PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000410009	[[71057346, 71058331], [71058831, 71058950], [71060030, 71060182], [71060776, 71061151], [71062621, 71062738], [71062833, 71062952]]	[[71058180, 71058331], [71058831, 71058950], [71060030, 71060182], [71060776, 71061151], [71062621, 71062738], [71062833, 71062906]]
NM_015717	[[71057342, 71058331], [71058831, 71058950], [71060030, 71060182], [71060776, 71061151], [71062621, 71062740], [71062835, 71062953]]	[[71058180, 71058331], [71058831, 71058950], [71060030, 71060182], [71060776, 71061151], [71062621, 71062740], [71062835, 71062906]]

Promoter

Chrom	Start	End	Description
chr2	71062938	71062952	CAGE_peak_1_at_CD207_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I070139	70139132	70144599	1.55	[{'connected_gene': 'TIA1', 'score': 25.75}, {'connected_gene': 'TEX261', 'score': 22.5}, {'connected_gene': 'MPHOSPH10', 'score': 12.82}, {'connected_gene': 'ANKRD53', 'score': 12.36}, {'connected_gene': 'CLEC4F', 'score': 12.29}, {'connected_gene': 'PCBP1-AS1', 'score': 11.46}, {'connected_gene': 'FAM136A', 'score': 11.26}, {'connected_gene': 'ASPRV1', 'score': 11.0}, {'connected_gene': 'CD207', 'score': 10.41}, {'connected_gene': 'PCYOX1', 'score': 9.86}, {'connected_gene': 'LINC01816', 'score': 0.37}, {'connected_gene': 'GC02P070210', 'score': 0.2}, {'connected_gene': 'GC02P069822', 'score': 0.06}]
chr2	GH02I070551	70551286	70555424	2.12	[{'connected_gene': 'TGFA', 'score': 559.23}, {'connected_gene': 'CLEC4F', 'score': 13.87}, {'connected_gene': 'TIA1', 'score': 13.57}, {'connected_gene': 'TEX261', 'score': 11.62}, {'connected_gene': 'PCBP1-AS1', 'score': 11.47}, {'connected_gene': 'CD207', 'score': 11.26}, {'connected_gene': 'VAX2', 'score': 9.69}, {'connected_gene': 'TGFA-IT1', 'score': 0.19}]
chr2	GH02I070291	70291167	70295237	2.1	[{'connected_gene': 'SNRPG', 'score': 550.77}, {'connected_gene': 'PCBP1-AS1', 'score': 34.02}, {'connected_gene': 'CLEC4F', 'score': 32.44}, {'connected_gene': 'TEX261', 'score': 30.91}, {'connected_gene': 'TIA1', 'score': 28.03}, {'connected_gene': 'GMCL1', 'score': 21.23}, {'connected_gene': 'PCYOX1', 'score': 13.45}, {'connected_gene': 'C2orf42', 'score': 11.83}, {'connected_gene': 'NAGK', 'score': 10.52}, {'connected_gene': 'CD207', 'score': 10.41}, {'connected_gene': 'ANKRD53', 'score': 10.09}, {'connected_gene': 'FAM136A', 'score': 5.02}, {'connected_gene': 'GC02P070271', 'score': 0.34}]
chr2	GH02I070509	70509615	70510944	0.99	[{'connected_gene': 'CD207', 'score': 13.76}, {'connected_gene': 'TGFA', 'score': 11.48}, {'connected_gene': 'ASPRV1', 'score': 4.41}, {'connected_gene': 'FIGLA', 'score': 1.47}, {'connected_gene': 'TGFA-IT1', 'score': 0.31}]
chr2	GH02I070850	70850867	70852500	0.82	[{'connected_gene': 'CD207', 'score': 39.72}, {'connected_gene': 'VAX2', 'score': 11.56}, {'connected_gene': 'ATP6V1B1', 'score': 11.25}, {'connected_gene': 'ATP6V1B1-AS1', 'score': 11.17}, {'connected_gene': 'ADD2', 'score': 10.37}, {'connected_gene': 'FIGLA', 'score': 1.36}, {'connected_gene': 'LINC01143', 'score': 0.28}]
chr2	GH02I070835	70835806	70835865	0.87	[{'connected_gene': 'CD207', 'score': 550.77}, {'connected_gene': 'CLEC4F', 'score': 0.39}]
chr2	GH02I070861	70861931	70862080	0.76	[{'connected_gene': 'CD207', 'score': 0.31}, {'connected_gene': 'LINC01143', 'score': 0.31}]
chr2	GH02I071275	71275920	71278295	1.47	[{'connected_gene': 'ZNF638', 'score': 567.3}, {'connected_gene': 'LOC105374797', 'score': 550.77}, {'connected_gene': 'CLEC4F', 'score': 12.31}, {'connected_gene': 'TEX261', 'score': 11.83}, {'connected_gene': 'CD207', 'score': 10.43}, {'connected_gene': 'PAIP2B', 'score': 7.98}, {'connected_gene': 'OR7E91P', 'score': 5.0}, {'connected_gene': 'ENSG00000281195', 'score': 0.15}]
chr2	GH02I070828	70828401	70828600	0.38	[{'connected_gene': 'CLEC4F', 'score': 24.57}, {'connected_gene': 'ATP6V1B1-AS1', 'score': 10.66}, {'connected_gene': 'ADD2', 'score': 10.42}, {'connected_gene': 'CD207', 'score': 0.44}]
chr2	GH02I070827	70827201	70827600	0.43	[{'connected_gene': 'CLEC4F', 'score': 37.19}, {'connected_gene': 'ATP6V1B1-AS1', 'score': 10.66}, {'connected_gene': 'ADD2', 'score': 10.43}, {'connected_gene': 'CD207', 'score': 0.44}]
chr2	GH02I070871	70871419	70872056	1.07	[{'connected_gene': 'LINC01143', 'score': 0.37}, {'connected_gene': 'CD207', 'score': 0.28}]
chr2	GH02I070919	70919951	70920100	0.89	[{'connected_gene': 'ATP6V1B1-AS1', 'score': 12.27}, {'connected_gene': 'ADD2', 'score': 10.53}, {'connected_gene': 'CD207', 'score': 10.49}, {'connected_gene': 'ATP6V1B1', 'score': 0.37}, {'connected_gene': 'VAX2', 'score': 0.37}]