PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000330263	[[19578032, 19578357], [19581275, 19581334], [19582441, 19582545], [19583557, 19583639], [19583947, 19584015], [19584326, 19584478], [19584970, 19585047], [19585174, 19586622]]	[[19578329, 19578357], [19581275, 19581334], [19582441, 19582545], [19583557, 19583639], [19583947, 19584015], [19584326, 19584478], [19584970, 19585047], [19585174, 19585324]]
ENST00000493700	[[19578328, 19578742], [19581275, 19581334], [19582441, 19582546]]	None
ENST00000479559	[[19584205, 19584478], [19584970, 19585047], [19585174, 19585233]]	None
NM_016183	[[19578074, 19578357], [19581275, 19581334], [19582441, 19582545], [19583557, 19583639], [19583947, 19584015], [19584326, 19584478], [19584970, 19585047], [19585174, 19586622]]	[[19578329, 19578357], [19581275, 19581334], [19582441, 19582545], [19583557, 19583639], [19583947, 19584015], [19584326, 19584478], [19584970, 19585047], [19585174, 19585324]]

Promoter

Chrom	Start	End	Description
chr1	19578036	19578094	CAGE_peak_2_at_MRTO4_5end
chr1	19578097	19578114	CAGE_peak_3_at_MRTO4_5end
chr1	19578116	19578131	CAGE_peak_4_at_MRTO4_5end
chr1	19578147	19578153	CAGE_peak_6_at_MRTO4_5end
chr1	19578280	19578334	CAGE_peak_1_at_MRTO4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I019082	19082665	19084205	0.83	[{'connected_gene': 'TAS1R2', 'score': 10.47}, {'connected_gene': 'MRTO4', 'score': 4.67}, {'connected_gene': 'ENSG00000272084', 'score': 0.44}, {'connected_gene': 'GC01M019115', 'score': 0.29}, {'connected_gene': 'UBR4', 'score': 0.13}]
chr1	GH01I019079	19079505	19082581	1.32	[{'connected_gene': 'TAS1R2', 'score': 10.47}, {'connected_gene': 'EMC1', 'score': 8.24}, {'connected_gene': 'UBR4', 'score': 5.64}, {'connected_gene': 'MRTO4', 'score': 4.65}, {'connected_gene': 'ENSG00000272084', 'score': 0.44}, {'connected_gene': 'GC01M019115', 'score': 0.28}]
chr1	GH01I019267	19267452	19268366	0.2	[{'connected_gene': 'MRTO4', 'score': 4.77}, {'connected_gene': 'GC01M019261', 'score': 0.77}, {'connected_gene': 'AKR7L', 'score': 0.44}]
chr1	GH01I019089	19089335	19090110	0.46	[{'connected_gene': 'MRTO4', 'score': 4.67}, {'connected_gene': 'ENSG00000272084', 'score': 0.39}, {'connected_gene': 'GC01M019115', 'score': 0.31}, {'connected_gene': 'UBR4', 'score': 0.13}]
chr1	GH01I019268	19268470	19271270	0.56	[{'connected_gene': 'MRTO4', 'score': 8.9}, {'connected_gene': 'EMC1', 'score': 7.43}, {'connected_gene': 'AKR7L', 'score': 0.77}, {'connected_gene': 'GC01M019261', 'score': 0.44}]
chr1	GH01I019249	19249601	19250000	0.43	[{'connected_gene': 'MRTO4', 'score': 561.33}, {'connected_gene': 'EMC1', 'score': 550.77}, {'connected_gene': 'PIR41702', 'score': 0.37}]
chr1	GH01I019250	19250544	19253767	2.09	[{'connected_gene': 'MRTO4', 'score': 567.29}, {'connected_gene': 'EMC1', 'score': 550.77}, {'connected_gene': 'GC01M019261', 'score': 0.39}]
chr1	GH01I019260	19260069	19261400	1	[{'connected_gene': 'MRTO4', 'score': 12.14}, {'connected_gene': 'EMC1', 'score': 8.29}, {'connected_gene': 'GC01M019261', 'score': 0.77}]
chr1	GH01I019069	19069620	19070074	0.43	[{'connected_gene': 'MRTO4', 'score': 4.47}, {'connected_gene': 'ENSG00000272084', 'score': 0.44}, {'connected_gene': 'LOC105376815', 'score': 0.37}]
chr1	GH01I018794	18794627	18794816	0.46	[{'connected_gene': 'MRTO4', 'score': 4.71}, {'connected_gene': 'GC01M018795', 'score': 0.77}, {'connected_gene': 'GC01P018746', 'score': 0.25}]
chr1	GH01I019639	19639894	19641322	1.23	[{'connected_gene': 'NBL1', 'score': 550.77}, {'connected_gene': 'MRTO4', 'score': 5.01}, {'connected_gene': 'AKR7A2', 'score': 4.88}, {'connected_gene': 'GC01M019654', 'score': 0.37}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.26}]
