PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367577	[[181057637, 181059977]]	[[181058038, 181059022]]
NM_016545	[[181057637, 181059979]]	[[181058038, 181059022]]

Promoter

Chrom	Start	End	Description
chr1	181057688	181057692	CAGE_peak_2_at_IER5_5end
chr1	181057828	181057846	CAGE_peak_1_at_IER5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I180918	180918959	180919604	0.38	[{'connected_gene': 'LHX4', 'score': 13.31}, {'connected_gene': 'ENSG00000243155', 'score': 11.09}, {'connected_gene': 'XPR1', 'score': 10.27}, {'connected_gene': 'MR1', 'score': 10.12}, {'connected_gene': 'IER5', 'score': 10.05}, {'connected_gene': 'KIAA1614', 'score': 0.44}, {'connected_gene': 'GC01P180946', 'score': 0.31}]
chr1	GH01I181126	181126239	181132433	1.8	[{'connected_gene': 'LHX4', 'score': 80.02}, {'connected_gene': 'ACBD6', 'score': 42.07}, {'connected_gene': 'KIAA1614', 'score': 20.99}, {'connected_gene': 'IER5', 'score': 16.74}, {'connected_gene': 'MR1', 'score': 12.87}, {'connected_gene': 'GC01M181116', 'score': 0.39}, {'connected_gene': 'LINC01732', 'score': 0.25}]
chr1	GH01I181132	181132710	181137121	1.79	[{'connected_gene': 'LHX4', 'score': 72.28}, {'connected_gene': 'ACBD6', 'score': 20.68}, {'connected_gene': 'IER5', 'score': 15.9}, {'connected_gene': 'KIAA1614', 'score': 11.59}, {'connected_gene': 'MR1', 'score': 1.79}, {'connected_gene': 'STX6', 'score': 1.67}, {'connected_gene': 'GC01M181116', 'score': 0.37}, {'connected_gene': 'LINC01732', 'score': 0.28}]
chr1	GH01I181061	181061401	181064479	1.3	[{'connected_gene': 'LHX4', 'score': 9.79}, {'connected_gene': 'IER5', 'score': 8.02}, {'connected_gene': 'GC01P181059', 'score': 0.77}, {'connected_gene': 'MR1', 'score': 0.31}]
chr1	GH01I181084	181084153	181085034	1.12	[{'connected_gene': 'LHX4', 'score': 10.68}, {'connected_gene': 'MR1P1', 'score': 4.79}, {'connected_gene': 'IER5', 'score': 0.77}, {'connected_gene': 'GC01P181059', 'score': 0.31}]
chr1	GH01I180609	180609639	180612807	1.44	[{'connected_gene': 'KIAA1614', 'score': 4.82}, {'connected_gene': 'IER5', 'score': 2.26}, {'connected_gene': 'XPR1', 'score': 0.34}, {'connected_gene': 'OVAAL', 'score': 0.23}]
chr1	GH01I181086	181086765	181098360	2.83	[{'connected_gene': 'IER5', 'score': 568.46}, {'connected_gene': 'PIR40361', 'score': 550.77}, {'connected_gene': 'GC01P181092', 'score': 550.77}, {'connected_gene': 'GC01M181092', 'score': 550.77}, {'connected_gene': 'LHX4', 'score': 33.59}, {'connected_gene': 'MR1', 'score': 12.91}, {'connected_gene': 'STX6', 'score': 3.23}, {'connected_gene': 'GC01M181116', 'score': 0.31}]
chr1	GH01I181151	181151124	181154518	2.13	[{'connected_gene': 'IER5', 'score': 11.98}, {'connected_gene': 'ACBD6', 'score': 11.19}, {'connected_gene': 'MR1', 'score': 11.05}, {'connected_gene': 'ENSG00000243155', 'score': 10.41}, {'connected_gene': 'LINC01732', 'score': 0.34}, {'connected_gene': 'GC01M181116', 'score': 0.28}]
