PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000522317	[[140613080, 140613844], [140623579, 140624917], [140630500, 140631342], [140714952, 140715284]]	[[140630500, 140631342], [140714952, 140715235]]
ENST00000303015	[[140624803, 140624917], [140630500, 140631342], [140714952, 140715299]]	[[140630500, 140631342], [140714952, 140715235]]
ENST00000520439	[[140630248, 140631342], [140714952, 140715299]]	[[140630500, 140631342], [140714952, 140715235]]
ENST00000523477	[[140613081, 140613844], [140623579, 140624917], [140628628, 140629248]]	None
ENST00000523653	[[140613320, 140613844], [140614255, 140614307]]	None
ENST00000519923	[[140624568, 140624917], [140628056, 140628290]]	None
NR_104210	[[140613080, 140613844], [140623579, 140624917], [140630500, 140631342], [140714952, 140715299]]	None
NM_001282534	[[140629363, 140631342], [140714952, 140715299]]	[[140630500, 140631342], [140714952, 140715235]]

Promoter

Chrom	Start	End	Description
chr8	140614315	140614330	CAGE_peak_2_at_KCNK9_5end
chr8	140614358	140614378	CAGE_peak_1_at_KCNK9_5end
chr8	140715294	140715304	CAGE_peak_4_at_KCNK9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I140118	140118639	140119601	0.63	[{'connected_gene': 'KCNK9', 'score': 10.5}, {'connected_gene': 'GC08M140101', 'score': 0.37}, {'connected_gene': 'GC08P140241', 'score': 0.13}, {'connected_gene': 'TRAPPC9', 'score': 0.05}]
chr8	GH08I139784	139784419	139785774	0.6	[{'connected_gene': 'KCNK9', 'score': 10.9}, {'connected_gene': 'PIR41566', 'score': 0.44}, {'connected_gene': 'GC08P139797', 'score': 0.39}, {'connected_gene': 'TRAPPC9', 'score': 0.03}]
chr8	GH08I140213	140213370	140214366	0.43	[{'connected_gene': 'KCNK9', 'score': 10.2}, {'connected_gene': 'GC08P140241', 'score': 0.31}, {'connected_gene': 'GC08M140101', 'score': 0.14}, {'connected_gene': 'TRAPPC9', 'score': 0.07}]
chr8	GH08I140150	140150801	140151400	0.63	[{'connected_gene': 'KCNK9', 'score': 11.04}, {'connected_gene': 'GC08M140101', 'score': 0.25}, {'connected_gene': 'GC08P140241', 'score': 0.16}, {'connected_gene': 'TRAPPC9', 'score': 0.06}]
chr8	GH08I139841	139841500	139842966	1.01	[{'connected_gene': 'KCNK9', 'score': 10.46}, {'connected_gene': 'GC08P139797', 'score': 0.26}, {'connected_gene': 'LOC105375781', 'score': 0.2}, {'connected_gene': 'TRAPPC9', 'score': 0.03}]
chr8	GH08I139697	139697960	139698334	0.23	[{'connected_gene': 'KCNK9', 'score': 11.57}, {'connected_gene': 'LOC105375777', 'score': 0.77}, {'connected_gene': 'GC08M139662', 'score': 0.39}]
chr8	GH08I140152	140152791	140154989	0.84	[{'connected_gene': 'KCNK9', 'score': 10.63}, {'connected_gene': 'C8orf17', 'score': 10.11}, {'connected_gene': 'GC08M140101', 'score': 0.23}, {'connected_gene': 'GC08P140241', 'score': 0.17}, {'connected_gene': 'TRAPPC9', 'score': 0.06}]
chr8	GH08I139720	139720201	139720401	0.9	[{'connected_gene': 'KCNK9', 'score': 0.37}, {'connected_gene': 'GC08P139745', 'score': 0.31}]
