PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr14	24701644	24701730	CAGE_peak_4_at_GMPR2_5end
chr14	24701819	24701869	CAGE_peak_2_at_GMPR2_5end
chr14	24701870	24701890	CAGE_peak_5_at_GMPR2_5end
chr14	24702073	24702082	CAGE_peak_6_at_GMPR2_5end
chr14	24702099	24702124	CAGE_peak_3_at_GMPR2_5end
chr14	24702127	24702150	CAGE_peak_1_at_GMPR2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I024270	24270149	24275502	2.41	[{'connected_gene': 'RABGGTA', 'score': 550.77}, {'connected_gene': 'LOC102725044', 'score': 550.77}, {'connected_gene': 'TSSK4', 'score': 35.45}, {'connected_gene': 'IPO4', 'score': 31.35}, {'connected_gene': 'RNF31', 'score': 23.06}, {'connected_gene': 'HOMEZ', 'score': 21.69}, {'connected_gene': 'KHNYN', 'score': 21.54}, {'connected_gene': 'NOP9', 'score': 21.08}, {'connected_gene': 'NGDN', 'score': 20.87}, {'connected_gene': 'DHRS1', 'score': 18.86}, {'connected_gene': 'TINF2', 'score': 17.44}, {'connected_gene': 'LTB4R', 'score': 15.37}, {'connected_gene': 'RNA5SP383', 'score': 12.42}, {'connected_gene': 'NEDD8-MDP1', 'score': 11.71}, {'connected_gene': 'NEDD8', 'score': 11.71}, {'connected_gene': 'GMPR2', 'score': 11.22}, {'connected_gene': 'CHMP4A', 'score': 10.9}, {'connected_gene': 'ENSG00000254692', 'score': 10.9}, {'connected_gene': 'MDP1', 'score': 10.9}, {'connected_gene': 'TM9SF1', 'score': 10.86}, {'connected_gene': 'BCL2L2-PABPN1', 'score': 10.83}, {'connected_gene': 'THTPA', 'score': 10.22}, {'connected_gene': 'SDR39U1', 'score': 9.86}, {'connected_gene': 'LOC102724814', 'score': 9.72}, {'connected_gene': 'CBLN3', 'score': 9.22}, {'connected_gene': 'RIPK3', 'score': 7.48}, {'connected_gene': 'IRF9', 'score': 4.27}, {'connected_gene': 'PSME1', 'score': 1.59}, {'connected_gene': 'DCAF11', 'score': 1.37}, {'connected_gene': 'PIR40275', 'score': 0.44}]
chr14	GH14I024237	24237775	24237804	0.2	[{'connected_gene': 'GMPR2', 'score': 0.44}, {'connected_gene': 'NEDD8', 'score': 0.44}, {'connected_gene': 'TINF2', 'score': 0.44}]
chr14	GH14I024235	24235215	24235364	0.38	[{'connected_gene': 'GMPR2', 'score': 0.77}, {'connected_gene': 'NEDD8', 'score': 0.77}, {'connected_gene': 'TINF2', 'score': 0.44}]
chr14	GH14I024230	24230854	24235093	2.07	[{'connected_gene': 'GMPR2', 'score': 550.77}, {'connected_gene': 'NEDD8-MDP1', 'score': 550.77}, {'connected_gene': 'NEDD8', 'score': 550.77}, {'connected_gene': 'TM9SF1', 'score': 18.96}, {'connected_gene': 'RNA5SP383', 'score': 15.93}, {'connected_gene': 'KHNYN', 'score': 15.67}, {'connected_gene': 'LOC102724814', 'score': 12.69}, {'connected_gene': 'TINF2', 'score': 12.61}, {'connected_gene': 'RNF31', 'score': 12.61}, {'connected_gene': 'MDP1', 'score': 10.1}, {'connected_gene': 'CIDEB', 'score': 9.89}, {'connected_gene': 'HOMEZ', 'score': 9.85}, {'connected_gene': 'TGM1', 'score': 9.83}, {'connected_gene': 'DHRS4-AS1', 'score': 5.57}]
chr14	GH14I024238	24238034	24239137	0.58	[{'connected_gene': 'TINF2', 'score': 0.77}, {'connected_gene': 'GMPR2', 'score': 0.44}, {'connected_gene': 'NEDD8', 'score': 0.44}]
chr14	GH14I024275	24275635	24275784	0.46	[{'connected_gene': 'TINF2', 'score': 11.74}, {'connected_gene': 'NEDD8-MDP1', 'score': 11.71}, {'connected_gene': 'NEDD8', 'score': 11.71}, {'connected_gene': 'DHRS1', 'score': 11.36}, {'connected_gene': 'NOP9', 'score': 11.36}, {'connected_gene': 'GMPR2', 'score': 11.22}, {'connected_gene': 'MDP1', 'score': 10.9}, {'connected_gene': 'CHMP4A', 'score': 10.89}, {'connected_gene': 'ENSG00000254692', 'score': 10.89}, {'connected_gene': 'TM9SF1', 'score': 10.86}, {'connected_gene': 'IPO4', 'score': 10.55}, {'connected_gene': 'TSSK4', 'score': 10.18}, {'connected_gene': 'KHNYN', 'score': 9.23}, {'connected_gene': 'CBLN3', 'score': 9.22}, {'connected_gene': 'RABGGTA', 'score': 0.77}, {'connected_gene': 'LOC102725044', 'score': 0.77}, {'connected_gene': 'PIR40275', 'score': 0.77}]
