PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000416782	[[75006509, 75006586], [75006767, 75007262], [75011520, 75011781], [75012227, 75012390]]	[[75007164, 75007262], [75011520, 75011781], [75012227, 75012240]]
ENST00000479005	[[75008600, 75010749], [75011520, 75011795], [75012227, 75012383]]	None
ENST00000372945	[[75008600, 75010749], [75011520, 75011781], [75012227, 75012451]]	[[75010609, 75010749], [75011520, 75011781], [75012227, 75012240]]
ENST00000372940	[[75008695, 75009076], [75011520, 75011781], [75012227, 75012451]]	[[75009050, 75009076], [75011520, 75011781], [75012227, 75012240]]
ENST00000471251	[[75010498, 75010749], [75011520, 75011781], [75012016, 75012162]]	None
ENST00000473427	[[75010501, 75010749], [75011520, 75011781], [75012289, 75012392]]	None
NM_016065	[[75008600, 75010749], [75011520, 75011781], [75012227, 75012451]]	[[75010609, 75010749], [75011520, 75011781], [75012227, 75012240]]

Promoter

Chrom	Start	End	Description
chr10	75012141	75012167	CAGE_peak_3_at_MRPS16_5end
chr10	75012310	75012337	CAGE_peak_2_at_MRPS16_5end
chr10	75012360	75012408	CAGE_peak_1_at_MRPS16_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I073758	73758279	73761838	0.89	[{'connected_gene': 'NDST2', 'score': 18.83}, {'connected_gene': 'ENSG00000224195', 'score': 11.3}, {'connected_gene': 'CAMK2G', 'score': 11.2}, {'connected_gene': 'MRPS16', 'score': 5.16}, {'connected_gene': 'GC10P073762', 'score': 0.77}, {'connected_gene': 'SEC24C', 'score': 0.37}, {'connected_gene': 'GC10M073741', 'score': 0.37}]
chr10	GH10I073243	73243499	73249007	2.29	[{'connected_gene': 'DNAJC9-AS1', 'score': 550.77}, {'connected_gene': 'DNAJC9', 'score': 550.77}, {'connected_gene': 'SEC24C', 'score': 43.98}, {'connected_gene': 'NDST2', 'score': 40.51}, {'connected_gene': 'ZSWIM8', 'score': 37.83}, {'connected_gene': 'NUDT13', 'score': 33.9}, {'connected_gene': 'DNAJB12', 'score': 31.99}, {'connected_gene': 'GLUD1P3', 'score': 31.46}, {'connected_gene': 'ZSWIM8-AS1', 'score': 30.56}, {'connected_gene': 'ENSG00000272140', 'score': 26.02}, {'connected_gene': 'AP3M1', 'score': 24.76}, {'connected_gene': 'DUSP8P5', 'score': 22.39}, {'connected_gene': 'BMS1P4', 'score': 21.58}, {'connected_gene': 'CFAP70', 'score': 20.38}, {'connected_gene': 'RPL17P50', 'score': 12.79}, {'connected_gene': 'ECD', 'score': 11.32}, {'connected_gene': 'ENSG00000233144', 'score': 9.9}, {'connected_gene': 'ENSG00000242288', 'score': 9.68}, {'connected_gene': 'MRPS16', 'score': 0.44}, {'connected_gene': 'PIR34636', 'score': 0.44}, {'connected_gene': 'FAM149B1', 'score': 0.18}]
chr10	GH10I073250	73250585	73254082	2.28	[{'connected_gene': 'ENSG00000227540', 'score': 550.77}, {'connected_gene': 'MRPS16', 'score': 550.77}, {'connected_gene': 'DNAJB12', 'score': 49.77}, {'connected_gene': 'NDST2', 'score': 46.18}, {'connected_gene': 'ZSWIM8', 'score': 43.85}, {'connected_gene': 'SEC24C', 'score': 43.78}, {'connected_gene': 'AP3M1', 'score': 43.14}, {'connected_gene': 'ECD', 'score': 35.15}, {'connected_gene': 'NUDT13', 'score': 33.89}, {'connected_gene': 'ENSG00000272140', 'score': 33.07}, {'connected_gene': 'GLUD1P3', 'score': 32.49}, {'connected_gene': 'DUSP8P5', 'score': 30.82}, {'connected_gene': 'BMS1P4', 'score': 29.15}, {'connected_gene': 'ZSWIM8-AS1', 'score': 28.03}, {'connected_gene': 'ENSG00000242288', 'score': 21.85}, {'connected_gene': 'CFAP70', 'score': 20.27}, {'connected_gene': 'AGAP5', 'score': 11.31}, {'connected_gene': 'ENSG00000268584', 'score': 9.8}, {'connected_gene': 'DNAJC9-AS1', 'score': 0.77}, {'connected_gene': 'DNAJC9', 'score': 0.77}]
chr10	GH10I073229	73229801	73230200	0.31	[{'connected_gene': 'ENSG00000227540', 'score': 11.92}, {'connected_gene': 'MRPS16', 'score': 11.13}, {'connected_gene': 'NUDT13', 'score': 10.13}, {'connected_gene': 'RNU6-883P', 'score': 9.29}, {'connected_gene': 'USP54', 'score': 9.28}, {'connected_gene': 'LOC105378358', 'score': 0.77}, {'connected_gene': 'DNAJC9', 'score': 0.37}, {'connected_gene': 'EIF4A2P2', 'score': 0.29}, {'connected_gene': 'FAM149B1', 'score': 0.21}]