chr8	GH08I140098	140098062	140099888	1.63	[{'connected_gene': 'PEG13', 'score': 550.77}, {'connected_gene': 'KCNK9', 'score': 16.55}, {'connected_gene': 'TRAPPC9', 'score': 1.68}, {'connected_gene': 'GC08P140091', 'score': 0.44}]
chr8	GH08I139703	139703104	139703163	0.73	[{'connected_gene': 'LOC105375777', 'score': 550.77}, {'connected_gene': 'KCNK9', 'score': 550.77}, {'connected_gene': 'GC08P139745', 'score': 0.26}]
chr8	GH08I139705	139705800	139706201	1.44	[{'connected_gene': 'LOC105375777', 'score': 0.77}, {'connected_gene': 'KCNK9', 'score': 0.77}, {'connected_gene': 'GC08P139745', 'score': 0.28}]
chr8	GH08I139706	139706698	139706847	0.52	[{'connected_gene': 'LOC105375777', 'score': 0.77}, {'connected_gene': 'KCNK9', 'score': 0.77}, {'connected_gene': 'GC08P139745', 'score': 0.28}]
chr8	GH08I140105	140105525	140107335	0.65	[{'connected_gene': 'C8orf17', 'score': 10.39}, {'connected_gene': 'KCNK9', 'score': 10.28}, {'connected_gene': 'GC08M140101', 'score': 0.77}, {'connected_gene': 'GC08P140241', 'score': 0.12}, {'connected_gene': 'TRAPPC9', 'score': 0.05}]
chr8	GH08I140108	140108600	140108801	0.38	[{'connected_gene': 'C8orf17', 'score': 10.39}, {'connected_gene': 'KCNK9', 'score': 10.28}, {'connected_gene': 'GC08M140101', 'score': 0.44}, {'connected_gene': 'GC08P140241', 'score': 0.12}, {'connected_gene': 'TRAPPC9', 'score': 0.05}]
chr8	GH08I139969	139969308	139973344	0.73	[{'connected_gene': 'C8orf17', 'score': 11.51}, {'connected_gene': 'KCNK9', 'score': 10.18}, {'connected_gene': 'GC08P140000', 'score': 0.31}, {'connected_gene': 'TRAPPC9', 'score': 0.04}]
chr8	GH08I139738	139737618	139737747	0.2	[{'connected_gene': 'GC08P139745', 'score': 0.44}, {'connected_gene': 'KCNK9', 'score': 0.29}, {'connected_gene': 'TRAPPC9', 'score': 0.03}]
chr8	GH08I140091	140090727	140091111	0.31	[{'connected_gene': 'GC08P140091', 'score': 550.77}, {'connected_gene': 'KCNK9', 'score': 10.8}, {'connected_gene': 'PIR39979', 'score': 0.39}, {'connected_gene': 'TRAPPC9', 'score': 0.05}]
chr8	GH08I140090	140090462	140090651	0.38	[{'connected_gene': 'GC08P140091', 'score': 550.77}, {'connected_gene': 'KCNK9', 'score': 10.8}, {'connected_gene': 'PIR39979', 'score': 0.39}, {'connected_gene': 'TRAPPC9', 'score': 0.05}]
chr8	GH08I139737	139737060	139737152	0.25	[{'connected_gene': 'GC08P139745', 'score': 0.44}, {'connected_gene': 'KCNK9', 'score': 0.29}, {'connected_gene': 'TRAPPC9', 'score': 0.03}]
chr8	GH08I140092	140092074	140092218	0.24	[{'connected_gene': 'GC08P140091', 'score': 550.77}, {'connected_gene': 'KCNK9', 'score': 10.8}, {'connected_gene': 'PEG13', 'score': 0.44}, {'connected_gene': 'TRAPPC9', 'score': 0.05}]
chr8	GH08I140045	140045955	140049756	1.3	[{'connected_gene': 'PIR39366', 'score': 550.77}, {'connected_gene': 'KCNK9', 'score': 1.92}, {'connected_gene': 'LOC100421256', 'score': 0.44}, {'connected_gene': 'TRAPPC9', 'score': 0.05}]