PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000455990	[[60280457, 60280482], [60280707, 60280852], [60287529, 60287615], [60294451, 60294524], [60297834, 60297885], [60299076, 60299209], [60301016, 60301022]]	[[60280789, 60280852], [60287529, 60287615], [60294451, 60294524], [60297834, 60297885], [60299076, 60299209], [60301016, 60301022]]
ENST00000371208	[[60280532, 60280852], [60287529, 60287615], [60294451, 60294524], [60297834, 60297885], [60299076, 60299209], [60301016, 60301084], [60302544, 60302607], [60305979, 60306063], [60309103, 60309270], [60312716, 60312857], [60313986, 60314188], [60314744, 60314855], [60324099, 60324187], [60324656, 60324717], [60325859, 60326000], [60328455, 60328549], [60330303, 60330338], [60330834, 60330917], [60331543, 60331644], [60333921, 60334023], [60336713, 60336782], [60338466, 60342050]]	[[60280789, 60280852], [60287529, 60287615], [60294451, 60294524], [60297834, 60297885], [60299076, 60299209], [60301016, 60301084], [60302544, 60302607], [60305979, 60306063], [60309103, 60309270], [60312716, 60312857], [60313986, 60314188], [60314744, 60314855], [60324099, 60324187], [60324656, 60324717], [60325859, 60326000], [60328455, 60328549], [60330303, 60330338], [60330834, 60330917], [60331543, 60331644], [60333921, 60334023], [60336713, 60336782], [60338466, 60338637]]
ENST00000465876	[[60280843, 60281023], [60287529, 60287615], [60294451, 60294524], [60297834, 60297885], [60299076, 60299209], [60301016, 60301084], [60302544, 60302607], [60305979, 60306063], [60309103, 60309270], [60312716, 60312857], [60313986, 60314188], [60314744, 60314855], [60324099, 60324187], [60324656, 60324717], [60325859, 60326000], [60328455, 60328549], [60331543, 60331644], [60333921, 60334023], [60336713, 60336782], [60338466, 60338679]]	None
ENST00000395561	[[60282303, 60282390], [60287529, 60287615], [60294451, 60294524], [60297834, 60297885], [60299076, 60299209], [60301016, 60301084], [60302544, 60302607], [60305979, 60306063], [60309103, 60309270], [60312716, 60312857], [60313986, 60314188], [60314744, 60314855], [60324099, 60324187], [60324656, 60324717], [60325859, 60326000], [60328455, 60328549], [60330303, 60330338], [60330834, 60330917], [60331543, 60331644], [60333921, 60334023], [60336713, 60336782], [60338466, 60338642]]	[[60287592, 60287615], [60294451, 60294524], [60297834, 60297885], [60299076, 60299209], [60301016, 60301084], [60302544, 60302607], [60305979, 60306063], [60309103, 60309270], [60312716, 60312857], [60313986, 60314188], [60314744, 60314855], [60324099, 60324187], [60324656, 60324717], [60325859, 60326000], [60328455, 60328549], [60330303, 60330338], [60330834, 60330917], [60331543, 60331644], [60333921, 60334023], [60336713, 60336782], [60338466, 60338637]]
ENST00000474695	[[60325954, 60326000], [60328455, 60328549], [60329496, 60329540]]	None
ENST00000466803	[[60330310, 60330917], [60331543, 60331644], [60333921, 60334023], [60336713, 60336782], [60338466, 60338650]]	None
ENST00000491135	[[60336548, 60336782], [60338466, 60338654]]	None
NM_015888	[[60280532, 60280852], [60287529, 60287615], [60294451, 60294524], [60297834, 60297885], [60299076, 60299209], [60301016, 60301084], [60302544, 60302607], [60305979, 60306063], [60309103, 60309270], [60312716, 60312857], [60313986, 60314188], [60314744, 60314855], [60324099, 60324187], [60324656, 60324717], [60325859, 60326000], [60328455, 60328549], [60330303, 60330338], [60330834, 60330917], [60331543, 60331644], [60333921, 60334023], [60336713, 60336782], [60338466, 60342050]]	[[60280789, 60280852], [60287529, 60287615], [60294451, 60294524], [60297834, 60297885], [60299076, 60299209], [60301016, 60301084], [60302544, 60302607], [60305979, 60306063], [60309103, 60309270], [60312716, 60312857], [60313986, 60314188], [60314744, 60314855], [60324099, 60324187], [60324656, 60324717], [60325859, 60326000], [60328455, 60328549], [60330303, 60330338], [60330834, 60330917], [60331543, 60331644], [60333921, 60334023], [60336713, 60336782], [60338466, 60338637]]

