PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000366898	[[161768451, 161771243], [161781119, 161781237], [161807825, 161807909], [161969885, 161970035], [161990386, 161990448], [162206803, 162206940], [162394333, 162394449], [162475122, 162475206], [162622162, 162622284], [162683556, 162683797], [162864341, 162864505], [163148693, 163148803]]	[[161771130, 161771243], [161781119, 161781237], [161807825, 161807909], [161969885, 161970035], [161990386, 161990448], [162206803, 162206940], [162394333, 162394449], [162475122, 162475206], [162622162, 162622284], [162683556, 162683797], [162864341, 162864505], [163148693, 163148700]]
ENST00000366897	[[161769670, 161771243], [161781119, 161781237], [161807825, 161807909], [161969885, 161970035], [161990386, 161990448], [162206803, 162206940], [162394333, 162394449], [162622162, 162622284], [162683556, 162683797], [162864341, 162864505], [163148693, 163148803]]	[[161771130, 161771243], [161781119, 161781237], [161807825, 161807909], [161969885, 161970035], [161990386, 161990448], [162206803, 162206940], [162394333, 162394449], [162622162, 162622284], [162683556, 162683797], [162864341, 162864505], [163148693, 163148700]]
ENST00000366896	[[161769670, 161771243], [161781119, 161781237], [161807825, 161807909], [161969885, 161970035], [161990386, 161990448], [162206803, 162206940], [162394333, 162394449], [162864341, 162864505], [163148693, 163148803]]	[[161771130, 161771243], [161781119, 161781237], [161807825, 161807909], [161969885, 161970035], [161990386, 161990448], [162206803, 162206940], [162394333, 162394449], [162864341, 162864505], [163148693, 163148700]]
ENST00000479615	[[161771130, 161771243], [161807825, 161807909], [162206803, 162206940], [162394333, 162394449], [162475122, 162475206], [162622162, 162622284], [162683556, 162683797], [163148693, 163148700]]	[[161807886, 161807909], [162206803, 162206940], [162394333, 162394449], [162475122, 162475206], [162622162, 162622284], [162683556, 162683731]]
ENST00000366894	[[161771130, 161771243], [161781119, 161781237], [161807825, 161807909], [161969885, 161970035], [161990386, 161990448], [162206803, 162206940], [162394333, 162394449], [162475122, 162475206], [162622162, 162622284], [162864341, 162864505], [163148693, 163148700]]	[[161771130, 161771243], [161781119, 161781237], [161807825, 161807909], [161969885, 161970035], [161990386, 161990448], [162206803, 162206940], [162394333, 162394449], [162475122, 162475167]]
ENST00000338468	[[161771130, 161771243], [161781119, 161781237], [161807825, 161807909], [161969885, 161970035], [161990386, 161990448], [162206803, 162206940], [162394333, 162394449], [162475122, 162475206], [162683556, 162683797], [162864341, 162864505], [163148693, 163148700]]	[[161771130, 161771243], [161781119, 161781237], [161807825, 161807909], [161969885, 161970035], [161990386, 161990448], [162206803, 162206940], [162394333, 162394449], [162475122, 162475167]]
ENST00000366892	[[161966143, 161966469], [161969885, 161970035], [161990386, 161990448], [162206803, 162206940], [162394333, 162394449], [162475122, 162475206], [162622162, 162622284], [162683556, 162683797], [162864341, 162864505], [163148693, 163148796]]	[[161966445, 161966469], [161969885, 161970035], [161990386, 161990448], [162206803, 162206940], [162394333, 162394449], [162475122, 162475206], [162622162, 162622284], [162683556, 162683797], [162864341, 162864505], [163148693, 163148700]]

