': 18.5}, {'connected_gene': 'JAGN1', 'score': 13.72}, {'connected_gene': 'EMC3-AS1', 'score': 12.84}, {'connected_gene': 'CYCSP10', 'score': 12.78}, {'connected_gene': 'ENSG00000206567', 'score': 11.58}, {'connected_gene': 'THUMPD3', 'score': 11.34}, {'connected_gene': 'FANCD2OS', 'score': 11.3}, {'connected_gene': 'PRRT3', 'score': 11.19}, {'connected_gene': 'BRK1', 'score': 10.76}, {'connected_gene': 'ENSG00000269894', 'score': 10.57}, {'connected_gene': 'OGG1', 'score': 10.5}, {'connected_gene': 'RPUSD3', 'score': 10.16}, {'connected_gene': 'THUMPD3-AS1', 'score': 10.12}, {'connected_gene': 'CAMK1', 'score': 5.94}, {'connected_gene': 'ARPC4', 'score': 1.57}, {'connected_gene': 'GC03M010202', 'score': 0.39}]
chr3	GH03I009730	9730529	9733538	2.12	[{'connected_gene': 'BRPF1', 'score': 592.73}, {'connected_gene': 'SETD5', 'score': 71.58}, {'connected_gene': 'CYCSP10', 'score': 41.59}, {'connected_gene': 'THUMPD3-AS1', 'score': 35.01}, {'connected_gene': 'ENSG00000269886', 'score': 28.48}, {'connected_gene': 'RAD18', 'score': 23.12}, {'connected_gene': 'EMC3-AS1', 'score': 19.14}, {'connected_gene': 'ENSG00000269894', 'score': 18.94}, {'connected_gene': 'FANCD2', 'score': 13.51}, {'connected_gene': 'ENSG00000269982', 'score': 13.31}, {'connected_gene': 'PRRT3', 'score': 11.19}, {'connected_gene': 'TADA3', 'score': 6.02}, {'connected_gene': 'RPUSD3', 'score': 5.02}, {'connected_gene': 'TTLL3', 'score': 4.69}, {'connected_gene': 'OGG1', 'score': 0.37}]
chr3	GH03I009777	9777842	9782400	1.01	[{'connected_gene': 'TADA3', 'score': 10.65}, {'connected_gene': 'TTLL3', 'score': 9.49}, {'connected_gene': 'RPUSD3', 'score': 5.7}, {'connected_gene': 'ARPC4', 'score': 0.39}, {'connected_gene': 'CAMK1', 'score': 0.39}, {'connected_gene': 'OGG1', 'score': 0.29}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000302003	[[9791627, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9798727, 9799091]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9798727, 9799012]]
ENST00000344629	[[9791627, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9798744, 9799197]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9798744, 9798834]]
ENST00000349503	[[9791627, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9807492, 9808352]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9807492, 9807819]]
ENST00000302036	[[9791627, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9807492, 9808421]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9807492, 9807819]]
ENST00000339511	[[9791664, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9799061]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798527]]
ENST00000436092	[[9791701, 9792107], [9792348, 9792756]]	None
ENST00000449570	[[9791755, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9800917, 9800970], [9807492, 9808224]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9800917, 9800938]]
ENST00000302008	[[9791756, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9800870, 9800970], [9807492, 9808421]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9800870, 9800970], [9807492, 9807515]]
ENST00000425665	[[9791766, 9792107], [9798154, 9798305], [9798450, 9798888]]	[[9791970, 9792107], [9798154, 9798176]]
ENST00000383826	[[9791770, 9792107], [9792628, 9792876], [9793453, 9793633], [9807492, 9807796]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9807492, 9807515]]
ENST00000441094	[[9792029, 9792107], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798719]]	[[9792029, 9792107], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798527]]
ENST00000429146	[[9792038, 9792107], [9792628, 9792876], [9793453, 9793633], [9798154, 9798305], [9798450, 9798549]]	[[9792038, 9792107], [9792628, 9792876], [9793453, 9793633], [9798154, 9798162]]
ENST00000432857	[[9792647, 9792876], [9793453, 9793778]]	None
ENST00000426518	[[9792762, 9792876], [9793453, 9793633], [9823196, 9823284], [9829411, 9829903]]	[[9792762, 9792876], [9793453, 9793633], [9823196, 9823284], [9829411, 9829415]]
ENST00000352937	[[9792775, 9792876], [9793453, 9793633], [9796387, 9796569], [9807492, 9808421]]	[[9792775, 9792876], [9793453, 9793633], [9796387, 9796569], [9807492, 9807819]]
ENST00000416333	[[9793586, 9793633], [9798154, 9798305], [9798450, 9798500], [9798727, 9798875]]	[[9793586, 9793633], [9798154, 9798305], [9798450, 9798500], [9798727, 9798875]]
ENST00000383825	[[9793586, 9793633], [9798450, 9798875]]	None
ENST00000602976	[[9799031, 9804008]]	None
NM_002542	[[9791627, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9798744, 9799091]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9798744, 9798834]]
NM_016820	[[9791627, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9798727, 9799091]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9798727, 9799012]]
NM_016819	[[9791627, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9799091]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798527]]
NM_016827	[[9791627, 9792107], [9792628, 9792876], [9793453, 9793633], [9807492, 9808353]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9807492, 9807515]]
NM_016826	[[9791627, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9807492, 9808353]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9807492, 9807819]]
NM_016821	[[9791627, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9807492, 9808353]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9807492, 9807819]]
NM_016829	[[9791627, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9800917, 9800970], [9807492, 9808353]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9800917, 9800938]]
NM_016828	[[9791627, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9800870, 9800970], [9807492, 9808353]]	[[9791970, 9792107], [9792628, 9792876], [9793453, 9793633], [9796387, 9796569], [9798154, 9798305], [9798450, 9798500], [9800870, 9800970], [9807492, 9807515]]