PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000496856	[[179040778, 179041079], [179045348, 179045419], [179046070, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179052402]]	[[179046081, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179052210]]
ENST00000491818	[[179040863, 179041079], [179042829, 179043110], [179045348, 179045419], [179046070, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179051401]]	[[179046081, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179051401]]
ENST00000481587	[[179041033, 179041079], [179042737, 179042781], [179045348, 179045419], [179046070, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179051164]]	[[179046081, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179051164]]
ENST00000326361	[[179041550, 179041632], [179042829, 179043110], [179045348, 179045419], [179046070, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179053323]]	[[179046081, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179052210]]
ENST00000466264	[[179042940, 179043110], [179045348, 179045419], [179046070, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179051617]]	[[179046081, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179051617]]
ENST00000484866	[[179045348, 179045419], [179046070, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179052400]]	[[179046081, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179052210]]
ENST00000494234	[[179045531, 179045694], [179046070, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179051142]]	[[179046081, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179051142]]
ENST00000483460	[[179045905, 179046139], [179047405, 179047516], [179050776, 179050911]]	None
ENST00000466663	[[179047421, 179047516], [179047721, 179047843], [179050776, 179050911], [179051056, 179051518]]	None
NM_001303426	[[179040778, 179041079], [179045348, 179045419], [179046070, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179053323]]	[[179046081, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179052210]]
NM_001303425	[[179040778, 179041079], [179042737, 179042781], [179045348, 179045419], [179046070, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179053323]]	[[179046081, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179052210]]
NM_016331	[[179041550, 179041632], [179042829, 179043110], [179045348, 179045419], [179046070, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179053323]]	[[179046081, 179046139], [179047405, 179047516], [179050776, 179050911], [179051056, 179052210]]

Promoter

Chrom	Start	End	Description
chr3	179040643	179040740	CAGE_peak_2_at_ZNF639_5end
chr3	179040767	179040866	CAGE_peak_1_at_ZNF639_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I179016	179016761	179018021	0.49	[{'connected_gene': 'ZMAT3', 'score': 11.75}, {'connected_gene': 'ZNF639', 'score': 11.68}, {'connected_gene': 'LOC101928739', 'score': 11.42}, {'connected_gene': 'PIK3CA', 'score': 11.42}, {'connected_gene': 'GC03M179018', 'score': 0.77}, {'connected_gene': 'KCNMB2-AS1', 'score': 0.1}]
chr3	GH03I179026	179026561	179028159	0.78	[{'connected_gene': 'ZMAT3', 'score': 11.8}, {'connected_gene': 'ZNF639', 'score': 10.65}, {'connected_gene': 'LOC101928739', 'score': 10.53}, {'connected_gene': 'PIK3CA', 'score': 10.53}, {'connected_gene': 'GC03M179018', 'score': 0.44}]
chr3	GH03I179068	179068806	179072628	2.27	[{'connected_gene': 'ZMAT3', 'score': 562.5}, {'connected_gene': 'LOC101928739', 'score': 11.02}, {'connected_gene': 'PIK3CA', 'score': 11.02}, {'connected_gene': 'ZNF639', 'score': 10.79}, {'connected_gene': 'GC03M179018', 'score': 0.23}]
chr3	GH03I179346	179346345	179349751	2.03	[{'connected_gene': 'MFN1', 'score': 577.82}, {'connected_gene': 'ZNF639', 'score': 18.72}, {'connected_gene': 'ENSG00000242539', 'score': 11.84}]