Promoter

Chrom	Start	End	Description
chr6	163148729	163148740	CAGE_peak_3_at_PARK2_5end
chr6	163148760	163148773	CAGE_peak_2_at_PARK2_5end
chr6	163148780	163148813	CAGE_peak_1_at_PARK2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I163148	163148828	163149061	0.51	[{'connected_gene': 'PACRG-AS3', 'score': 11.45}, {'connected_gene': 'QKI', 'score': 7.6}, {'connected_gene': 'PRKN', 'score': 3.68}, {'connected_gene': 'PACRG', 'score': 1.98}, {'connected_gene': 'PACRG-AS2', 'score': 0.16}]
chr6	GH06I162733	162733601	162733800	0.38	[{'connected_gene': 'PRKN', 'score': 0.44}, {'connected_gene': 'PACRG', 'score': 0.44}, {'connected_gene': 'TRE-TTC15-1', 'score': 0.22}]
chr6	GH06I162683	162683414	162684838	0.2	[{'connected_gene': 'PRKN', 'score': 0.26}, {'connected_gene': 'PACRG', 'score': 0.26}, {'connected_gene': 'KRT8P44', 'score': 0.13}]
chr6	GH06I162684	162684946	162686017	0.2	[{'connected_gene': 'PRKN', 'score': 0.26}, {'connected_gene': 'PACRG', 'score': 0.26}, {'connected_gene': 'KRT8P44', 'score': 0.13}]
chr6	GH06I162686	162686696	162686986	0.25	[{'connected_gene': 'PRKN', 'score': 3.36}, {'connected_gene': 'PACRG', 'score': 1.68}, {'connected_gene': 'KRT8P44', 'score': 0.13}]
chr6	GH06I162677	162677462	162677481	0.22	[{'connected_gene': 'PRKN', 'score': 3.98}, {'connected_gene': 'PACRG', 'score': 2.54}, {'connected_gene': 'KRT8P44', 'score': 0.14}]
chr6	GH06I162364	162364089	162364976	0.84	[{'connected_gene': 'PACRG', 'score': 4.61}, {'connected_gene': 'PRKN', 'score': 4.52}, {'connected_gene': 'LOC105369171', 'score': 0.22}, {'connected_gene': 'LOC105378097', 'score': 0.13}]
chr6	GH06I162810	162810001	162810111	0.22	[{'connected_gene': 'PACRG', 'score': 4.57}, {'connected_gene': 'PRKN', 'score': 2.15}, {'connected_gene': 'TRE-TTC15-1', 'score': 0.34}, {'connected_gene': 'GC06P162885', 'score': 0.18}]
chr6	GH06I162726	162726801	162729029	2.01	[{'connected_gene': 'PACRG', 'score': 576.35}, {'connected_gene': 'PRKN', 'score': 550.77}, {'connected_gene': 'TRE-TTC15-1', 'score': 0.21}]
chr6	GH06I162705	162705769	162706958	0.63	[{'connected_gene': 'PACRG', 'score': 37.42}, {'connected_gene': 'PRKN', 'score': 12.14}, {'connected_gene': 'KRT8P44', 'score': 0.12}]
chr6	GH06I162409	162409142	162411014	0.2	[{'connected_gene': 'PACRG', 'score': 4.92}, {'connected_gene': 'LOC105369171', 'score': 0.39}, {'connected_gene': 'LOC105378097', 'score': 0.1}, {'connected_gene': 'PRKN', 'score': 0.06}]
chr6	GH06I162543	162543329	162543478	0.2	[{'connected_gene': 'PACRG', 'score': 4.6}, {'connected_gene': 'KRT8P44', 'score': 0.34}, {'connected_gene': 'LOC105369171', 'score': 0.13}, {'connected_gene': 'PRKN', 'score': 0.09}]
chr6	GH06I162538	162538580	162539193	0.57	[{'connected_gene': 'PACRG', 'score': 5.18}, {'connected_gene': 'KRT8P44', 'score': 0.31}, {'connected_gene': 'LOC105369171', 'score': 0.13}, {'connected_gene': 'PRKN', 'score': 0.09}]
chr6	GH06I162290	162290328	162291614	0.2	[{'connected_gene': 'LOC105378097', 'score': 0.22}, {'connected_gene': 'LOC105369171', 'score': 0.12}, {'connected_gene': 'PRKN', 'score': 0.05}]
