PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000544246	[[66876966, 66879160], [67205341, 67205543], [67477635, 67477737], [67799536, 67802707], [67803911, 67804468]]	[[66878786, 66879160], [67205341, 67205543], [67477635, 67477737], [67799536, 67802572]]
ENST00000377865	[[66876968, 66879160], [67205341, 67205543], [67477635, 67477737], [67799536, 67802707]]	[[66878786, 66879160], [67205341, 67205543], [67477635, 67477737], [67799536, 67802572]]
ENST00000456367	[[66877251, 66879160], [67205341, 67205543], [67799536, 67802707], [67803911, 67804463]]	[[66878786, 66879160], [67205341, 67205543], [67799536, 67802572]]
ENST00000328454	[[66878735, 66879160], [67205341, 67205543], [67799536, 67802572]]	[[66878786, 66879160], [67205341, 67205543], [67799536, 67802572]]
ENST00000377861	[[67798862, 67802707], [67803911, 67804463]]	[[67799473, 67802572]]
NM_203487	[[66876965, 66879160], [67205341, 67205543], [67477635, 67477737], [67799536, 67802707], [67803911, 67804468]]	[[66878786, 66879160], [67205341, 67205543], [67477635, 67477737], [67799536, 67802572]]
NM_001318372	[[66876965, 66879160], [67205341, 67205417], [67477635, 67477737], [67799536, 67802707], [67803911, 67804468]]	[[66878786, 66879160], [67205341, 67205417], [67477635, 67477737], [67799536, 67802572]]
NM_020403	[[66876965, 66879160], [67205341, 67205543], [67799536, 67802707], [67803911, 67804468]]	[[66878786, 66879160], [67205341, 67205543], [67799536, 67802572]]
NM_001318373	[[66876965, 66879160], [67205341, 67205417], [67799536, 67802707], [67803911, 67804468]]	[[66878786, 66879160], [67205341, 67205417], [67799536, 67802572]]
NM_001318374	[[67798638, 67802707], [67803911, 67804468]]	[[67799473, 67802572]]

Promoter

Chrom	Start	End	Description
chr13	67804445	67804475	CAGE_peak_1_at_PCDH9_5end
chr13	67804476	67804487	CAGE_peak_2_at_PCDH9_5end
chr13	67804509	67804520	CAGE_peak_3_at_PCDH9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I067057	67057792	67066279	0.67	[{'connected_gene': 'PCDH9', 'score': 11.28}, {'connected_gene': 'PCDH9-AS3', 'score': 10.72}, {'connected_gene': 'GC13M067082', 'score': 0.34}, {'connected_gene': 'GC13M066851', 'score': 0.21}]
chr13	GH13I067047	67047976	67049571	1.08	[{'connected_gene': 'PCDH9', 'score': 11.31}, {'connected_gene': 'PCDH9-AS3', 'score': 10.7}, {'connected_gene': 'GC13M067082', 'score': 0.28}, {'connected_gene': 'GC13M066851', 'score': 0.23}]
chr13	GH13I067051	67051893	67053643	0.31	[{'connected_gene': 'PCDH9', 'score': 19.66}, {'connected_gene': 'PCDH9-AS3', 'score': 10.64}, {'connected_gene': 'GC13M067082', 'score': 0.29}, {'connected_gene': 'GC13M066851', 'score': 0.23}]
chr13	GH13I067206	67206859	67211114	0.38	[{'connected_gene': 'PCDH9', 'score': 18.14}, {'connected_gene': 'PCDH9-AS3', 'score': 9.98}, {'connected_gene': 'GC13M067192', 'score': 0.34}, {'connected_gene': 'GC13P067116', 'score': 0.16}]
chr13	GH13I066883	66883549	66883876	0.22	[{'connected_gene': 'PCDH9', 'score': 4.65}, {'connected_gene': 'GC13M066891', 'score': 0.39}, {'connected_gene': 'PCDH9-AS2', 'score': 0.22}, {'connected_gene': 'GC13M066851', 'score': 0.14}]
chr13	GH13I067066	67066813	67067634	0.2	[{'connected_gene': 'PCDH9', 'score': 6.76}, {'connected_gene': 'GC13M067082', 'score': 0.37}, {'connected_gene': 'GC13M066851', 'score': 0.2}]
