PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000360117	[[64126510, 64126663], [64129414, 64129556], [64139554, 64139714], [64150776, 64150903], [64151625, 64151752], [64152242, 64152338], [64166701, 64166957]]	[[64152319, 64152338], [64166701, 64166957]]
ENST00000344930	[[64126575, 64126663], [64139554, 64139714], [64151625, 64151752], [64152242, 64152338], [64166701, 64171404]]	[[64152319, 64152338], [64166701, 64169034]]
ENST00000423627	[[64139550, 64139714], [64150776, 64150903], [64151625, 64151752], [64152242, 64152338], [64166701, 64171399]]	[[64152319, 64152338], [64166701, 64169034]]
ENST00000395391	[[64149732, 64150903], [64151625, 64151752], [64152242, 64152338], [64166701, 64171401]]	[[64152319, 64152338], [64166701, 64169034]]
NR_104149	[[64126460, 64126663], [64139554, 64139714], [64144712, 64148208]]	None
NR_104148	[[64126460, 64126663], [64129414, 64129556], [64139554, 64139714], [64144712, 64148208]]	None
NM_001282360	[[64126460, 64126663], [64151625, 64151752], [64166701, 64171960]]	[[64126660, 64126663], [64151625, 64151752], [64166701, 64169034]]
NM_001282359	[[64126460, 64126663], [64151625, 64151752], [64152242, 64152338], [64166701, 64171960]]	[[64126660, 64126663], [64151625, 64151752], [64152242, 64152338], [64166701, 64169034]]
NM_001013746	[[64126460, 64126663], [64139554, 64139714], [64151625, 64151752], [64152242, 64152338], [64166701, 64171960]]	[[64152319, 64152338], [64166701, 64169034]]
NM_016220	[[64126460, 64126663], [64129414, 64129556], [64139554, 64139714], [64150776, 64150903], [64151625, 64151752], [64152242, 64152338], [64166701, 64171960]]	[[64152319, 64152338], [64166701, 64169034]]

Promoter

Chrom	Start	End	Description
chr7	64126496	64126498	CAGE_peak_3_at_ZNF107_5end
chr7	64126503	64126528	CAGE_peak_1_at_ZNF107_5end
chr7	64126535	64126559	CAGE_peak_2_at_ZNF107_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I064792	64792738	64795548	2.02	[{'connected_gene': 'ZNF138', 'score': 556.91}, {'connected_gene': 'EEF1DP4', 'score': 42.26}, {'connected_gene': 'GABPAP', 'score': 25.65}, {'connected_gene': 'GTF2IP14', 'score': 17.2}, {'connected_gene': 'ERV3-1', 'score': 6.15}, {'connected_gene': 'ZNF107', 'score': 5.97}, {'connected_gene': 'ENSG00000234338', 'score': 5.81}, {'connected_gene': 'ENSG00000277206', 'score': 0.31}]
chr7	GH07I064312	64312437	64315601	1.9	[{'connected_gene': 'ZNF736', 'score': 562.4}, {'connected_gene': 'GTF2IP14', 'score': 11.78}, {'connected_gene': 'ENSG00000227113', 'score': 10.71}, {'connected_gene': 'YWHAEP1', 'score': 9.96}, {'connected_gene': 'ZNF727', 'score': 9.74}, {'connected_gene': 'GUSBP6', 'score': 8.81}, {'connected_gene': 'ZNF107', 'score': 5.2}, {'connected_gene': 'SEPHS1P1', 'score': 5.03}, {'connected_gene': 'GC07M064314', 'score': 0.77}, {'connected_gene': 'LOC105375322', 'score': 0.44}]
chr7	GH07I064541	64541195	64542427	0.63	[{'connected_gene': 'ZNF107', 'score': 14.16}, {'connected_gene': 'ZNF680P1', 'score': 7.17}, {'connected_gene': 'ZNF138', 'score': 5.47}, {'connected_gene': 'BNIP3P42', 'score': 0.44}, {'connected_gene': 'ZNF680', 'score': 0.34}, {'connected_gene': 'HNRNPCP7', 'score': 0.26}]
chr7	GH07I064459	64459463	64460724	0.57	[{'connected_gene': 'ZNF107', 'score': 13.64}, {'connected_gene': 'ZNF680P1', 'score': 0.44}, {'connected_gene': 'VN1R40P', 'score': 0.37}]
chr7	GH07I064463	64463223	64464399	0.77	[{'connected_gene': 'ZNF107', 'score': 11.92}, {'connected_gene': 'ZNF680P1', 'score': 0.44}, {'connected_gene': 'VN1R40P', 'score': 0.37}]
chr7	GH07I064558	64558007	64560904	0.79	[{'connected_gene': 'ZNF107', 'score': 8.86}, {'connected_gene': 'YWHAEP1', 'score': 7.42}, {'connected_gene': 'ZNF680P1', 'score': 7.13}, {'connected_gene': 'ZNF680', 'score': 0.77}, {'connected_gene': 'BNIP3P42', 'score': 0.44}]
