PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr3	157823323	157823328	CAGE_peak_17_at_RSRC1_5end
chr3	157823609	157823667	CAGE_peak_3_at_RSRC1_5end
chr3	157827856	157827916	CAGE_peak_1_at_RSRC1_5end
chr3	157828152	157828222	CAGE_peak_2_at_RSRC1_5end
chr3	157839897	157839901	CAGE_peak_4_at_RSRC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I158352	158352630	158352796	0.74	[{'connected_gene': 'MFSD1', 'score': 1.86}, {'connected_gene': 'LOC100422604', 'score': 0.37}, {'connected_gene': 'GC03P158403', 'score': 0.23}, {'connected_gene': 'RSRC1', 'score': 0.07}]
chr3	GH03I158101	158101490	158107934	1.95	[{'connected_gene': 'SHOX2', 'score': 561.21}, {'connected_gene': 'RSRC1', 'score': 550.77}, {'connected_gene': 'CCNL1', 'score': 9.81}, {'connected_gene': 'MLF1', 'score': 5.48}, {'connected_gene': 'ENSG00000240207', 'score': 4.27}, {'connected_gene': 'GFM1', 'score': 4.19}, {'connected_gene': 'ENSG00000242536', 'score': 0.37}]
chr3	GH03I158160	158160953	158161543	0.52	[{'connected_gene': 'SHOX2', 'score': 0.23}, {'connected_gene': 'RSRC1', 'score': 0.22}, {'connected_gene': 'GC03M158221', 'score': 0.21}]
chr3	GH03I158097	158097201	158098670	1.12	[{'connected_gene': 'SHOX2', 'score': 10.87}, {'connected_gene': 'MLF1', 'score': 5.24}, {'connected_gene': 'RSRC1', 'score': 0.44}, {'connected_gene': 'ENSG00000242536', 'score': 0.44}]
chr3	GH03I158329	158329602	158330400	0.2	[{'connected_gene': 'SHOX2', 'score': 7.04}, {'connected_gene': 'MLF1', 'score': 5.14}, {'connected_gene': 'LOC100422604', 'score': 0.44}, {'connected_gene': 'RPL15P6', 'score': 0.23}, {'connected_gene': 'RSRC1', 'score': 0.07}]
chr3	GH03I158164	158164514	158166174	1.06	[{'connected_gene': 'RSRC1', 'score': 0.22}, {'connected_gene': 'GC03M158221', 'score': 0.22}, {'connected_gene': 'SHOX2', 'score': 0.22}]
chr3	GH03I158152	158152200	158152401	0.31	[{'connected_gene': 'RSRC1', 'score': 0.25}, {'connected_gene': 'SHOX2', 'score': 0.25}, {'connected_gene': 'GC03M158221', 'score': 0.19}]
chr3	GH03I158109	158109450	158111294	2.1	[{'connected_gene': 'RSRC1', 'score': 560.65}, {'connected_gene': 'CCNL1', 'score': 15.76}, {'connected_gene': 'LXN', 'score': 10.15}, {'connected_gene': 'SHOX2', 'score': 0.77}, {'connected_gene': 'GC03M158221', 'score': 0.14}]
chr3	GH03I158185	158185521	158186853	0.91	[{'connected_gene': 'RSRC1', 'score': 8.72}, {'connected_gene': 'MLF1', 'score': 7.76}, {'connected_gene': 'GC03M158221', 'score': 0.28}, {'connected_gene': 'SHOX2', 'score': 0.18}]
chr3	GH03I158133	158133085	158134392	0.6	[{'connected_gene': 'RSRC1', 'score': 8.87}, {'connected_gene': 'MLF1', 'score': 6.78}, {'connected_gene': 'SHOX2', 'score': 0.31}, {'connected_gene': 'GC03M158221', 'score': 0.17}]
chr3	GH03I158118	158118340	158118399	1.15	[{'connected_gene': 'RSRC1', 'score': 550.39}, {'connected_gene': 'MLF1', 'score': 6.24}, {'connected_gene': 'SHOX2', 'score': 0.39}, {'connected_gene': 'GC03M158221', 'score': 0.14}]
chr3	GH03I157918	157918667	157920252	0.31	[{'connected_gene': 'RSRC1', 'score': 5.34}, {'connected_gene': 'RN7SKP46', 'score': 0.39}, {'connected_gene': 'GC03P157877', 'score': 0.26}]
chr3	GH03I158528	158528062	158528791	0.78	[{'connected_gene': 'MLF1', 'score': 10.58}, {'connected_gene': 'RSRC1', 'score': 3.96}, {'connected_gene': 'RPS12P7', 'score': 0.29}, {'connected_gene': 'LOC100996447', 'score': 0.26}]
chr3	GH03I158307	158307957	158309595	0.6	[{'connected_gene': 'MLF1', 'score': 9.05}, {'connected_gene': 'ENSG00000240207', 'score': 6.02}, {'connected_gene': 'LOC100422604', 'score': 0.31}, {'connected_gene': 'RPL15P6', 'score': 0.29}, {'connected_gene': 'RSRC1', 'score': 0.08}]