chr14	GH14I024277	24277001	24282199	1.21	[{'connected_gene': 'PIR40275', 'score': 550.77}, {'connected_gene': 'DHRS1', 'score': 39.77}, {'connected_gene': 'TINF2', 'score': 16.94}, {'connected_gene': 'NOP9', 'score': 12.92}, {'connected_gene': 'LTB4R2', 'score': 12.85}, {'connected_gene': 'LTB4R', 'score': 12.83}, {'connected_gene': 'CIDEB', 'score': 12.83}, {'connected_gene': 'GMPR2', 'score': 12.16}, {'connected_gene': 'NEDD8-MDP1', 'score': 12.16}, {'connected_gene': 'NEDD8', 'score': 12.16}, {'connected_gene': 'MDP1', 'score': 11.14}, {'connected_gene': 'CHMP4A', 'score': 11.13}, {'connected_gene': 'ENSG00000254692', 'score': 11.13}, {'connected_gene': 'TM9SF1', 'score': 11.1}, {'connected_gene': 'ADCY4', 'score': 10.8}, {'connected_gene': 'IPO4', 'score': 10.53}, {'connected_gene': 'REC8', 'score': 10.39}, {'connected_gene': 'TSSK4', 'score': 10.22}, {'connected_gene': 'IRF9', 'score': 3.96}, {'connected_gene': 'KHNYN', 'score': 2.93}, {'connected_gene': 'PSME1', 'score': 1.59}, {'connected_gene': 'DCAF11', 'score': 1.26}, {'connected_gene': 'LOC102725044', 'score': 0.44}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000355299	[[24701627, 24702053], [24702424, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708448]]	[[24702459, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24707984]]
ENST00000559836	[[24701647, 24701994], [24702424, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708448]]	[[24702459, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24707984]]
ENST00000561038	[[24701695, 24701994], [24702424, 24702546], [24702684, 24702804], [24703312, 24703447], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24708445]]	[[24702459, 24702546], [24702684, 24702804], [24703312, 24703318]]
ENST00000559287	[[24701840, 24702053], [24702424, 24702546], [24702684, 24702799], [24704942, 24705026], [24705172, 24705346], [24706247, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708413]]	[[24702459, 24702546], [24702684, 24702799], [24704942, 24704968]]
ENST00000560139	[[24701841, 24701994], [24702424, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705247], [24706276, 24706305]]	[[24702459, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705247], [24706276, 24706305]]
ENST00000559910	[[24701841, 24701994], [24702424, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705247], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708410]]	[[24702459, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705247], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24707984]]
ENST00000559801	[[24701847, 24701994], [24702424, 24702546], [24702684, 24702881]]	None
ENST00000561035	[[24701871, 24701994], [24702424, 24702546], [24702684, 24702804], [24703318, 24703447], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706493]]	[[24702459, 24702546], [24702684, 24702804], [24703318, 24703447], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706493]]
ENST00000559409	[[24701881, 24701994], [24702424, 24702546], [24702684, 24702792], [24704942, 24705026], [24705172, 24705346]]	[[24702459, 24702546], [24702684, 24702792], [24704942, 24705026], [24705172, 24705346]]
ENST00000558865	[[24701891, 24701994], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707593]]	[[24705343, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707593]]
ENST00000558279	[[24701955, 24702053], [24702684, 24702804], [24704942, 24705026], [24705172, 24705216]]	[[24702759, 24702804], [24704942, 24705026], [24705172, 24705216]]
ENST00000399440	[[24702077, 24702183], [24702424, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708448]]	[[24702459, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24707984]]
ENST00000558701	[[24702098, 24702183], [24702424, 24702546], [24702684, 24702799], [24704942, 24705022]]	None
ENST00000561130	[[24702103, 24702183], [24702424, 24702546], [24702684, 24702804], [24703312, 24703447], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706495]]	[[24702459, 24702546], [24702684, 24702804], [24703312, 24703318]]
ENST00000420554	[[24702106, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708448]]	[[24702405, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24707984]]