chr6	GH06I162267	162267749	162267898	0.2	[{'connected_gene': 'LOC105378097', 'score': 0.29}, {'connected_gene': 'LOC105369171', 'score': 0.1}, {'connected_gene': 'PRKN', 'score': 0.05}]
chr6	GH06I162293	162293649	162294468	0.31	[{'connected_gene': 'LOC105378097', 'score': 0.22}, {'connected_gene': 'LOC105369171', 'score': 0.13}, {'connected_gene': 'PRKN', 'score': 0.04}]
chr6	GH06I162363	162363889	162364038	0.46	[{'connected_gene': 'LOC105369171', 'score': 0.22}, {'connected_gene': 'LOC105378097', 'score': 0.13}, {'connected_gene': 'PRKN', 'score': 0.05}]
chr6	GH06I162390	162390452	162392542	0.49	[{'connected_gene': 'LOC105369171', 'score': 0.29}, {'connected_gene': 'LOC105378097', 'score': 0.1}, {'connected_gene': 'PRKN', 'score': 0.05}]
chr6	GH06I162344	162344024	162346071	0.31	[{'connected_gene': 'LOC105369171', 'score': 0.18}, {'connected_gene': 'LOC105378097', 'score': 0.14}, {'connected_gene': 'PRKN', 'score': 0.05}]
chr6	GH06I162416	162416612	162417758	0.46	[{'connected_gene': 'LOC105369171', 'score': 0.44}, {'connected_gene': 'LOC105378097', 'score': 0.09}, {'connected_gene': 'PRKN', 'score': 0.06}]
chr6	GH06I162477	162477723	162478875	0.46	[{'connected_gene': 'LOC105369171', 'score': 0.22}, {'connected_gene': 'KRT8P44', 'score': 0.16}, {'connected_gene': 'PRKN', 'score': 0.07}]
chr6	GH06I162448	162448087	162448204	0.22	[{'connected_gene': 'LOC105369171', 'score': 0.31}, {'connected_gene': 'KRT8P44', 'score': 0.13}, {'connected_gene': 'PRKN', 'score': 0.06}]
chr6	GH06I162442	162442809	162442938	0.43	[{'connected_gene': 'LOC105369171', 'score': 0.34}, {'connected_gene': 'KRT8P44', 'score': 0.13}, {'connected_gene': 'PRKN', 'score': 0.06}]
chr6	GH06I162625	162625810	162626668	0.31	[{'connected_gene': 'KRT8P44', 'score': 0.22}, {'connected_gene': 'PRKN', 'score': 0.15}, {'connected_gene': 'PACRG', 'score': 0.15}]
chr6	GH06I162524	162524860	162525715	0.2	[{'connected_gene': 'KRT8P44', 'score': 0.26}, {'connected_gene': 'LOC105369171', 'score': 0.15}, {'connected_gene': 'PRKN', 'score': 0.08}]
chr6	GH06I162090	162090508	162091334	0.2	[{'connected_gene': 'PIR50957', 'score': 0.17}, {'connected_gene': 'GC06P161835', 'score': 0.07}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I162099	162099091	162100778	0.92	[{'connected_gene': 'PIR50957', 'score': 0.18}, {'connected_gene': 'GC06P161835', 'score': 0.07}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I162059	162057246	162057366	0.44	[{'connected_gene': 'PIR50957', 'score': 0.13}, {'connected_gene': 'GC06P161835', 'score': 0.07}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I161917	161917749	161917898	0.46	[{'connected_gene': 'GC06P161835', 'score': 0.18}, {'connected_gene': 'PIR50957', 'score': 0.07}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I161922	161922180	161923558	1.06	[{'connected_gene': 'GC06P161835', 'score': 0.17}, {'connected_gene': 'PIR50957', 'score': 0.07}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I162156	162156279	162156447	0.22	[{'connected_gene': 'PIR50957', 'score': 0.34}, {'connected_gene': 'GC06P161835', 'score': 0.05}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I161923	161923933	161924054	0.2	[{'connected_gene': 'GC06P161835', 'score': 0.17}, {'connected_gene': 'PIR50957', 'score': 0.07}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I162150	