chr13	GH13I067095	67095689	67095838	0.66	[{'connected_gene': 'PCDH9', 'score': 10.6}, {'connected_gene': 'GC13M067082', 'score': 0.39}, {'connected_gene': 'GC13P067116', 'score': 0.34}]
chr13	GH13I067073	67073734	67078040	0.54	[{'connected_gene': 'PCDH9', 'score': 11.36}, {'connected_gene': 'GC13M067082', 'score': 0.44}, {'connected_gene': 'GC13M066851', 'score': 0.18}]
chr13	GH13I067106	67106042	67107245	0.2	[{'connected_gene': 'PCDH9', 'score': 7.43}, {'connected_gene': 'GC13P067116', 'score': 0.39}, {'connected_gene': 'GC13M067082', 'score': 0.34}]
chr13	GH13I067215	67215274	67220327	0.49	[{'connected_gene': 'PCDH9', 'score': 7.08}, {'connected_gene': 'GC13M067192', 'score': 0.37}, {'connected_gene': 'GC13P067116', 'score': 0.15}]
chr13	GH13I067099	67099151	67100238	0.2	[{'connected_gene': 'PCDH9', 'score': 10.77}, {'connected_gene': 'GC13M067082', 'score': 0.39}, {'connected_gene': 'GC13P067116', 'score': 0.37}]
chr13	GH13I067068	67068293	67073007	0.66	[{'connected_gene': 'PCDH9', 'score': 10.76}, {'connected_gene': 'GC13M067082', 'score': 0.39}, {'connected_gene': 'GC13M066851', 'score': 0.19}]
chr13	GH13I067085	67085030	67089408	0.52	[{'connected_gene': 'PCDH9', 'score': 10.77}, {'connected_gene': 'GC13M067082', 'score': 0.77}, {'connected_gene': 'GC13P067116', 'score': 0.31}]
chr13	GH13I067225	67225401	67225800	0.4	[{'connected_gene': 'PCDH9', 'score': 0.77}, {'connected_gene': 'GC13M067192', 'score': 0.44}, {'connected_gene': 'GC13P067116', 'score': 0.14}]
chr13	GH13I067223	67223935	67224599	1.28	[{'connected_gene': 'PCDH9', 'score': 8.49}, {'connected_gene': 'GC13M067192', 'score': 0.44}, {'connected_gene': 'GC13P067116', 'score': 0.14}]
chr13	GH13I067221	67221601	67222000	0.89	[{'connected_gene': 'PCDH9', 'score': 7.08}, {'connected_gene': 'GC13M067192', 'score': 0.39}, {'connected_gene': 'GC13P067116', 'score': 0.15}]
chr13	GH13I067120	67120769	67121621	0.92	[{'connected_gene': 'PCDH9', 'score': 4.78}, {'connected_gene': 'GC13P067116', 'score': 0.77}]
chr13	GH13I067155	67155990	67156255	0.56	[{'connected_gene': 'PCDH9', 'score': 16.46}, {'connected_gene': 'GC13P067116', 'score': 0.28}]
chr13	GH13I067134	67134201	67135000	0.89	[{'connected_gene': 'PCDH9', 'score': 4.88}, {'connected_gene': 'GC13P067116', 'score': 0.37}]
chr13	GH13I067129	67129846	67132751	0.72	[{'connected_gene': 'PCDH9', 'score': 4.88}, {'connected_gene': 'GC13P067116', 'score': 0.39}]
chr13	GH13I067157	67157588	67159950	0.46	[{'connected_gene': 'PCDH9', 'score': 10.32}, {'connected_gene': 'GC13P067116', 'score': 0.26}]
chr13	GH13I067228	67228400	67232744	2.19	[{'connected_gene': 'PCDH9', 'score': 559.1}, {'connected_gene': 'GC13M067192', 'score': 0.77}]
chr13	GH13I067126	67126642	67129455	0.54	[{'connected_gene': 'PCDH9', 'score': 4.97}, {'connected_gene': 'GC13P067116', 'score': 0.39}]
chr13	GH13I067124	67124266	67126036	0.38	[{'connected_gene': 'PCDH9', 'score': 4.78}, {'connected_gene': 'GC13P067116', 'score': 0.44}]
chr13	GH13I067146	67146250	67149139	1.19	[{'connected_gene': 'PCDH9', 'score': 13.36}, {'connected_gene': 'GC13P067116', 'score': 0.29}]
chr13	GH13I066508	66508609	66508758	0.46	[{'connected_gene': 'LOC105370247', 'score': 0.23}, {'connected_gene': 'GC13M066408', 'score': 0.15}, {'connected_gene': 'PCDH9', 'score': 0.03}]