Promoter

Chrom	Start	End	Description
chr1	60280532	60280546	CAGE_peak_6_at_HOOK1_5end
chr1	60280571	60280590	CAGE_peak_3_at_HOOK1_5end
chr1	60280611	60280663	CAGE_peak_1_at_HOOK1_5end
chr1	60280668	60280699	CAGE_peak_2_at_HOOK1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I059906	59906767	59907951	0.38	[{'connected_gene': 'HOOK1', 'score': 14.45}, {'connected_gene': 'GC01P059903', 'score': 0.77}, {'connected_gene': 'CYP2J2', 'score': 0.37}]
chr1	GH01I059814	59814207	59815961	2.01	[{'connected_gene': 'HOOK1', 'score': 558.38}, {'connected_gene': 'LOC105378758', 'score': 550.77}]
chr1	GH01I059832	59832871	59834837	0.2	[{'connected_gene': 'HOOK1', 'score': 7.38}, {'connected_gene': 'GC01P059852', 'score': 0.37}, {'connected_gene': 'LOC105378758', 'score': 0.37}]
chr1	GH01I059777	59777349	59777800	0.51	[{'connected_gene': 'HOOK1', 'score': 5.3}, {'connected_gene': 'LOC101926944', 'score': 0.77}, {'connected_gene': 'ENSG00000226883', 'score': 0.39}, {'connected_gene': 'FGGY', 'score': 0.04}]
chr1	GH01I059768	59768836	59769551	0.52	[{'connected_gene': 'HOOK1', 'score': 5.48}, {'connected_gene': 'LOC101926944', 'score': 0.77}, {'connected_gene': 'ENSG00000226883', 'score': 0.37}, {'connected_gene': 'MIR4711', 'score': 0.28}, {'connected_gene': 'FGGY', 'score': 0.04}]
chr1	GH01I059761	59761174	59762065	0.2	[{'connected_gene': 'HOOK1', 'score': 10.68}, {'connected_gene': 'LOC101926944', 'score': 0.39}, {'connected_gene': 'MIR4711', 'score': 0.31}, {'connected_gene': 'ENSG00000226883', 'score': 0.31}, {'connected_gene': 'FGGY', 'score': 0.04}]
chr1	GH01I059758	59758883	59760178	1.05	[{'connected_gene': 'HOOK1', 'score': 10.67}, {'connected_gene': 'LOC101926944', 'score': 0.39}, {'connected_gene': 'MIR4711', 'score': 0.31}, {'connected_gene': 'ENSG00000226883', 'score': 0.31}, {'connected_gene': 'FGGY', 'score': 0.04}]
chr1	GH01I059750	59750249	59751398	1.05	[{'connected_gene': 'HOOK1', 'score': 9.87}, {'connected_gene': 'MIR4711', 'score': 0.37}, {'connected_gene': 'LOC101926944', 'score': 0.34}, {'connected_gene': 'FGGY', 'score': 0.05}]
chr1	GH01I059752	59752601	59752801	0.43	[{'connected_gene': 'HOOK1', 'score': 9.87}, {'connected_gene': 'MIR4711', 'score': 0.37}, {'connected_gene': 'LOC101926944', 'score': 0.34}, {'connected_gene': 'FGGY', 'score': 0.05}]
chr1	GH01I059856	59856094	59858312	0.87	[{'connected_gene': 'HOOK1', 'score': 17.66}, {'connected_gene': 'GC01P059852', 'score': 0.77}, {'connected_gene': 'GC01M059897', 'score': 0.26}]
chr1	GH01I059879	59879669	59880836	0.63	[{'connected_gene': 'HOOK1', 'score': 15.27}, {'connected_gene': 'GC01M059897', 'score': 0.37}, {'connected_gene': 'GC01P059852', 'score': 0.31}]
chr1	GH01I059966	59966786	59967838	0.99	[{'connected_gene': 'C1orf87', 'score': 10.18}, {'connected_gene': 'CYP2J2', 'score': 5.27}, {'connected_gene': 'HOOK1', 'score': 4.53}, {'connected_gene': 'RN7SL475P', 'score': 0.44}, {'connected_gene': 'GC01M059975', 'score': 0.44}]
chr1	GH01I059816	59816001	59816200	0.54	[{'connected_gene': 'LOC105378758', 'score': 550.77}, {'connected_gene': 'HOOK1', 'score': 550.77}, {'connected_gene': 'GC01P059852', 'score': 0.28}]