PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000244766	[[5998231, 5999437], [6002585, 6002730], [6006927, 6007200]]	[[5999208, 5999437], [6002585, 6002730], [6006927, 6006982]]
ENST00000495850	[[5998947, 5999437], [6002585, 6002730], [6003058, 6003196]]	None
NM_001278711	[[5998231, 5999437], [6002585, 6002730], [6003401, 6003506], [6003935, 6004277]]	[[5999208, 5999437], [6002585, 6002730], [6003401, 6003506], [6003935, 6003963]]
NM_016588	[[5998231, 5999437], [6002585, 6002730], [6006927, 6007633]]	[[5999208, 5999437], [6002585, 6002730], [6006927, 6006982]]
NM_001278710	[[5998231, 5999437], [6002585, 6002730], [6006927, 6007016], [6007719, 6007838]]	[[5999208, 5999437], [6002585, 6002730], [6006927, 6006982]]

Promoter

Chrom	Start	End	Description
chr6	6003157	6003191	CAGE_peak_9_at_NRN1_5end
chr6	6004249	6004271	CAGE_peak_3_at_NRN1_5end
chr6	6004273	6004340	CAGE_peak_2_at_NRN1_5end
chr6	6006989	6007000	CAGE_peak_8_at_NRN1_5end
chr6	6007064	6007075	CAGE_peak_5_at_NRN1_5end
chr6	6007096	6007107	CAGE_peak_4_at_NRN1_5end
chr6	6007111	6007181	CAGE_peak_1_at_NRN1_5end
chr6	6007215	6007226	CAGE_peak_6_at_NRN1_5end
chr6	6007745	6007795	CAGE_peak_7_at_NRN1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I005995	5995673	6000203	1.38	[{'connected_gene': 'NRN1', 'score': 11.66}, {'connected_gene': 'ENSG00000216360', 'score': 11.16}, {'connected_gene': 'LYRM4', 'score': 9.94}, {'connected_gene': 'LOC105374898', 'score': 0.77}, {'connected_gene': 'GC06P005986', 'score': 0.39}, {'connected_gene': 'GC06M005970', 'score': 0.39}]
chr6	GH06I005969	5969000	5969201	0.31	[{'connected_gene': 'NRN1', 'score': 11.39}, {'connected_gene': 'PKMP5', 'score': 0.77}, {'connected_gene': 'GC06P005953', 'score': 0.37}]
chr6	GH06I006005	6005481	6009461	2.28	[{'connected_gene': 'NRN1', 'score': 558.9}, {'connected_gene': 'LOC442155', 'score': 9.95}, {'connected_gene': 'PPP1R3G', 'score': 4.86}, {'connected_gene': 'GC06M005970', 'score': 0.77}, {'connected_gene': 'LOC105374898', 'score': 0.39}, {'connected_gene': 'GC06P005986', 'score': 0.34}]
chr6	GH06I006545	6545700	6547889	1.06	[{'connected_gene': 'NRN1', 'score': 11.32}, {'connected_gene': 'F13A1', 'score': 10.32}, {'connected_gene': 'LY86', 'score': 5.47}, {'connected_gene': 'GC06P006543', 'score': 0.77}, {'connected_gene': 'GC06M006539', 'score': 0.77}, {'connected_gene': 'LY86-AS1', 'score': 0.18}]
chr6	GH06I005506	5506079	5508066	0.92	[{'connected_gene': 'NRN1', 'score': 10.13}, {'connected_gene': 'GC06P005502', 'score': 0.77}, {'connected_gene': 'GC06M005498', 'score': 0.44}, {'connected_gene': 'FARS2', 'score': 0.07}]
chr6	GH06I006000	6000361	6000753	0.33	[{'connected_gene': 'NRN1', 'score': 8.59}, {'connected_gene': 'LOC105374898', 'score': 0.44}, {'connected_gene': 'GC06M005970', 'score': 0.44}, {'connected_gene': 'GC06P005986', 'score': 0.39}]
chr6	GH06I005988	5988860	5990062	0.2	[{'connected_gene': 'NRN1', 'score': 16.63}, {'connected_gene': 'LOC105374898', 'score': 0.77}, {'connected_gene': 'GC06P005986', 'score': 0.77}, {'connected_gene': 'GC06M005970', 'score': 0.34}]
chr6	GH06I006001	6001747	6002101	0.39	[{'connected_gene': 'NRN1', 'score': 8.18}, {'connected_gene': 'LOC105374898', 'score': 0.44}, {'connected_gene': 'GC06M005970', 'score': 0.44}, {'connected_gene': 'GC06P005986', 'score': 0.37}]