chr13	GH13I066577	66577260	66577357	0.33	[{'connected_gene': 'LOC105370247', 'score': 0.37}, {'connected_gene': 'GC13M066601', 'score': 0.31}, {'connected_gene': 'PCDH9', 'score': 0.03}]
chr13	GH13I066573	66572001	66572360	0.33	[{'connected_gene': 'LOC105370247', 'score': 0.39}, {'connected_gene': 'GC13M066601', 'score': 0.29}, {'connected_gene': 'PCDH9', 'score': 0.03}]
chr13	GH13I066531	66531995	66532779	0.38	[{'connected_gene': 'LOC105370247', 'score': 0.31}, {'connected_gene': 'GC13M066408', 'score': 0.13}, {'connected_gene': 'PCDH9', 'score': 0.02}]
chr13	GH13I066574	66574132	66575378	0.2	[{'connected_gene': 'LOC105370247', 'score': 0.39}, {'connected_gene': 'GC13M066601', 'score': 0.31}, {'connected_gene': 'PCDH9', 'score': 0.03}]
chr13	GH13I066572	66572759	66573078	0.34	[{'connected_gene': 'LOC105370247', 'score': 0.39}, {'connected_gene': 'GC13M066601', 'score': 0.29}, {'connected_gene': 'PCDH9', 'score': 0.03}]
chr13	GH13I066992	66992329	66992378	0.49	[{'connected_gene': 'PCDH9-AS4', 'score': 550.77}, {'connected_gene': 'GC13M066851', 'score': 0.44}, {'connected_gene': 'PCDH9', 'score': 0.07}]
chr13	GH13I066993	66993530	66996963	0.98	[{'connected_gene': 'PCDH9-AS4', 'score': 0.77}, {'connected_gene': 'GC13M066851', 'score': 0.77}, {'connected_gene': 'PCDH9', 'score': 0.07}]
chr13	GH13I067023	67023186	67024369	0.74	[{'connected_gene': 'PCDH9-AS4', 'score': 10.86}, {'connected_gene': 'PCDH9-AS3', 'score': 10.8}, {'connected_gene': 'GC13M066851', 'score': 0.31}, {'connected_gene': 'GC13M067082', 'score': 0.21}, {'connected_gene': 'PCDH9', 'score': 0.08}]
chr13	GH13I066887	66887202	66887594	0.53	[{'connected_gene': 'PCDH9-AS3', 'score': 10.12}, {'connected_gene': 'PCDH9', 'score': 6.62}, {'connected_gene': 'GC13M066891', 'score': 0.44}, {'connected_gene': 'PCDH9-AS2', 'score': 0.21}, {'connected_gene': 'GC13M066851', 'score': 0.14}]
chr13	GH13I067034	67034582	67035530	0.31	[{'connected_gene': 'PCDH9-AS3', 'score': 10.96}, {'connected_gene': 'PCDH9', 'score': 6.88}, {'connected_gene': 'GC13M066851', 'score': 0.28}, {'connected_gene': 'GC13M067082', 'score': 0.25}]
chr13	GH13I067031	67031689	67034343	0.31	[{'connected_gene': 'PCDH9-AS3', 'score': 10.96}, {'connected_gene': 'PCDH9', 'score': 10.85}, {'connected_gene': 'GC13M066851', 'score': 0.29}, {'connected_gene': 'GC13M067082', 'score': 0.23}]
chr13	GH13I067035	67035612	67046572	0.64	[{'connected_gene': 'PCDH9-AS3', 'score': 11.06}, {'connected_gene': 'PCDH9', 'score': 10.89}, {'connected_gene': 'GC13M067082', 'score': 0.26}, {'connected_gene': 'GC13M066851', 'score': 0.26}]
chr13	GH13I067150	67150644	67153366	0.43	[{'connected_gene': 'PCDH9-AS3', 'score': 10.63}, {'connected_gene': 'PCDH9', 'score': 10.54}, {'connected_gene': 'GC13P067116', 'score': 0.28}]
chr13	GH13I066344	66344849	66344998	0.2	[{'connected_gene': 'PCDH9-AS1', 'score': 0.26}, {'connected_gene': 'GC13M066408', 'score': 0.21}, {'connected_gene': 'PCDH9', 'score': 0.02}]
chr13	GH13I066315	66315222	66316453	0.2	[{'connected_gene': 'PCDH9-AS1', 'score': 0.39}, {'connected_gene': 'GC13M066408', 'score': 0.16}, {'connected_gene': 'PCDH9', 'score': 0.03}]
chr13	GH13I066312	66312130	66313461	0.57	[{'connected_gene': 'PCDH9-AS1', 'score': 0.44}, {'connected_gene': 'GC13M066408', 'score': 0.15}, {'connected_gene': 'PCDH9', 'score': 0.02}]
chr13	GH13I066306	66306252	66306636	0.52	[{'connected_gene': 'PCDH9-AS1', 'score': 0.77}, {'connected_gene': 'GC13M066408', 'score': 0.15}, {'connected_gene': 'PCDH9', 'score': 0.03}]
