PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000279545	[[9980076, 9980225], [9984911, 9985010], [9994919, 9995032], [9997016, 9997606]]	[[9980140, 9980225], [9984911, 9985010], [9994919, 9994972]]
ENST00000354855	[[9980076, 9980225], [9984911, 9985010], [9997016, 9997606]]	[[9980140, 9980225], [9984911, 9985010], [9997016, 9997027]]
ENST00000324214	[[9980076, 9980225], [9984911, 9985010], [9994407, 9994550], [9994919, 9995032], [9997016, 9997606]]	[[9980140, 9980225], [9984911, 9985010], [9994407, 9994550], [9994919, 9995032], [9997016, 9997125]]
ENST00000279544	[[9980076, 9980225], [9984911, 9985010], [9985898, 9986048], [9994407, 9994550], [9994919, 9995032], [9997016, 9997606]]	[[9980140, 9980225], [9984911, 9985010], [9985898, 9986048], [9994407, 9994550], [9994919, 9995032], [9997016, 9997125]]
ENST00000537723	[[9980116, 9980225], [9984911, 9985010], [9985898, 9986048], [9997016, 9997256]]	[[9980140, 9980225], [9984911, 9985010], [9985898, 9986048], [9997016, 9997027]]
ENST00000545196	[[9980116, 9980225], [9984911, 9985010], [9985898, 9986048], [9994900, 9995032], [9997016, 9997256]]	[[9980140, 9980225], [9984911, 9985010], [9985898, 9986048], [9994900, 9994941]]
ENST00000535631	[[9994409, 9994550], [9994900, 9995032], [9997016, 9997591]]	[[9994409, 9994550], [9994900, 9994972]]
NM_001291823	[[9980076, 9980225], [9984911, 9985010], [9997016, 9997604]]	[[9980140, 9980225], [9984911, 9985010], [9997016, 9997027]]
NR_120305	[[9980076, 9980225], [9984911, 9985010], [9994919, 9995032], [9997016, 9997604]]	None
NM_001291822	[[9980076, 9980225], [9984911, 9985010], [9994407, 9994550], [9994919, 9995032], [9997016, 9997604]]	[[9980140, 9980225], [9984911, 9985010], [9994407, 9994550], [9994919, 9995032], [9997016, 9997125]]
NM_016523	[[9980076, 9980225], [9984911, 9985010], [9985898, 9986048], [9994407, 9994550], [9994919, 9995032], [9997016, 9997604]]	[[9980140, 9980225], [9984911, 9985010], [9985898, 9986048], [9994407, 9994550], [9994919, 9995032], [9997016, 9997125]]

Promoter

Chrom	Start	End	Description
chr12	9980007	9980012	CAGE_peak_5_at_KLRF1_5end
chr12	9980015	9980039	CAGE_peak_2_at_KLRF1_5end
chr12	9980051	9980062	CAGE_peak_4_at_KLRF1_5end
chr12	9980069	9980087	CAGE_peak_1_at_KLRF1_5end
chr12	9980113	9980133	CAGE_peak_3_at_KLRF1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I009756	9756259	9766298	2.69	[{'connected_gene': 'CD69', 'score': 576.83}, {'connected_gene': 'CLECL1', 'score': 22.54}, {'connected_gene': 'KLRF1', 'score': 17.17}, {'connected_gene': 'CLEC7A', 'score': 15.09}, {'connected_gene': 'OLR1', 'score': 10.55}, {'connected_gene': 'KLRB1', 'score': 8.76}, {'connected_gene': 'CLEC12A', 'score': 8.02}, {'connected_gene': 'ENSG00000213443', 'score': 6.47}, {'connected_gene': 'DDX12P', 'score': 5.72}, {'connected_gene': 'PZP', 'score': 5.15}, {'connected_gene': 'CLEC2B', 'score': 5.09}, {'connected_gene': 'KLRF2', 'score': 4.52}, {'connected_gene': 'GABARAPL1', 'score': 3.49}, {'connected_gene': 'CLEC2D', 'score': 2.99}, {'connected_gene': 'LOC105369653', 'score': 0.44}]