chr3	GH03I158271	158271822	158272677	0.71	[{'connected_gene': 'MLF1', 'score': 9.19}, {'connected_gene': 'RPL15P6', 'score': 0.77}, {'connected_gene': 'GC03M158221', 'score': 0.25}, {'connected_gene': 'RSRC1', 'score': 0.1}]
chr3	GH03I158508	158508741	158509065	0.52	[{'connected_gene': 'RPS12P7', 'score': 0.39}, {'connected_gene': 'LOC100996447', 'score': 0.21}, {'connected_gene': 'RSRC1', 'score': 0.05}]
chr3	GH03I158917	158917592	158918611	0.56	[{'connected_gene': 'GC03M158916', 'score': 550.77}, {'connected_gene': 'IQCJ', 'score': 11.38}, {'connected_gene': 'GFM1', 'score': 5.21}, {'connected_gene': 'RSRC1', 'score': 5.01}, {'connected_gene': 'IQCJ-SCHIP1', 'score': 0.26}]
chr3	GH03I158167	158167720	158168626	1.13	[{'connected_gene': 'ENSG00000240207', 'score': 5.98}, {'connected_gene': 'GC03M158221', 'score': 0.22}, {'connected_gene': 'RSRC1', 'score': 0.21}, {'connected_gene': 'SHOX2', 'score': 0.21}]
chr3	GH03I158419	158419920	158421779	0.93	[{'connected_gene': 'PIR31105', 'score': 550.77}, {'connected_gene': 'GC03P158422', 'score': 550.77}, {'connected_gene': 'RSRC1', 'score': 8.46}, {'connected_gene': 'MLF1', 'score': 6.6}, {'connected_gene': 'ENSG00000271778', 'score': 4.8}, {'connected_gene': 'SHOX2', 'score': 4.59}, {'connected_gene': 'GC03P158403', 'score': 0.37}]
chr3	GH03I157922	157921278	157921989	0.31	[{'connected_gene': 'ENSG00000242536', 'score': 5.24}, {'connected_gene': 'RSRC1', 'score': 4.53}, {'connected_gene': 'RN7SKP46', 'score': 0.44}, {'connected_gene': 'GC03P157877', 'score': 0.26}]
chr3	GH03I158483	158483764	158484540	0.6	[{'connected_gene': 'GC03P158484', 'score': 550.77}, {'connected_gene': 'PIR31105', 'score': 0.21}, {'connected_gene': 'GC03P158422', 'score': 0.21}, {'connected_gene': 'RSRC1', 'score': 0.05}]
chr3	GH03I158471	158471672	158471881	0.7	[{'connected_gene': 'GC03P158484', 'score': 0.39}, {'connected_gene': 'PIR31105', 'score': 0.25}, {'connected_gene': 'GC03P158422', 'score': 0.25}, {'connected_gene': 'RSRC1', 'score': 0.05}]
chr3	GH03I158432	158432027	158432393	0.4	[{'connected_gene': 'PIR31105', 'score': 0.39}, {'connected_gene': 'GC03P158422', 'score': 0.39}, {'connected_gene': 'GC03P158484', 'score': 0.23}, {'connected_gene': 'RSRC1', 'score': 0.05}]
chr3	GH03I158460	158460159	158460426	0.4	[{'connected_gene': 'ENSG00000240207', 'score': 5.94}, {'connected_gene': 'GC03P158484', 'score': 0.34}, {'connected_gene': 'PIR31105', 'score': 0.28}, {'connected_gene': 'GC03P158422', 'score': 0.28}, {'connected_gene': 'RSRC1', 'score': 0.05}]
chr3	GH03I158470	158470901	158471632	0.56	[{'connected_gene': 'ENSG00000240207', 'score': 5.71}, {'connected_gene': 'GC03P158484', 'score': 0.39}, {'connected_gene': 'PIR31105', 'score': 0.25}, {'connected_gene': 'GC03P158422', 'score': 0.25}, {'connected_gene': 'RSRC1', 'score': 0.05}]
chr3	GH03I158385	158385672	158386008	0.66	[{'connected_gene': 'GC03P158403', 'score': 0.37}, {'connected_gene': 'LOC100422604', 'score': 0.25}, {'connected_gene': 'RSRC1', 'score': 0.06}]
chr3	GH03I158367	158367861	158369043	1.08	[{'connected_gene': 'GC03P158403', 'score': 0.29}, {'connected_gene': 'LOC100422604', 'score': 0.29}, {'connected_gene': 'RSRC1', 'score': 0.07}]
chr3	GH03I158233	158233926	158234155	0.69	[{'connected_gene': 'GC03M158221', 'score': 0.39}, {'connected_gene': 'RPL15P6', 'score': 0.26}, {'connected_gene': 'RSRC1', 'score': 0.13}]