chr1	GH01I019271	19271855	19275219	1.32	[{'connected_gene': 'AKR7L', 'score': 550.77}, {'connected_gene': 'RNU6-1099P', 'score': 12.25}, {'connected_gene': 'AKR7A2', 'score': 12.24}, {'connected_gene': 'PQLC2', 'score': 12.24}, {'connected_gene': 'TAS1R2', 'score': 9.48}, {'connected_gene': 'MRTO4', 'score': 8.36}, {'connected_gene': 'AKR7A3', 'score': 6.98}, {'connected_gene': 'ENSG00000272084', 'score': 4.51}, {'connected_gene': 'GC01M019261', 'score': 0.44}]
chr1	GH01I019207	19207642	19211940	2.32	[{'connected_gene': 'UBR4', 'score': 574.13}, {'connected_gene': 'LOC101927895', 'score': 550.77}, {'connected_gene': 'EMC1', 'score': 32.07}, {'connected_gene': 'MRTO4', 'score': 4.83}, {'connected_gene': 'PIR60239', 'score': 0.31}]
chr1	GH01I019090	19090191	19093412	0.31	[{'connected_gene': 'EMC1', 'score': 11.97}, {'connected_gene': 'MRTO4', 'score': 4.67}, {'connected_gene': 'ENSG00000272084', 'score': 0.37}, {'connected_gene': 'GC01M019115', 'score': 0.31}, {'connected_gene': 'UBR4', 'score': 0.13}]
chr1	GH01I019085	19085915	19087024	0.4	[{'connected_gene': 'EMC1', 'score': 21.46}, {'connected_gene': 'MRTO4', 'score': 4.67}, {'connected_gene': 'ENSG00000272084', 'score': 0.39}, {'connected_gene': 'GC01M019115', 'score': 0.29}, {'connected_gene': 'UBR4', 'score': 0.13}]
chr1	GH01I019065	19065825	19067324	0.97	[{'connected_gene': 'EMC1', 'score': 20.62}, {'connected_gene': 'UBR4', 'score': 10.21}, {'connected_gene': 'MRTO4', 'score': 4.49}, {'connected_gene': 'ENSG00000272084', 'score': 0.44}, {'connected_gene': 'LOC105376815', 'score': 0.37}]
chr1	GH01I019121	19121459	19125190	0.43	[{'connected_gene': 'EMC1', 'score': 21.5}, {'connected_gene': 'UBR4', 'score': 11.25}, {'connected_gene': 'MRTO4', 'score': 4.69}, {'connected_gene': 'GC01M019115', 'score': 0.44}, {'connected_gene': 'GC01M019138', 'score': 0.29}]
chr1	GH01I019178	19178874	19181266	0.79	[{'connected_gene': 'EMC1', 'score': 22.51}, {'connected_gene': 'UBR4', 'score': 10.74}, {'connected_gene': 'MRTO4', 'score': 4.66}, {'connected_gene': 'PIR60239', 'score': 0.77}, {'connected_gene': 'GC01P019169', 'score': 0.39}]
chr1	GH01I019241	19241347	19241516	0.76	[{'connected_gene': 'EMC1', 'score': 21.72}, {'connected_gene': 'RNU6-1099P', 'score': 11.45}, {'connected_gene': 'AKR7A2', 'score': 11.43}, {'connected_gene': 'PQLC2', 'score': 11.43}, {'connected_gene': 'AKR7A3', 'score': 4.84}, {'connected_gene': 'PIR41702', 'score': 0.44}, {'connected_gene': 'MRTO4', 'score': 0.39}]
chr1	GH01I019287	19287493	19288598	1.01	[{'connected_gene': 'AKR7A3', 'score': 553.21}, {'connected_gene': 'EMC1', 'score': 14.69}, {'connected_gene': 'MRTO4', 'score': 5.19}, {'connected_gene': 'ALDH4A1', 'score': 1.94}, {'connected_gene': 'AKR7L', 'score': 0.39}]
chr1	GH01I019261	19261988	19262508	0.38	[{'connected_gene': 'GC01M019261', 'score': 550.77}, {'connected_gene': 'MRTO4', 'score': 8.91}, {'connected_gene': 'EMC1', 'score': 8.32}]
chr1	GH01I019231	19231794	19233693	0.6	[{'connected_gene': 'PIR41702', 'score': 550.77}, {'connected_gene': 'EMC1', 'score': 40.65}, {'connected_gene': 'MRTO4', 'score': 7.97}, {'connected_gene': 'AKR7A3', 'score': 5.96}, {'connected_gene': 'LOC101927895', 'score': 0.34}]
chr1	GH01I018798	18798154	18801046	0.82	[{'connected_gene': 'GC01M018795', 'score': 550.77}, {'connected_gene': 'EMC1', 'score': 14.41}, {'connected_gene': 'PAX7', 'score': 10.5}, {'connected_gene': 'MRTO4', 'score': 4.51}, {'connected_gene': 'TAS1R2', 'score': 0.21}]