chr13	GH13I066834	66834912	66835603	1.02	[{'connected_gene': 'PCDH9-AS2', 'score': 0.39}, {'connected_gene': 'GC13M066891', 'score': 0.21}, {'connected_gene': 'PCDH9', 'score': 0.05}]
chr13	GH13I066665	66665259	66666556	0.69	[{'connected_gene': 'RNU7-87P', 'score': 11.07}, {'connected_gene': 'GC13M066713', 'score': 0.25}, {'connected_gene': 'PCDH9', 'score': 0.03}]
chr13	GH13I066673	66673048	66673803	0.43	[{'connected_gene': 'RNU7-87P', 'score': 0.26}, {'connected_gene': 'GC13M066713', 'score': 0.26}, {'connected_gene': 'PCDH9', 'score': 0.03}]
chr13	GH13I066634	66634733	66636298	0.57	[{'connected_gene': 'RNU7-87P', 'score': 0.77}, {'connected_gene': 'LOC105370247', 'score': 0.18}, {'connected_gene': 'GC13M066713', 'score': 0.18}, {'connected_gene': 'PCDH9', 'score': 0.03}]
chr13	GH13I066659	66659225	66660871	0.93	[{'connected_gene': 'RNU7-87P', 'score': 0.31}, {'connected_gene': 'GC13M066713', 'score': 0.23}, {'connected_gene': 'LOC105370247', 'score': 0.15}, {'connected_gene': 'PCDH9', 'score': 0.03}]
chr13	GH13I066656	66656084	66658165	1.03	[{'connected_gene': 'RNU7-87P', 'score': 11.49}, {'connected_gene': 'GC13M066713', 'score': 0.22}, {'connected_gene': 'LOC105370247', 'score': 0.15}, {'connected_gene': 'PCDH9', 'score': 0.03}]
chr13	GH13I067114	67114154	67119424	0.62	[{'connected_gene': 'GC13P067116', 'score': 550.77}, {'connected_gene': 'PCDH9', 'score': 20.28}, {'connected_gene': 'PCDH9-AS3', 'score': 10.76}, {'connected_gene': 'GC13M067082', 'score': 0.29}]
chr13	GH13I067138	67138793	67139630	0.46	[{'connected_gene': 'GC13P067116', 'score': 0.34}, {'connected_gene': 'PCDH9', 'score': 0.16}]
chr13	GH13I067083	67083246	67084915	0.52	[{'connected_gene': 'GC13M067082', 'score': 550.77}, {'connected_gene': 'PCDH9', 'score': 11.29}, {'connected_gene': 'GC13M066851', 'score': 0.17}]
chr13	GH13I067143	67143379	67145686	0.43	[{'connected_gene': 'GC13P067116', 'score': 0.31}, {'connected_gene': 'PCDH9', 'score': 0.17}]
chr13	GH13I067100	67100302	67101375	1.16	[{'connected_gene': 'GC13M067082', 'score': 0.37}, {'connected_gene': 'GC13P067116', 'score': 0.37}, {'connected_gene': 'PCDH9', 'score': 0.13}]
chr13	GH13I067119	67119669	67119898	0.93	[{'connected_gene': 'GC13P067116', 'score': 0.77}, {'connected_gene': 'PCDH9', 'score': 0.14}]
chr13	GH13I067160	67160525	67162182	0.2	[{'connected_gene': 'GC13P067116', 'score': 0.26}, {'connected_gene': 'PCDH9', 'score': 0.2}]
chr13	GH13I066588	66588188	66588464	0.51	[{'connected_gene': 'GC13M066601', 'score': 0.37}, {'connected_gene': 'LOC105370247', 'score': 0.31}, {'connected_gene': 'PCDH9', 'score': 0.03}]
chr13	GH13I066926	66926842	66927868	0.7	[{'connected_gene': 'GC13M066891', 'score': 0.29}, {'connected_gene': 'PCDH9-AS3', 'score': 0.23}, {'connected_gene': 'GC13M066851', 'score': 0.19}, {'connected_gene': 'PCDH9', 'score': 0.06}]
chr13	GH13I066933	66933451	66934650	0.71	[{'connected_gene': 'GC13M066891', 'score': 0.28}, {'connected_gene': 'PCDH9-AS3', 'score': 0.26}, {'connected_gene': 'GC13M066851', 'score': 0.21}, {'connected_gene': 'PCDH9', 'score': 0.06}]
chr13	GH13I066405	66405128	66407790	0.52	[{'connected_gene': 'GC13M066408', 'score': 0.77}, {'connected_gene': 'PCDH9-AS1', 'score': 0.15}, {'connected_gene': 'PCDH9', 'score': 0.03}]