chr7	GH07I064664	64664855	64668054	2.01	[{'connected_gene': 'ZNF107', 'score': 598.0}, {'connected_gene': 'CCT6P3', 'score': 14.24}, {'connected_gene': 'GTF2IP14', 'score': 11.79}, {'connected_gene': 'ZNF736', 'score': 11.72}, {'connected_gene': 'LOC441239', 'score': 10.82}, {'connected_gene': 'ERV3-1', 'score': 10.39}, {'connected_gene': 'SEPHS1P1', 'score': 6.34}, {'connected_gene': 'ZNF138', 'score': 5.43}, {'connected_gene': 'MIR6839', 'score': 0.39}]
chr7	GH07I064679	64679120	64679179	0.5	[{'connected_gene': 'ZNF107', 'score': 564.59}, {'connected_gene': 'MIR6839', 'score': 550.77}, {'connected_gene': 'BNIP3P11', 'score': 0.44}]
chr7	GH07I064991	64991118	64991177	0.61	[{'connected_gene': 'ZNF117', 'score': 561.76}, {'connected_gene': 'GUSB', 'score': 12.52}, {'connected_gene': 'ZNF107', 'score': 12.05}, {'connected_gene': 'ERV3-1', 'score': 11.84}, {'connected_gene': 'ZNF736', 'score': 11.71}, {'connected_gene': 'LOC441239', 'score': 10.89}, {'connected_gene': 'LOC84214', 'score': 10.06}, {'connected_gene': 'VN1R43P', 'score': 0.37}]
chr7	GH07I064562	64562001	64563800	1.98	[{'connected_gene': 'ZNF680', 'score': 550.77}, {'connected_gene': 'ZNF107', 'score': 14.28}, {'connected_gene': 'CCT6P3', 'score': 14.23}, {'connected_gene': 'GTF2IP14', 'score': 11.78}, {'connected_gene': 'ZNF736', 'score': 11.73}, {'connected_gene': 'GABPAP', 'score': 10.21}, {'connected_gene': 'ZNF117', 'score': 5.17}, {'connected_gene': 'LOC644387', 'score': 4.53}, {'connected_gene': 'BNIP3P42', 'score': 0.39}]
chr7	GH07I064561	64561201	64561400	0.2	[{'connected_gene': 'ZNF680', 'score': 550.77}, {'connected_gene': 'ZNF107', 'score': 5.59}, {'connected_gene': 'BNIP3P42', 'score': 0.44}]
chr7	GH07I065373	65373188	65375322	2.02	[{'connected_gene': 'ZNF92', 'score': 550.77}, {'connected_gene': 'GTF2IP14', 'score': 48.26}, {'connected_gene': 'GUSB', 'score': 23.35}, {'connected_gene': 'CCT6P1', 'score': 13.01}, {'connected_gene': 'ZNF107', 'score': 12.19}, {'connected_gene': 'CCT6P3', 'score': 10.89}, {'connected_gene': 'ERV3-1', 'score': 10.4}, {'connected_gene': 'ENSG00000238124', 'score': 0.17}]
chr7	GH07I064877	64877201	64877801	0.68	[{'connected_gene': 'ZNF273', 'score': 7.41}, {'connected_gene': 'ZNF117', 'score': 6.58}, {'connected_gene': 'ZNF107', 'score': 4.31}, {'connected_gene': 'LOC441239', 'score': 0.39}]
chr7	GH07I064685	64685253	64690544	0.75	[{'connected_gene': 'BNIP3P11', 'score': 550.77}, {'connected_gene': 'ZNF107', 'score': 37.49}, {'connected_gene': 'SEPHS1P1', 'score': 6.35}, {'connected_gene': 'GC07P064707', 'score': 0.37}]
chr7	GH07I064569	64569401	64570400	0.63	[{'connected_gene': 'LOC100129293', 'score': 550.77}, {'connected_gene': 'ZNF107', 'score': 13.31}, {'connected_gene': 'ZNF680P1', 'score': 6.79}, {'connected_gene': 'ZNF138', 'score': 5.47}, {'connected_gene': 'LOC100133092', 'score': 0.77}]
chr7	GH07I065510	65510188	65510317	0.6	[{'connected_gene': 'ENSG00000226767', 'score': 550.77}, {'connected_gene': 'ZNF107', 'score': 5.37}, {'connected_gene': 'PIR53398', 'score': 0.39}, {'connected_gene': 'LOC101929322', 'score': 0.25}]
chr7	GH07I064305	64305921	64308540	1.65	[{'connected_gene': 'GC07P064309', 'score': 550.77}, {'connected_gene': 'LOC105375322', 'score': 550.77}, {'connected_gene': 'PIR31902', 'score': 550.77}, {'connected_gene': 'ZNF736', 'score': 550.77}, {'connected_gene': 'GUSBP6', 'score': 9.77}, {'connected_gene': 'ZNF680', 'score': 9.01}, {'connected_gene': 'YWHAEP1', 'score': 7.64}, {'connected_gene': 'ZNF680P1', 'score': 7.4}, {'connected_gene': 'TRIM60P18', 'score': 6.91}, {'connected_gene': 'SEPHS1P1', 'score': 5.16}, {'connected_gene': 'CCT6P3', 'score': 4.73}, {'connected_gene': 'ZNF107', 'score': 3.89}, {'connected_gene': 'LOC105375323', 'score': 0.39}]