PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000469458	[[52485802, 52486077], [52486597, 52486684], [52489162, 52489246]]	None
ENST00000371626	[[52485802, 52486684], [52489162, 52489246], [52490181, 52490251], [52492946, 52493020], [52494249, 52494302], [52507208, 52507269], [52520671, 52521843]]	[[52486604, 52486684], [52489162, 52489246], [52490181, 52490251], [52492946, 52493020], [52494249, 52494302], [52507208, 52507269], [52520671, 52520768]]
ENST00000472624	[[52486585, 52486684], [52489162, 52489246], [52490181, 52490251], [52492946, 52493020], [52494249, 52494302], [52496038, 52496220], [52507208, 52507269], [52520671, 52520848]]	[[52496207, 52496220], [52507208, 52507269], [52520671, 52520768]]
ENST00000471493	[[52488740, 52489246], [52490181, 52490328]]	None
ENST00000610127	[[52499170, 52499723], [52507208, 52507269], [52520671, 52520863]]	[[52499713, 52499723], [52507208, 52507269], [52520671, 52520768]]
NM_015913	[[52485802, 52486684], [52489162, 52489246], [52490181, 52490251], [52492946, 52493020], [52494249, 52494302], [52507208, 52507269], [52520671, 52521843]]	[[52486604, 52486684], [52489162, 52489246], [52490181, 52490251], [52492946, 52493020], [52494249, 52494302], [52507208, 52507269], [52520671, 52520768]]
NR_046405	[[52497768, 52499723], [52507208, 52507269], [52520671, 52521843]]	None
NR_046406	[[52497768, 52499600], [52507208, 52507269], [52520671, 52521843]]	None

Promoter

Chrom	Start	End	Description
chr1	52520828	52520888	CAGE_peak_1_at_TXNDC12_5end
chr1	52521091	52521102	CAGE_peak_16_at_TXNDC12_5end
chr1	52521359	52521378	CAGE_peak_4_at_TXNDC12_5end
chr1	52521381	52521400	CAGE_peak_2_at_TXNDC12_5end
chr1	52521417	52521448	CAGE_peak_5_at_TXNDC12_5end
chr1	52521768	52521784	CAGE_peak_7_at_TXNDC12_5end
chr1	52521787	52521800	CAGE_peak_6_at_TXNDC12_5end
chr1	52521831	52521860	CAGE_peak_3_at_TXNDC12_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I052138	52138808	52143600	2.24	[{'connected_gene': 'ZFYVE9', 'score': 550.77}, {'connected_gene': 'PRPF38A', 'score': 23.99}, {'connected_gene': 'ZCCHC11', 'score': 16.13}, {'connected_gene': 'RPS13P2', 'score': 12.14}, {'connected_gene': 'ENSG00000230953', 'score': 11.32}, {'connected_gene': 'ENSG00000266993', 'score': 10.64}, {'connected_gene': 'PODN', 'score': 10.4}, {'connected_gene': 'CC2D1B', 'score': 9.26}, {'connected_gene': 'LOC100190934', 'score': 8.97}, {'connected_gene': 'GPX7', 'score': 8.73}, {'connected_gene': 'TXNDC12', 'score': 5.71}, {'connected_gene': 'PIR34571', 'score': 0.23}]
chr1	GH01I052402	52402662	52405901	2.28	[{'connected_gene': 'PRPF38A', 'score': 561.31}, {'connected_gene': 'ORC1', 'score': 550.77}, {'connected_gene': 'MAGOH', 'score': 24.31}, {'connected_gene': 'KTI12', 'score': 17.91}, {'connected_gene': 'ENSG00000266993', 'score': 15.12}, {'connected_gene': 'TXNDC12', 'score': 11.2}, {'connected_gene': 'PLA2G12AP1', 'score': 0.28}]
chr1	GH01I052053	52053640	52058017	2.11	[{'connected_gene': 'TXNDC12', 'score': 560.22}, {'connected_gene': 'PIR60864', 'score': 550.77}, {'connected_gene': 'GC01M052055', 'score': 550.77}, {'connected_gene': 'BTF3L4', 'score': 550.77}, {'connected_gene': 'LOC100190934', 'score': 18.42}, {'connected_gene': 'ENSG00000230953', 'score': 12.85}, {'connected_gene': 'ZCCHC11', 'score': 12.33}, {'connected_gene': 'ENSG00000223390', 'score': 12.03}, {'connected_gene': 'KTI12', 'score': 12.03}, {'connected_gene': 'ZFYVE9', 'score': 11.56}, {'connected_gene': 'TTC39A', 'score': 5.59}, {'connected_gene': 'TXNDC12-AS1', 'score': 0.77}]