162150894	162151748	0.67	[{'connected_gene': 'PIR50957', 'score': 0.31}, {'connected_gene': 'GC06P161835', 'score': 0.06}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I162106	162106746	162106896	0.22	[{'connected_gene': 'PIR50957', 'score': 0.19}, {'connected_gene': 'GC06P161835', 'score': 0.06}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I161963	161963782	161964139	0.31	[{'connected_gene': 'GC06P161835', 'score': 0.13}, {'connected_gene': 'PIR50957', 'score': 0.08}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I162119	162119373	162119848	0.71	[{'connected_gene': 'PIR50957', 'score': 0.22}, {'connected_gene': 'GC06P161835', 'score': 0.06}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I162056	162056001	162056200	0.57	[{'connected_gene': 'PIR50957', 'score': 0.13}, {'connected_gene': 'GC06P161835', 'score': 0.07}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I162154	162154163	162154289	0.27	[{'connected_gene': 'PIR50957', 'score': 0.34}, {'connected_gene': 'GC06P161835', 'score': 0.06}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I161748	161748889	161749038	0.49	[{'connected_gene': 'GC06P161685', 'score': 0.21}, {'connected_gene': 'GC06P161835', 'score': 0.17}, {'connected_gene': 'PRKN', 'score': 0.02}]
chr6	GH06I162057	162056849	162057058	0.38	[{'connected_gene': 'PIR50957', 'score': 0.13}, {'connected_gene': 'GC06P161835', 'score': 0.07}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I161918	161918349	161918498	0.54	[{'connected_gene': 'GC06P161835', 'score': 0.18}, {'connected_gene': 'PIR50957', 'score': 0.07}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I161908	161908871	161909126	0.22	[{'connected_gene': 'GC06P161835', 'score': 0.19}, {'connected_gene': 'PIR50957', 'score': 0.06}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I162058	162058277	162059138	0.92	[{'connected_gene': 'PIR50957', 'score': 0.13}, {'connected_gene': 'GC06P161835', 'score': 0.07}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I161838	161838789	161839038	0.62	[{'connected_gene': 'GC06P161835', 'score': 0.77}, {'connected_gene': 'PIR50957', 'score': 0.05}, {'connected_gene': 'PRKN', 'score': 0.02}]
chr6	GH06I161828	161828221	161829972	0.31	[{'connected_gene': 'GC06P161835', 'score': 0.44}, {'connected_gene': 'GC06P161685', 'score': 0.11}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I162109	162109635	162110023	0.28	[{'connected_gene': 'PIR50957', 'score': 0.2}, {'connected_gene': 'GC06P161835', 'score': 0.06}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I161773	161773869	161774812	0.57	[{'connected_gene': 'GC06P161835', 'score': 0.21}, {'connected_gene': 'GC06P161685', 'score': 0.17}, {'connected_gene': 'PRKN', 'score': 0.02}]
chr6	GH06I162202	162202754	162203093	0.22	[{'connected_gene': 'PIR50957', 'score': 0.34}, {'connected_gene': 'LOC105378097', 'score': 0.29}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I162181	162181244	162181379	0.26	[{'connected_gene': 'PIR50957', 'score': 0.77}, {'connected_gene': 'LOC105378097', 'score': 0.23}, {'connected_gene': 'PRKN', 'score': 0.03}]
chr6	GH06I162182	162181713	162182268	0.86	[{'connected_gene': 'PIR50957', 'score': 0.77}, {'connected_gene': 'LOC105378097', 'score': 0.23}, {'connected_gene': 'PRKN', 'score': 0.03}]