chr12	GH12I009940	9940066	9941322	0.43	[{'connected_gene': 'CLEC7A', 'score': 11.79}, {'connected_gene': 'KLRF1', 'score': 11.79}, {'connected_gene': 'CLEC9A', 'score': 10.58}, {'connected_gene': 'LOC102724020', 'score': 10.58}, {'connected_gene': 'ENSG00000255958', 'score': 9.67}, {'connected_gene': 'GABARAPL1', 'score': 9.67}, {'connected_gene': 'LINC02470', 'score': 5.64}, {'connected_gene': 'CLEC2A', 'score': 0.44}]
chr12	GH12I009739	9739002	9743842	1.55	[{'connected_gene': 'CLEC7A', 'score': 21.44}, {'connected_gene': 'CLEC2D', 'score': 17.27}, {'connected_gene': 'KLRB1', 'score': 15.45}, {'connected_gene': 'CLECL1', 'score': 15.1}, {'connected_gene': 'ENSG00000214776', 'score': 11.61}, {'connected_gene': 'CD69', 'score': 11.38}, {'connected_gene': 'ENSG00000213443', 'score': 11.04}, {'connected_gene': 'CLEC2B', 'score': 5.21}, {'connected_gene': 'KLRF1', 'score': 4.5}, {'connected_gene': 'GC12P009745', 'score': 0.77}]
chr12	GH12I009813	9813601	9814914	1.21	[{'connected_gene': 'KLRF1', 'score': 10.61}, {'connected_gene': 'KLRD1', 'score': 9.78}, {'connected_gene': 'CD69', 'score': 5.79}, {'connected_gene': 'KLRB1', 'score': 4.59}, {'connected_gene': 'A2MP1', 'score': 4.31}, {'connected_gene': 'CLEC2B', 'score': 2.62}, {'connected_gene': 'KLRF2', 'score': 2.21}, {'connected_gene': 'LOC100419929', 'score': 0.77}, {'connected_gene': 'LOC105369653', 'score': 0.25}]
chr12	GH12I009829	9829897	9830209	0.69	[{'connected_gene': 'KLRF1', 'score': 34.83}, {'connected_gene': 'KLRD1', 'score': 26.67}, {'connected_gene': 'MAGOHB', 'score': 13.08}, {'connected_gene': 'TAS2R10', 'score': 11.48}, {'connected_gene': 'CLEC12A', 'score': 10.71}, {'connected_gene': 'CLEC12A-AS1', 'score': 10.71}, {'connected_gene': 'KLRB1', 'score': 8.76}, {'connected_gene': 'CD69', 'score': 4.6}, {'connected_gene': 'ENSG00000255882', 'score': 0.28}]
chr12	GH12I009826	9826736	9827994	0.88	[{'connected_gene': 'KLRF1', 'score': 550.77}, {'connected_gene': 'LOC100419929', 'score': 0.44}]
chr12	GH12I009932	9932358	9932417	0.5	[{'connected_gene': 'CLEC2A', 'score': 550.77}, {'connected_gene': 'CLEC12A-AS1', 'score': 12.26}, {'connected_gene': 'KLRF1', 'score': 12.1}, {'connected_gene': 'CLEC9A', 'score': 10.61}, {'connected_gene': 'LOC102724020', 'score': 10.61}, {'connected_gene': 'GC12P009886', 'score': 0.25}]
chr12	GH12I010268	10268202	10268278	0.22	[{'connected_gene': 'KLRD1', 'score': 7.62}, {'connected_gene': 'KLRF1', 'score': 4.73}, {'connected_gene': 'KLRK1', 'score': 3.94}, {'connected_gene': 'KLRC2', 'score': 2.91}, {'connected_gene': 'KLRC1', 'score': 2.89}, {'connected_gene': 'KLRC4-KLRK1', 'score': 2.18}, {'connected_gene': 'KLRC4', 'score': 2.07}, {'connected_gene': 'LOC105369656', 'score': 0.34}]
chr12	GH12I010289	10289157	10289354	0.61	[{'connected_gene': 'KLRD1', 'score': 18.11}, {'connected_gene': 'KLRF1', 'score': 15.08}, {'connected_gene': 'KLRK1', 'score': 11.38}, {'connected_gene': 'ENSG00000255958', 'score': 10.63}, {'connected_gene': 'GABARAPL1', 'score': 10.62}, {'connected_gene': 'KLRC4-KLRK1', 'score': 9.55}, {'connected_gene': 'KLRC4', 'score': 9.14}, {'connected_gene': 'KLRC3', 'score': 7.37}, {'connected_gene': 'KLRC1', 'score': 4.32}, {'connected_gene': 'KLRC2', 'score': 2.67}, {'connected_gene': 'YBX3', 'score': 1.64}, {'connected_gene': 'CLEC2B', 'score': 1.5}, {'connected_gene': 'CLEC1B', 'score': 1.28}, {'connected_gene': 'LOC105369656', 'score': 0.77}]
