PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000530711	[[361749, 362426], [367064, 367224], [374298, 374620]]	[[362258, 362426], [367064, 367224], [374298, 374620]]
ENST00000342640	[[362056, 362426], [367064, 367224], [371204, 371322], [372630, 372700], [373469, 373531], [373939, 374011], [374298, 374421], [375662, 376013]]	[[362199, 362426], [367064, 367224], [371204, 371322], [372630, 372700], [373469, 373531], [373939, 374011], [374298, 374421], [375662, 375970]]
ENST00000346878	[[362199, 362426], [367064, 367224], [371204, 371322], [372630, 372700], [373469, 373531], [374298, 374421], [375662, 375970]]	[[362199, 362426], [367064, 367224], [371204, 371322], [372630, 372700], [373469, 373531], [374298, 374421], [375662, 375970]]
ENST00000528213	[[367201, 367224], [371204, 371322], [372630, 372700], [373469, 373531], [373939, 374249]]	None
NM_016585	[[362056, 362426], [367064, 367224], [371204, 371322], [372630, 372700], [373469, 373531], [373939, 374011], [374298, 374421], [375662, 376013]]	[[362199, 362426], [367064, 367224], [371204, 371322], [372630, 372700], [373469, 373531], [373939, 374011], [374298, 374421], [375662, 375970]]
NM_199202	[[362056, 362426], [367064, 367224], [371204, 371322], [372630, 372700], [373469, 373531], [374298, 374421], [375662, 376013]]	[[362199, 362426], [367064, 367224], [371204, 371322], [372630, 372700], [373469, 373531], [374298, 374421], [375662, 375970]]

Promoter

Chrom	Start	End	Description
chr19	374052	374070	CAGE_peak_1_at_THEG_5end
chr19	374072	374083	CAGE_peak_3_at_THEG_5end
chr19	374095	374106	CAGE_peak_4_at_THEG_5end
chr19	375988	375996	CAGE_peak_5_at_THEG_5end
chr19	376011	376031	CAGE_peak_2_at_THEG_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I000282	282030	282499	0.46	[{'connected_gene': 'PLPP2', 'score': 15.44}, {'connected_gene': 'THEG', 'score': 11.37}, {'connected_gene': 'C2CD4C', 'score': 11.03}, {'connected_gene': 'VN2R11P', 'score': 0.77}]
chr19	GH19I000341	341955	345413	2.15	[{'connected_gene': 'MIER2', 'score': 559.02}, {'connected_gene': 'THEG', 'score': 11.55}, {'connected_gene': 'GC19M000319', 'score': 0.44}]
chr19	GH19I000417	417243	418286	0.38	[{'connected_gene': 'THEG', 'score': 11.62}, {'connected_gene': 'SHC2', 'score': 8.14}, {'connected_gene': 'C2CD4C', 'score': 6.16}, {'connected_gene': 'LOC101928450', 'score': 5.62}, {'connected_gene': 'PIR44542', 'score': 0.44}, {'connected_gene': 'PIR54633', 'score': 0.39}]
chr19	GH19I000376	376016	376075	0.5	[{'connected_gene': 'THEG', 'score': 550.77}, {'connected_gene': 'GC19M000365', 'score': 0.77}, {'connected_gene': 'GC19P000369', 'score': 0.44}]
chr19	GH19I000377	376636	376695	0.5	[{'connected_gene': 'THEG', 'score': 550.77}, {'connected_gene': 'GC19M000365', 'score': 550.77}, {'connected_gene': 'GC19P000369', 'score': 0.44}]
chr19	GH19I000281	281077	281835	0.54	[{'connected_gene': 'VN2R11P', 'score': 550.77}, {'connected_gene': 'GC19P000280', 'score': 550.77}, {'connected_gene': 'THEG', 'score': 11.37}, {'connected_gene': 'PLPP2', 'score': 11.34}, {'connected_gene': 'C2CD4C', 'score': 11.03}]
chr19	GH19I000280	280241	281011	0.49	[{'connected_gene': 'VN2R11P', 'score': 550.77}, {'connected_gene': 'GC19P000280', 'score': 550.77}, {'connected_gene': 'THEG', 'score': 11.37}, {'connected_gene': 'C2CD4C', 'score': 11.03}, {'connected_gene': 'WASH5P', 'score': 9.74}, {'connected_gene': 'PLPP2', 'score': 8.79}]
chr19	GH19I000605	604629	604764	0.48	[{'connected_gene': 'GC19P000606', 'score': 550.77}, {'connected_gene': 'THEG', 'score': 1.48}, {'connected_gene': 'LOC100420586', 'score': 0.39}, {'connected_gene': 'HCN2', 'score': 0.39}]
chr19	GH19I000371	371464	373077	0.49	[{'connected_gene': 'GC19P000369', 'score': 0.77}, {'connected_gene': 'THEG', 'score': 0.77}, {'connected_gene': 'GC19M000365', 'score': 0.44}]
chr19	GH19I000412	412090	412750	0.62	[{'connected_gene': 'PIR44542', 'score': 550.77}, {'connected_gene': 'THEG', 'score': 11.63}, {'connected_gene': 'PIR54633', 'score': 0.37}]