PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000490675	[[50378540, 50378916], [50379004, 50379130], [50379240, 50379362], [50379827, 50379879]]	None
ENST00000231749	[[50378540, 50378916], [50379004, 50379130], [50379240, 50379362], [50379445, 50379571], [50379827, 50380000], [50380348, 50380449], [50380548, 50380637], [50380737, 50380875], [50380993, 50381047], [50381164, 50381281], [50382554, 50382663], [50382918, 50384283]]	[[50378840, 50378916], [50379004, 50379130], [50379240, 50379362], [50379445, 50379571], [50379827, 50380000], [50380348, 50380449], [50380548, 50380637], [50380737, 50380875], [50380993, 50381047], [50381164, 50381281], [50382554, 50382663], [50382918, 50383010]]
ENST00000360165	[[50378544, 50378916], [50379004, 50379130], [50379240, 50379362], [50379445, 50379571], [50379827, 50380086], [50380548, 50380637], [50380737, 50380875], [50380993, 50381047], [50381164, 50381281], [50382554, 50382663], [50382918, 50383163]]	[[50378840, 50378916], [50379004, 50379130], [50379240, 50379362], [50379445, 50379571], [50379827, 50380086], [50380548, 50380637], [50380737, 50380875], [50380993, 50381047], [50381164, 50381281], [50382554, 50382663], [50382918, 50383010]]
ENST00000475688	[[50378545, 50378916], [50379004, 50379130], [50379240, 50379362], [50379445, 50380599]]	None
ENST00000442887	[[50379467, 50379571], [50379827, 50380000], [50380348, 50380449], [50380548, 50380637], [50380737, 50380875], [50380993, 50381047], [50381164, 50381281], [50382554, 50382663], [50382965, 50383152]]	[[50379467, 50379571], [50379827, 50380000], [50380348, 50380449], [50380548, 50380637], [50380737, 50380875], [50380993, 50381047], [50381164, 50381281], [50382554, 50382626]]
ENST00000443080	[[50379952, 50380000], [50380348, 50380449], [50380548, 50380637], [50380993, 50381047], [50381164, 50381281], [50382554, 50382667], [50382918, 50383103]]	[[50382645, 50382667], [50382918, 50383010]]
ENST00000478269	[[50380599, 50380875], [50380993, 50381047], [50381164, 50381467]]	None
ENST00000431869	[[50380831, 50380875], [50380993, 50381047], [50381164, 50381281], [50382554, 50382667], [50382918, 50383152]]	[[50382645, 50382667], [50382918, 50383010]]
ENST00000468182	[[50382269, 50382389], [50382554, 50382663], [50382918, 50383112]]	None
NM_015896	[[50378536, 50378916], [50379004, 50379130], [50379240, 50379362], [50379445, 50379571], [50379827, 50380000], [50380348, 50380449], [50380548, 50380637], [50380737, 50380875], [50380993, 50381047], [50381164, 50381281], [50382554, 50382663], [50382918, 50383177]]	[[50378840, 50378916], [50379004, 50379130], [50379240, 50379362], [50379445, 50379571], [50379827, 50380000], [50380348, 50380449], [50380548, 50380637], [50380737, 50380875], [50380993, 50381047], [50381164, 50381281], [50382554, 50382663], [50382918, 50383010]]
NM_001308379	[[50378536, 50378916], [50379004, 50379130], [50379240, 50379362], [50379445, 50379571], [50379827, 50380086], [50380548, 50380637], [50380737, 50380875], [50380993, 50381047], [50381164, 50381281], [50382554, 50382663], [50382918, 50383177]]	[[50378840, 50378916], [50379004, 50379130], [50379240, 50379362], [50379445, 50379571], [50379827, 50380086], [50380548, 50380637], [50380737, 50380875], [50380993, 50381047], [50381164, 50381281], [50382554, 50382663], [50382918, 50383010]]

Promoter

Chrom	Start	End	Description
chr3	50383076	50383081	CAGE_peak_2_at_ZMYND10_5end
chr3	50383096	50383168	CAGE_peak_1_at_ZMYND10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I050346	50346850	50347918	0.92	[{'connected_gene': 'ZMYND10', 'score': 550.77}, {'connected_gene': 'HYAL1', 'score': 7.07}, {'connected_gene': 'NPRL2', 'score': 0.77}, {'connected_gene': 'CYB561D2', 'score': 0.77}]
chr3	GH03I050345	50345170	50346400	1.34	[{'connected_gene': 'ZMYND10', 'score': 550.77}, {'connected_gene': 'ZMYND10-AS1', 'score': 0.77}]
chr3	GH03I050332	50332973	50342370	2.48	[{'connected_gene': 'RASSF1', 'score': 562.92}, {'connected_gene': 'RASSF1-AS1', 'score': 550.77}, {'connected_gene': 'HYAL3', 'score': 39.23}, {'connected_gene': 'CYB561D2', 'score': 21.55}, {'connected_gene': 'RBM6', 'score': 17.0}, {'connected_gene': 'SEMA3F-AS1', 'score': 14.76}, {'connected_gene': 'NICN1', 'score': 14.15}, {'connected_gene': 'RBM5', 'score': 13.8}, {'connected_gene': 'RHOA-IT1', 'score': 13.55}, {'connected_gene': 'TMEM115', 'score': 13.19}, {'connected_gene': 'IFRD2', 'score': 10.98}, {'connected_gene': 'LSMEM2', 'score': 10.94}, {'connected_gene': 'HEMK1', 'score': 9.72}, {'connected_gene': 'HYAL1', 'score': 8.59}, {'connected_gene': 'SEMA3F', 'score': 4.45}, {'connected_gene': 'ENSG00000230454', 'score': 3.99}, {'connected_gene': 'SEMA3B', 'score': 2.05}, {'connected_gene': 'GC03P050334', 'score': 0.77}, {'connected_gene': 'ZMYND10-AS1', 'score': 0.77}, {'connected_gene': 'ZMYND10', 'score': 0.44}]
chr3	GH03I050453	50453991	50454160	0.24	[{'connected_gene': 'LOC105377082', 'score': 550.77}, {'connected_gene': 'ZMYND10', 'score': 39.29}, {'connected_gene': 'C3orf18', 'score': 29.58}, {'connected_gene': 'GNAI2', 'score': 7.21}, {'connected_gene': 'HYAL3', 'score': 2.51}, {'connected_gene': 'NAT6', 'score': 2.48}, {'connected_gene': 'RNA5SP131', 'score': 0.29}, {'connected_gene': 'CACNA2D2', 'score': 0.23}]
chr3	GH03I049872	49872028	49874434	1.02	[{'connected_gene': 'RBM6', 'score': 42.74}, {'connected_gene': 'ZMYND10', 'score': 11.19}, {'connected_gene': 'GNAI2', 'score': 2.89}, {'connected_gene': 'HYAL3', 'score': 1.61}, {'connected_gene': 'NAT6', 'score': 1.6}, {'connected_gene': 'ACTBP13', 'score': 0.77}, {'connected_gene': 'CAMKV', 'score': 0.77}, {'connected_gene': 'GC03P049762', 'score': 0.14}, {'connected_gene': 'GC03P049763', 'score': 0.14}, {'connected_gene': 'GC03P049421', 'score': 0.05}]
chr3	GH03I050342	50342410	50342740	0.4	[{'connected_gene': 'ZMYND10-AS1', 'score': 550.77}, {'connected_gene': 'RASSF1', 'score': 550.77}, {'connected_gene': 'ZMYND10', 'score': 0.77}]