chr12	GH12I010303	10303296	10306827	1.49	[{'connected_gene': 'KLRD1', 'score': 578.61}, {'connected_gene': 'KLRC4-KLRK1', 'score': 21.27}, {'connected_gene': 'KLRF1', 'score': 19.95}, {'connected_gene': 'KLRC3', 'score': 15.58}, {'connected_gene': 'KLRK1', 'score': 14.36}, {'connected_gene': 'KLRC4', 'score': 13.69}, {'connected_gene': 'GABARAPL1', 'score': 11.06}, {'connected_gene': 'ENSG00000255958', 'score': 11.06}, {'connected_gene': 'KLRC1', 'score': 3.1}, {'connected_gene': 'KLRC2', 'score': 3.01}, {'connected_gene': 'LOC105369656', 'score': 0.39}, {'connected_gene': 'ENSG00000256288', 'score': 0.29}]
chr12	GH12I009605	9605276	9608523	1.03	[{'connected_gene': 'KLRB1', 'score': 552.53}, {'connected_gene': 'CLEC2D', 'score': 24.71}, {'connected_gene': 'ENSG00000214776', 'score': 14.81}, {'connected_gene': 'LOC642846', 'score': 13.48}, {'connected_gene': 'KLRF2', 'score': 12.5}, {'connected_gene': 'DDX12P', 'score': 11.77}, {'connected_gene': 'LOC374443', 'score': 8.89}, {'connected_gene': 'LINC02367', 'score': 6.23}, {'connected_gene': 'KLRF1', 'score': 2.03}, {'connected_gene': 'PIR60914', 'score': 0.28}, {'connected_gene': 'ENSG00000284634', 'score': 0.1}]
chr12	GH12I009614	9614867	9618149	0.9	[{'connected_gene': 'LOC374443', 'score': 557.6}, {'connected_gene': 'CLEC2D', 'score': 39.27}, {'connected_gene': 'KLRB1', 'score': 23.06}, {'connected_gene': 'KLRF1', 'score': 15.11}, {'connected_gene': 'ENSG00000214776', 'score': 13.73}, {'connected_gene': 'ENSG00000257027', 'score': 11.46}, {'connected_gene': 'CD69', 'score': 10.53}, {'connected_gene': 'CLECL1', 'score': 10.5}, {'connected_gene': 'CLEC2B', 'score': 2.77}, {'connected_gene': 'ENSG00000284634', 'score': 0.1}]
chr12	GH12I010016	10016482	10018980	1.02	[{'connected_gene': 'CLEC12A', 'score': 31.42}, {'connected_gene': 'CLEC12A-AS1', 'score': 11.66}, {'connected_gene': 'CLEC7A', 'score': 11.0}, {'connected_gene': 'KLRF1', 'score': 10.35}, {'connected_gene': 'LINC02470', 'score': 4.99}, {'connected_gene': 'CLEC1B', 'score': 0.77}, {'connected_gene': 'GC12P010023', 'score': 0.44}, {'connected_gene': 'CLEC12B', 'score': 0.44}, {'connected_gene': 'LOC102724020', 'score': 0.39}]
chr12	GH12I009646	9646723	9656743	2.29	[{'connected_gene': 'LOC105369728', 'score': 550.77}, {'connected_gene': 'CLEC2D', 'score': 39.35}, {'connected_gene': 'LOC374443', 'score': 32.68}, {'connected_gene': 'DDX12P', 'score': 18.78}, {'connected_gene': 'KLRB1', 'score': 17.77}, {'connected_gene': 'CLECL1', 'score': 17.05}, {'connected_gene': 'CLEC7A', 'score': 16.86}, {'connected_gene': 'M6PR', 'score': 15.96}, {'connected_gene': 'CLEC12A', 'score': 15.45}, {'connected_gene': 'LOC642846', 'score': 13.69}, {'connected_gene': 'ENSG00000213443', 'score': 12.59}, {'connected_gene': 'ENSG00000214776', 'score': 12.04}, {'connected_gene': 'PHC1', 'score': 11.55}, {'connected_gene': 'EIF2S3B', 'score': 10.79}, {'connected_gene': 'LINC00612', 'score': 9.98}, {'connected_gene': 'RIMKLB', 'score': 9.8}, {'connected_gene': 'CD69', 'score': 9.09}, {'connected_gene': 'CLEC2B', 'score': 6.11}, {'connected_gene': 'KLRA1P', 'score': 5.23}, {'connected_gene': 'KLRF1', 'score': 3.79}, {'connected_gene': 'ENSG00000272917', 'score': 0.44}, {'connected_gene': 'ENSG00000284634', 'score': 0.08}]