PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000271835	[[152381718, 152383419], [152384571, 152384722], [152386689, 152386739]]	[[152382069, 152383419], [152384571, 152384709]]
NM_016190	[[152381718, 152383419], [152384571, 152384722], [152386689, 152386750]]	[[152382069, 152383419], [152384571, 152384709]]

Promoter

Chrom	Start	End	Description
chr1	152386732	152386745	CAGE_peak_1_at_CRNN_5end
chr1	152386747	152386752	CAGE_peak_2_at_CRNN_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I152501	152501203	152504185	0.57	[{'connected_gene': 'RORC', 'score': 5.67}, {'connected_gene': 'CRNN', 'score': 5.38}, {'connected_gene': 'LCE5A', 'score': 0.44}, {'connected_gene': 'PIR42758', 'score': 0.18}]
chr1	GH01I152459	152459582	152461024	0.95	[{'connected_gene': 'CRCT1', 'score': 10.36}, {'connected_gene': 'LCE5A', 'score': 10.27}, {'connected_gene': 'S100A11', 'score': 10.06}, {'connected_gene': 'RPTN', 'score': 9.31}, {'connected_gene': 'CRNN', 'score': 6.08}, {'connected_gene': 'PIR42758', 'score': 0.28}]
chr1	GH01I152412	152412731	152413709	0.2	[{'connected_gene': 'CRNN', 'score': 550.77}, {'connected_gene': 'FLG2', 'score': 9.99}, {'connected_gene': 'FLG', 'score': 9.01}, {'connected_gene': 'GC01P152408', 'score': 0.77}, {'connected_gene': 'FLG-AS1', 'score': 0.07}]
chr1	GH01I152414	152414253	152414312	0.7	[{'connected_gene': 'CRNN', 'score': 550.77}, {'connected_gene': 'GC01P152408', 'score': 0.44}, {'connected_gene': 'PIR42758', 'score': 0.44}, {'connected_gene': 'FLG-AS1', 'score': 0.07}]
chr1	GH01I152440	152440965	152441114	0.89	[{'connected_gene': 'CRNN', 'score': 6.25}, {'connected_gene': 'PIR42758', 'score': 0.34}, {'connected_gene': 'LCE5A', 'score': 0.2}, {'connected_gene': 'FLG-AS1', 'score': 0.06}]
chr1	GH01I152480	152480185	152480334	0.38	[{'connected_gene': 'LCE5A', 'score': 11.15}, {'connected_gene': 'CRCT1', 'score': 11.14}, {'connected_gene': 'LCE3A', 'score': 10.03}, {'connected_gene': 'LCE3D', 'score': 9.88}, {'connected_gene': 'HRNR', 'score': 9.57}, {'connected_gene': 'CRNN', 'score': 5.86}, {'connected_gene': 'PIR42758', 'score': 0.22}]
chr1	GH01I152446	152446218	152451632	0.38	[{'connected_gene': 'FLG', 'score': 17.39}, {'connected_gene': 'S100A11', 'score': 14.89}, {'connected_gene': 'CRNN', 'score': 13.2}, {'connected_gene': 'FLG2', 'score': 10.28}, {'connected_gene': 'HRNR', 'score': 10.1}, {'connected_gene': 'FLG-AS1', 'score': 5.23}, {'connected_gene': 'PIR42758', 'score': 0.31}, {'connected_gene': 'LCE5A', 'score': 0.21}]
chr1	GH01I152426	152426925	152428489	0.31	[{'connected_gene': 'FLG', 'score': 15.98}, {'connected_gene': 'CRNN', 'score': 13.12}, {'connected_gene': 'FLG2', 'score': 10.66}, {'connected_gene': 'HRNR', 'score': 9.83}, {'connected_gene': 'RPTN', 'score': 9.71}, {'connected_gene': 'PIR42758', 'score': 0.44}, {'connected_gene': 'LCE5A', 'score': 0.18}, {'connected_gene': 'FLG-AS1', 'score': 0.07}]
chr1	GH01I152409	152409438	152412682	0.31	[{'connected_gene': 'FLG', 'score': 15.09}, {'connected_gene': 'CRNN', 'score': 11.14}, {'connected_gene': 'FLG2', 'score': 9.99}, {'connected_gene': 'FLG-AS1', 'score': 6.18}, {'connected_gene': 'GC01P152408', 'score': 0.77}]
chr1	GH01I152436	152436852	152439397	0.2	[{'connected_gene': 'FLG', 'score': 16.2}, {'connected_gene': 'CRNN', 'score': 13.22}, {'connected_gene': 'PIR42758', 'score': 0.37}, {'connected_gene': 'LCE5A', 'score': 0.19}, {'connected_gene': 'FLG-AS1', 'score': 0.06}]
chr1	GH01I152487	152487516	152488862	0.2	[{'connected_gene': 'THEM4', 'score': 5.41}, {'connected_gene': 'CRNN', 'score': 4.53}, {'connected_gene': 'LCE5A', 'score': 0.34}, {'connected_gene': 'PIR42758', 'score': 0.2}]
chr1	GH01I152417	152417723	152420776	0.31	[{'connected_gene': 'PIR42758', 'score': 550.77}, {'connected_gene': 'CRNN', 'score': 13.35}, {'connected_gene': 'FLG', 'score': 6.35}, {'connected_gene': 'FLG-AS1', 'score': 0.07}]