chr1	GH01I181159	181159012	181162174	1.21	[{'connected_gene': 'IER5', 'score': 22.89}, {'connected_gene': 'MR1', 'score': 12.14}, {'connected_gene': 'STX6', 'score': 1.62}, {'connected_gene': 'LINC01732', 'score': 0.39}, {'connected_gene': 'GC01M181116', 'score': 0.26}]
chr1	GH01I181166	181166401	181166976	1.01	[{'connected_gene': 'IER5', 'score': 11.13}, {'connected_gene': 'MR1', 'score': 10.26}, {'connected_gene': 'ENSG00000243155', 'score': 10.2}, {'connected_gene': 'LINC01732', 'score': 0.44}, {'connected_gene': 'GC01M181116', 'score': 0.25}]
chr1	GH01I181041	181041400	181041800	0.31	[{'connected_gene': 'IER5', 'score': 12.2}, {'connected_gene': 'MR1', 'score': 0.44}, {'connected_gene': 'GC01P181059', 'score': 0.37}]
chr1	GH01I181040	181040601	181040800	0.49	[{'connected_gene': 'IER5', 'score': 12.2}, {'connected_gene': 'MR1', 'score': 0.44}, {'connected_gene': 'GC01P181059', 'score': 0.37}]
chr1	GH01I181038	181038505	181038694	0.87	[{'connected_gene': 'IER5', 'score': 12.2}, {'connected_gene': 'ENSG00000243155', 'score': 10.3}, {'connected_gene': 'MR1', 'score': 0.44}, {'connected_gene': 'GC01P181059', 'score': 0.34}]
chr1	GH01I181139	181139204	181143194	1.74	[{'connected_gene': 'IER5', 'score': 15.92}, {'connected_gene': 'STX6', 'score': 3.12}, {'connected_gene': 'MR1', 'score': 2.2}, {'connected_gene': 'GC01M181116', 'score': 0.34}, {'connected_gene': 'LINC01732', 'score': 0.29}]
chr1	GH01I181148	181148840	181150355	1.09	[{'connected_gene': 'IER5', 'score': 11.33}, {'connected_gene': 'LINC01732', 'score': 0.34}, {'connected_gene': 'GC01M181116', 'score': 0.29}]
chr1	GH01I181077	181077279	181079676	0.96	[{'connected_gene': 'IER5', 'score': 0.39}, {'connected_gene': 'GC01P181059', 'score': 0.37}]
chr1	GH01I181098	181098881	181107032	1.83	[{'connected_gene': 'MR1', 'score': 11.31}, {'connected_gene': 'LHX4', 'score': 9.84}, {'connected_gene': 'IER5', 'score': 2.64}, {'connected_gene': 'XPR1', 'score': 1.29}, {'connected_gene': 'GC01M181116', 'score': 0.39}, {'connected_gene': 'GC01M181092', 'score': 0.39}]
chr1	GH01I180881	180881801	180882400	1.06	[{'connected_gene': 'LOC105371638', 'score': 12.29}, {'connected_gene': 'KIAA1614', 'score': 12.24}, {'connected_gene': 'ENSG00000243155', 'score': 11.13}, {'connected_gene': 'IER5', 'score': 11.05}, {'connected_gene': 'MR1', 'score': 10.09}, {'connected_gene': 'GC01M180874', 'score': 0.44}, {'connected_gene': 'XPR1', 'score': 0.07}]
chr1	GH01I180921	180921967	180924511	1.16	[{'connected_gene': 'ENSG00000243155', 'score': 11.1}, {'connected_gene': 'LHX4', 'score': 10.68}, {'connected_gene': 'XPR1', 'score': 10.27}, {'connected_gene': 'MR1', 'score': 10.12}, {'connected_gene': 'IER5', 'score': 10.05}, {'connected_gene': 'KIAA1614', 'score': 9.29}, {'connected_gene': 'GC01P180946', 'score': 0.34}]
chr1	GH01I181073	181073589	181073998	1.07	[{'connected_gene': 'GC01P181059', 'score': 0.39}, {'connected_gene': 'IER5', 'score': 0.39}]