chr3	GH03I179175	179175818	179175877	0.5	[{'connected_gene': 'PIK3CA', 'score': 561.54}, {'connected_gene': 'LOC101928739', 'score': 11.54}, {'connected_gene': 'ZNF639', 'score': 10.38}, {'connected_gene': 'ENSG00000201957', 'score': 0.44}, {'connected_gene': 'GC03P179235', 'score': 0.22}]
chr3	GH03I179321	179321381	179325640	2.03	[{'connected_gene': 'ZNF639', 'score': 567.47}, {'connected_gene': 'MFN1', 'score': 45.29}, {'connected_gene': 'ENSG00000242539', 'score': 12.25}, {'connected_gene': 'LOC101928739', 'score': 10.5}, {'connected_gene': 'PIK3CA', 'score': 10.5}, {'connected_gene': 'ENSG00000260743', 'score': 0.37}]
chr3	GH03I179015	179015307	179016000	1.01	[{'connected_gene': 'ZNF639', 'score': 11.0}, {'connected_gene': 'GC03M179018', 'score': 0.77}, {'connected_gene': 'KCNMB2-AS1', 'score': 0.1}]
chr3	GH03I179064	179064033	179064182	0.71	[{'connected_gene': 'ZNF639', 'score': 10.87}, {'connected_gene': 'LOC101928739', 'score': 10.6}, {'connected_gene': 'PIK3CA', 'score': 10.6}, {'connected_gene': 'ZMAT3', 'score': 0.44}, {'connected_gene': 'GC03M179018', 'score': 0.26}]
chr3	GH03I179093	179093069	179094540	0.38	[{'connected_gene': 'ZNF639', 'score': 15.85}, {'connected_gene': 'LOC101928739', 'score': 11.19}, {'connected_gene': 'PIK3CA', 'score': 11.19}, {'connected_gene': 'KCNMB3', 'score': 4.6}, {'connected_gene': 'GC03P179098', 'score': 0.77}, {'connected_gene': 'ZMAT3', 'score': 0.34}]
chr3	GH03I179107	179107714	179108822	0.31	[{'connected_gene': 'ZNF639', 'score': 11.33}, {'connected_gene': 'LOC101928739', 'score': 11.1}, {'connected_gene': 'PIK3CA', 'score': 11.1}, {'connected_gene': 'KCNMB3', 'score': 4.69}, {'connected_gene': 'ENSG00000200616', 'score': 0.39}]
chr3	GH03I179315	179315886	179316600	0.97	[{'connected_gene': 'ZNF639', 'score': 14.87}, {'connected_gene': 'LOC101928739', 'score': 11.1}, {'connected_gene': 'PIK3CA', 'score': 11.1}, {'connected_gene': 'KCNMB3', 'score': 0.25}]
chr3	GH03I179331	179331833	179331931	0.22	[{'connected_gene': 'ZNF639', 'score': 0.44}, {'connected_gene': 'ENSG00000260743', 'score': 0.44}]
chr3	GH03I179463	179463774	179465125	1.1	[{'connected_gene': 'MTHFD2P7', 'score': 550.77}, {'connected_gene': 'ZNF639', 'score': 9.81}, {'connected_gene': 'PIR62273', 'score': 0.34}]
chr3	GH03I179259	179259240	179259299	0.82	[{'connected_gene': 'KCNMB3', 'score': 550.44}, {'connected_gene': 'ZNF639', 'score': 11.33}, {'connected_gene': 'LRRFIP1P1', 'score': 0.77}, {'connected_gene': 'GC03P179238', 'score': 0.34}]
chr3	GH03I179146	179146724	179150329	2.07	[{'connected_gene': 'LOC101928739', 'score': 550.77}, {'connected_gene': 'PIK3CA', 'score': 550.77}, {'connected_gene': 'ENSG00000242539', 'score': 4.2}, {'connected_gene': 'ZNF639', 'score': 4.15}, {'connected_gene': 'ENSG00000201957', 'score': 0.34}]
chr3	GH03I179260	179260560	179262124	1.75	[{'connected_gene': 'LRRFIP1P1', 'score': 550.77}, {'connected_gene': 'ZNF639', 'score': 11.33}, {'connected_gene': 'GNB4', 'score': 1.69}, {'connected_gene': 'MFN1', 'score': 1.6}, {'connected_gene': 'PIK3CA', 'score': 1.39}, {'connected_gene': 'KCNMB3', 'score': 0.44}, {'connected_gene': 'GC03P179238', 'score': 0.34}]
chr3	GH03I179020	179020601	179020800	0.51	[{'connected_gene': 'GC03M179018', 'score': 550.77}, {'connected_gene': 'ZMAT3', 'score': 11.75}, {'connected_gene': 'ZNF639', 'score': 11.68}, {'connected_gene': 'LOC101928739', 'score': 11.43}, {'connected_gene': 'PIK3CA', 'score': 11.43}]
chr3	GH03I179098	179098400	179098971	0.67	[{'connected_gene': 'ENSG00000200616', 'score': 550.77}, {'connected_gene': 'GC03P179098', 'score': 550.77}, {'connected_gene': 'ZMAT3', 'score': 12.32}, {'connected_gene': 'LOC101928739', 'score': 10.86}, {'connected_gene': 'PIK3CA', 'score': 10.86}, {'connected_gene': 'ZNF639', 'score': 10.77}]