chr1	GH01I051874	51874801	51880132	2.56	[{'connected_gene': 'NRDC', 'score': 561.05}, {'connected_gene': 'ENSG00000266993', 'score': 63.03}, {'connected_gene': 'ZCCHC11', 'score': 52.1}, {'connected_gene': 'PRPF38A', 'score': 23.07}, {'connected_gene': 'CC2D1B', 'score': 14.37}, {'connected_gene': 'ZFYVE9', 'score': 13.19}, {'connected_gene': 'LINC01562', 'score': 12.69}, {'connected_gene': 'TXNDC12', 'score': 11.24}, {'connected_gene': 'RPS13P2', 'score': 10.09}, {'connected_gene': 'KTI12', 'score': 9.84}, {'connected_gene': 'GPX7', 'score': 9.83}, {'connected_gene': 'OSBPL9', 'score': 1.69}, {'connected_gene': 'GC01P051865', 'score': 0.39}]
chr1	GH01I051666	51666001	51667264	0.93	[{'connected_gene': 'NRDC', 'score': 9.73}, {'connected_gene': 'OSBPL9', 'score': 5.35}, {'connected_gene': 'EPS15', 'score': 1.6}, {'connected_gene': 'TXNDC12', 'score': 1.38}, {'connected_gene': 'GAPDHP51', 'score': 0.26}, {'connected_gene': 'LOC105378719', 'score': 0.26}]
chr1	GH01I052330	52330427	52330557	0.92	[{'connected_gene': 'MAGOH', 'score': 13.96}, {'connected_gene': 'PLA2G12AP1', 'score': 11.51}, {'connected_gene': 'CC2D1B', 'score': 11.51}, {'connected_gene': 'TXNDC12', 'score': 11.21}, {'connected_gene': 'TXNDC12-AS1', 'score': 10.86}, {'connected_gene': 'KTI12', 'score': 9.8}, {'connected_gene': 'GC01M052353', 'score': 0.34}, {'connected_gene': 'GC01M052352', 'score': 0.34}, {'connected_gene': 'GC01P052280', 'score': 0.25}, {'connected_gene': 'ZFYVE9', 'score': 0.09}]
chr1	GH01I052037	52037346	52038676	0.91	[{'connected_gene': 'CC2D1B', 'score': 19.91}, {'connected_gene': 'ENSG00000223390', 'score': 0.77}, {'connected_gene': 'KTI12', 'score': 0.77}, {'connected_gene': 'TXNDC12-AS1', 'score': 0.39}, {'connected_gene': 'TXNDC12', 'score': 0.37}]
chr1	GH01I051728	51728221	51731591	2.07	[{'connected_gene': 'OSBPL9', 'score': 554.01}, {'connected_gene': 'GC01P051732', 'score': 550.77}, {'connected_gene': 'GC01P051733', 'score': 550.77}, {'connected_gene': 'ENSG00000266993', 'score': 16.21}, {'connected_gene': 'PRPF38A', 'score': 11.77}, {'connected_gene': 'TXNDC12', 'score': 11.2}, {'connected_gene': 'ZCCHC11', 'score': 11.17}, {'connected_gene': 'NRDC', 'score': 10.39}, {'connected_gene': 'GPX7', 'score': 9.83}, {'connected_gene': 'KTI12', 'score': 9.79}, {'connected_gene': 'RNU6-877P', 'score': 9.15}, {'connected_gene': 'ENSG00000212624', 'score': 0.44}]
chr1	GH01I052032	52032214	52034577	2.04	[{'connected_gene': 'KTI12', 'score': 564.63}, {'connected_gene': 'ENSG00000223390', 'score': 550.77}, {'connected_gene': 'ZCCHC11', 'score': 25.72}, {'connected_gene': 'ENSG00000266993', 'score': 22.36}, {'connected_gene': 'CC2D1B', 'score': 18.8}, {'connected_gene': 'TXNDC12', 'score': 11.94}, {'connected_gene': 'BTF3L4', 'score': 11.94}, {'connected_gene': 'ORC1', 'score': 10.82}, {'connected_gene': 'LOC100190934', 'score': 8.61}]
chr1	GH01I052027	52027917	52029103	0.56	[{'connected_gene': 'LOC100190934', 'score': 7.61}, {'connected_gene': 'CC2D1B', 'score': 4.55}, {'connected_gene': 'ENSG00000223390', 'score': 0.77}, {'connected_gene': 'TXNDC12', 'score': 0.31}, {'connected_gene': 'GC01M051997', 'score': 0.29}, {'connected_gene': 'GC01M051996', 'score': 0.29}]
chr1	GH01I052033	52032000	52032201	0.68	[{'connected_gene': 'ENSG00000223390', 'score': 550.77}, {'connected_gene': 'KTI12', 'score': 550.77}, {'connected_gene': 'TXNDC12', 'score': 0.34}, {'connected_gene': 'GC01M051997', 'score': 0.29}, {'connected_gene': 'GC01M051996', 'score': 0.29}]
chr1	GH01I052042	52042279	52042482	0.24	[{'connected_gene': 'ENSG00000223390', 'score': 0.44}, {'connected_gene': 'KTI12', 'score': 0.44}, {'connected_gene': 'TXNDC12-AS1', 'score': 0.44}, {'connected_gene': 'TXNDC12', 'score': 0.39}]