ENST00000558760	[[24702107, 24702546], [24702684, 24702804], [24703312, 24703447], [24704942, 24705026], [24705172, 24705211]]	[[24702405, 24702546], [24702684, 24702804], [24703312, 24703318]]
ENST00000559102	[[24702123, 24702546], [24702684, 24702799], [24704942, 24705026], [24705172, 24705271]]	[[24702405, 24702546], [24702684, 24702799], [24704942, 24704968]]
ENST00000348719	[[24702128, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24708445]]	[[24702459, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707984]]
ENST00000557854	[[24702128, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24708448]]	[[24702405, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707984]]
ENST00000559104	[[24702152, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705247], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708448]]	[[24702405, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705247], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24707984]]
ENST00000456667	[[24702153, 24702183], [24702424, 24702546], [24702684, 24702804], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708440]]	[[24702459, 24702546], [24702684, 24702804], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24707984]]
ENST00000559606	[[24704579, 24705026], [24705172, 24705346], [24706247, 24706358]]	None
ENST00000558483	[[24705301, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707832, 24708252]]	[[24705301, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707832, 24707905]]
ENST00000560517	[[24706180, 24706358], [24706450, 24706557], [24706725, 24707159]]	None
ENST00000559943	[[24706478, 24706557], [24706725, 24706768], [24707794, 24708032]]	[[24706478, 24706557], [24706725, 24706768], [24707794, 24707865]]
ENST00000558007	[[24707393, 24707611], [24707794, 24708045]]	None
ENST00000558748	[[24707451, 24707611], [24707794, 24707954], [24708111, 24708448]]	[[24707451, 24707611], [24707794, 24707954], [24708111, 24708210]]
ENST00000559479	[[24707536, 24707611], [24707794, 24708009], [24708163, 24708446]]	[[24707536, 24707611], [24707794, 24707984]]
ENST00000558932	[[24707584, 24707611], [24707802, 24708006]]	[[24707584, 24707611], [24707802, 24707984]]
ENST00000558788	[[24707794, 24707975], [24708111, 24708447]]	[[24707794, 24707975], [24708111, 24708210]]
NM_001002001	[[24701627, 24701994], [24702424, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708448]]	[[24702459, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24707984]]
NM_001283021	[[24701627, 24701994], [24702424, 24702546], [24702684, 24702804], [24703312, 24703447], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24708448]]	[[24703348, 24703447], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707984]]
NR_104265	[[24701627, 24702053], [24702424, 24702546], [24702684, 24702799], [24704942, 24705026], [24705172, 24705346], [24706247, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708448]]	None
NM_001002000	[[24701627, 24702053], [24702424, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708448]]	[[24702459, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24707984]]
NM_001283023	[[24702077, 24702183], [24702424, 24702546], [24702684, 24702804], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708448]]	[[24702459, 24702546], [24702684, 24702804], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24707984]]
NM_001002002	[[24702077, 24702183], [24702424, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708448]]	[[24702459, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24707984]]
NM_016576	[[24702077, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24708448]]	[[24702405, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707611], [24707794, 24707984]]
NM_001283022	[[24702077, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24708448]]	[[24702405, 24702546], [24702684, 24702804], [24704942, 24705026], [24705172, 24705346], [24706276, 24706358], [24706450, 24706557], [24706725, 24706768], [24707451, 24707984]]