chr6	GH06I006003	6003103	6005075	1.56	[{'connected_gene': 'NRN1', 'score': 560.01}, {'connected_gene': 'GC06M005970', 'score': 0.44}, {'connected_gene': 'LOC105374898', 'score': 0.39}, {'connected_gene': 'GC06P005986', 'score': 0.37}]
chr6	GH06I005470	5470965	5471400	0.87	[{'connected_gene': 'NRN1', 'score': 10.93}, {'connected_gene': 'LOC101927972', 'score': 0.39}, {'connected_gene': 'GC06P005502', 'score': 0.29}, {'connected_gene': 'FARS2', 'score': 0.08}]
chr6	GH06I005471	5471660	5472548	0.54	[{'connected_gene': 'NRN1', 'score': 10.93}, {'connected_gene': 'LOC101927972', 'score': 7.97}, {'connected_gene': 'GC06P005502', 'score': 0.29}, {'connected_gene': 'FARS2', 'score': 0.08}]
chr6	GH06I005665	5665093	5666177	0.2	[{'connected_gene': 'NRN1', 'score': 9.82}, {'connected_gene': 'GC06P005668', 'score': 0.77}, {'connected_gene': 'GC06P005659', 'score': 0.44}, {'connected_gene': 'GC06M005657', 'score': 0.34}, {'connected_gene': 'LOC101927950', 'score': 0.31}, {'connected_gene': 'FARS2', 'score': 0.05}]
chr6	GH06I005979	5979498	5980600	0.73	[{'connected_gene': 'NRN1', 'score': 20.67}, {'connected_gene': 'GC06P005976', 'score': 0.77}, {'connected_gene': 'GC06P005986', 'score': 0.44}, {'connected_gene': 'GC06M005970', 'score': 0.29}]
chr6	GH06I005991	5991355	5991441	0.23	[{'connected_gene': 'LOC105374898', 'score': 550.77}, {'connected_gene': 'NRN1', 'score': 14.79}, {'connected_gene': 'GC06P005986', 'score': 0.44}, {'connected_gene': 'GC06M005970', 'score': 0.37}]
chr6	GH06I005992	5991516	5991836	0.4	[{'connected_gene': 'LOC105374898', 'score': 550.77}, {'connected_gene': 'NRN1', 'score': 2.77}, {'connected_gene': 'GC06P005986', 'score': 0.44}, {'connected_gene': 'GC06M005970', 'score': 0.37}]
chr6	GH06I005994	5994145	5994411	0.34	[{'connected_gene': 'LOC105374898', 'score': 550.77}, {'connected_gene': 'NRN1', 'score': 8.63}, {'connected_gene': 'GC06P005986', 'score': 0.44}, {'connected_gene': 'GC06M005970', 'score': 0.37}]
chr6	GH06I006542	6542825	6544214	0.64	[{'connected_gene': 'GC06P006543', 'score': 550.77}, {'connected_gene': 'GC06M006539', 'score': 550.77}, {'connected_gene': 'NRN1', 'score': 11.32}, {'connected_gene': 'F13A1', 'score': 10.32}, {'connected_gene': 'LY86', 'score': 5.22}, {'connected_gene': 'LY86-AS1', 'score': 0.18}]
chr6	GH06I005513	5513523	5513789	0.66	[{'connected_gene': 'GC06M005498', 'score': 550.77}, {'connected_gene': 'NRN1', 'score': 9.61}, {'connected_gene': 'GC06P005502', 'score': 0.39}, {'connected_gene': 'FARS2', 'score': 0.07}]
chr6	GH06I005831	5831064	5833199	0.51	[{'connected_gene': 'GC06P005834', 'score': 550.77}, {'connected_gene': 'NRN1', 'score': 9.73}, {'connected_gene': 'ENSG00000216360', 'score': 0.39}]
chr6	GH06I006467	6467428	6467621	0.79	[{'connected_gene': 'GC06M006465', 'score': 550.77}, {'connected_gene': 'F13A1', 'score': 10.63}, {'connected_gene': 'NRN1', 'score': 7.65}, {'connected_gene': 'GC06P006509', 'score': 0.26}, {'connected_gene': 'LY86-AS1', 'score': 0.1}]
chr6	GH06I006515	6515708	6516473	0.75	[{'connected_gene': 'GC06P006517', 'score': 550.77}, {'connected_gene': 'F13A1', 'score': 10.44}, {'connected_gene': 'NRN1', 'score': 10.37}, {'connected_gene': 'ENSG00000261211', 'score': 5.41}, {'connected_gene': 'GC06P006509', 'score': 0.44}, {'connected_gene': 'LY86-AS1', 'score': 0.14}]