chr3	GH03I158291	158291733	158293047	0.6	[{'connected_gene': 'ENSG00000240207', 'score': 6.02}, {'connected_gene': 'RPL15P6', 'score': 0.37}, {'connected_gene': 'LOC100422604', 'score': 0.26}, {'connected_gene': 'RSRC1', 'score': 0.09}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000480820	[[157823643, 157823799], [157839891, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262311]]	[[157839893, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262064]]
ENST00000295930	[[157827840, 157828000], [157839891, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262624]]	[[157839893, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262064]]
ENST00000471994	[[157827856, 157828012], [157839891, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178751]]	[[157839893, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178751]]
ENST00000464171	[[157827877, 157828000], [157839891, 157840087], [157841654, 157841780], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158263519]]	[[157839893, 157840087], [157841654, 157841780], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262064]]
ENST00000312179	[[157827894, 157827986], [157839891, 157840087], [157841654, 157841780], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262582]]	[[157839893, 157840087], [157841654, 157841780], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262064]]
ENST00000475278	[[157827895, 157827986], [157839891, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261971, 158262314]]	[[157839893, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261971, 158262064]]
ENST00000480119	[[157827917, 157828000], [157839891, 157840087], [157841654, 157841780], [157920860, 157921034], [157943445, 157943522], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262232]]	[[157839893, 157840087], [157841654, 157841780], [157920860, 157921034], [157943445, 157943522], [158015827, 158015856]]
ENST00000471911	[[157827944, 157828000], [157839891, 157840087], [157841654, 157841780], [158015827, 158015864], [158072645, 158072697], [158178723, 158178798], [158187132, 158187521]]	None
ENST00000476899	[[157828190, 157828393], [157839891, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697]]	[[157839893, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697]]
ENST00000477788	[[157839942, 157840087], [157841654, 157841780], [157849874, 157850052], [157920860, 157921034], [158015827, 158015864], [158072645, 158072740]]	[[157839942, 157840087], [157841654, 157841780], [157849874, 157849941]]
ENST00000482822	[[157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261476]]	[[157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261309]]
ENST00000496268	[[157920926, 157921034], [158015827, 158015864], [158020470, 158021364]]	None
ENST00000494002	[[157825577, 157825760], [157839891, 157840087], [157841654, 157841780], [157920860, 157921034]]	[[157839893, 157840087], [157841654, 157841780], [157920860, 157921034]]
ENST00000468344	[[157827937, 157828012], [157839891, 157840087], [157841654, 157841780], [157854533, 157854687]]	None
NM_001271834	[[157827840, 157827986], [157839891, 157840087], [157841654, 157841780], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262624]]	[[157839893, 157840087], [157841654, 157841780], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262064]]
NM_016625	[[157827840, 157828000], [157839891, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262624]]	[[157839893, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262064]]
NM_001271838	[[157827840, 157828012], [157839891, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262624]]	[[157839893, 157840087], [157841654, 157841780], [157920860, 157921034], [158015827, 158015864], [158072645, 158072697], [158178723, 158178792], [158254880, 158254987], [158261123, 158261276], [158261971, 158262064]]