PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370658	[[63985855, 63990505], [63990926, 63991125], [63995491, 63995658], [64004817, 64004950], [64029818, 64029882]]	[[63990407, 63990505], [63990926, 63991125], [63995491, 63995658], [64004817, 64004950], [64029818, 64029848]]
ENST00000485906	[[63989287, 63989332], [63990926, 63991125], [63995491, 63995658], [64004817, 64004950], [64029818, 64029882]]	[[63989287, 63989332], [63990926, 63991125], [63995491, 63995658], [64004817, 64004950], [64029818, 64029848]]
ENST00000370657	[[63989540, 63991125], [63995491, 63995658], [64004817, 64004950], [64029818, 64029882]]	[[63989925, 63991125], [63995491, 63995658], [64004817, 64004950], [64029818, 64029848]]
NM_016571	[[63985855, 63991125], [63995491, 63995658], [64004817, 64004950], [64029818, 64029882]]	[[63989925, 63991125], [63995491, 63995658], [64004817, 64004950], [64029818, 64029848]]
NM_001143940	[[63985855, 63990505], [63990926, 63991125], [63995491, 63995658], [64004817, 64004950], [64029818, 64029882]]	[[63990407, 63990505], [63990926, 63991125], [63995491, 63995658], [64004817, 64004950], [64029818, 64029848]]

Promoter

Chrom	Start	End	Description
chr6	64029879	64029891	CAGE_peak_1_at_LGSN_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I063522	63522716	63522865	0.76	[{'connected_gene': 'PTP4A1', 'score': 550.77}, {'connected_gene': 'LGSN', 'score': 5.3}, {'connected_gene': 'GC06M063529', 'score': 0.44}]
chr6	GH06I063518	63518332	63520006	0.88	[{'connected_gene': 'PTP4A1', 'score': 0.77}, {'connected_gene': 'GC06P063496', 'score': 0.34}, {'connected_gene': 'LGSN', 'score': 0.25}]
chr6	GH06I063236	63236596	63236745	0.43	[{'connected_gene': 'FKBP1C', 'score': 12.08}, {'connected_gene': 'LGSN', 'score': 4.76}, {'connected_gene': 'LOC100128610', 'score': 0.44}, {'connected_gene': 'GC06P063252', 'score': 0.37}, {'connected_gene': 'GC06P062884', 'score': 0.05}, {'connected_gene': 'GC06P062882', 'score': 0.05}, {'connected_gene': 'GC06P062883', 'score': 0.05}, {'connected_gene': 'GC06P062885', 'score': 0.05}]
chr6	GH06I063456	63456389	63461214	1.19	[{'connected_gene': 'LGSN', 'score': 18.7}, {'connected_gene': 'PTP4A1', 'score': 3.1}, {'connected_gene': 'GC06M063463', 'score': 0.44}, {'connected_gene': 'GC06M063427', 'score': 0.37}, {'connected_gene': 'GC06M063429', 'score': 0.37}, {'connected_gene': 'GC06M063428', 'score': 0.37}, {'connected_gene': 'GC06M063421', 'score': 0.37}]
chr6	GH06I063501	63501711	63502844	0.43	[{'connected_gene': 'LGSN', 'score': 17.46}, {'connected_gene': 'GC06P063496', 'score': 0.44}, {'connected_gene': 'PTP4A1', 'score': 0.37}]
chr6	GH06I063568	63568059	63568540	0.31	[{'connected_gene': 'LGSN', 'score': 550.77}, {'connected_gene': 'ENSG00000266680', 'score': 0.77}, {'connected_gene': 'PTP4A1', 'score': 0.25}]
chr6	GH06I063562	63562786	63567198	1.11	[{'connected_gene': 'LGSN', 'score': 9.75}, {'connected_gene': 'GC06P063560', 'score': 0.77}, {'connected_gene': 'PTP4A1', 'score': 0.26}]
chr6	GH06I063526	63526848	63530581	1.41	[{'connected_gene': 'LGSN', 'score': 17.12}, {'connected_gene': 'GC06M063529', 'score': 0.77}, {'connected_gene': 'PTP4A1', 'score': 0.44}]
chr6	GH06I063567	63567512	63567863	0.31	[{'connected_gene': 'LGSN', 'score': 550.77}, {'connected_gene': 'GC06P063560', 'score': 0.44}, {'connected_gene': 'PTP4A1', 'score': 0.25}]
chr6	GH06I063509	63509079	63511768	1.16	[{'connected_gene': 'LGSN', 'score': 17.29}, {'connected_gene': 'ENSG00000236345', 'score': 9.43}, {'connected_gene': 'PTP4A1', 'score': 1.6}, {'connected_gene': 'GC06P063496', 'score': 0.39}]
chr6	GH06I063515	63515190	63517758	0.93	[{'connected_gene': 'LGSN', 'score': 16.99}, {'connected_gene': 'PTP4A1', 'score': 0.44}, {'connected_gene': 'GC06P063496', 'score': 0.34}]
chr6	GH06I063476	63476436	63476585	0.66	[{'connected_gene': 'LGSN', 'score': 17.16}, {'connected_gene': 'EEF1B2P5', 'score': 0.77}, {'connected_gene': 'GC06M063463', 'score': 0.39}]
chr6	GH06I063536	63536989	63538723	1.2	[{'connected_gene': 'LGSN', 'score': 17.63}, {'connected_gene': 'PHF3', 'score': 12.28}, {'connected_gene': 'GC06P063532', 'score': 0.44}, {'connected_gene': 'RPL7AP34', 'score': 0.39}, {'connected_gene': 'PTP4A1', 'score': 0.37}]
chr6	GH06I063451	63451846	63453566	0.92	[{'connected_gene': 'LGSN', 'score': 27.47}, {'connected_gene': 'PHF3', 'score': 11.15}, {'connected_gene': 'GC06M063427', 'score': 0.39}, {'connected_gene': 'GC06M063429', 'score': 0.39}, {'connected_gene': 'GC06M063428', 'score': 0.39}, {'connected_gene': 'GC06M063463', 'score': 0.39}, {'connected_gene': 'GC06M063421', 'score': 0.39}]
chr6	GH06I063319	63319973	63320032	0.5	[{'connected_gene': 'LGSN', 'score': 550.07}, {'connected_gene': 'GC06M063310', 'score': 0.44}, {'connected_gene': 'GC06M063391', 'score': 0.19}, {'connected_gene': 'GC06M063390', 'score': 0.19}, {'connected_gene': 'GC06M063389', 'score': 0.19}]
chr6	GH06I063346	63346336	63350185	1.13	[{'connected_gene': 'LGSN', 'score': 17.24}, {'connected_gene': 'ENSG00000236345', 'score': 11.37}, {'connected_gene': 'GC06M063310', 'score': 0.28}, {'connected_gene': 'GC06M063391', 'score': 0.26}, {'connected_gene': 'GC06M063390', 'score': 0.26}, {'connected_gene': 'GC06M063389', 'score': 0.26}]
chr6	GH06I063550	63550240	63550800	0.2	[{'connected_gene': 'RPL7AP34', 'score': 550.77}, {'connected_gene': 'LGSN', 'score': 9.84}, {'connected_gene': 'GC06P063558', 'score': 0.44}, {'connected_gene': 'PTP4A1', 'score': 0.31}]
chr6	GH06I063504	63504856	63505005	0.79	[{'connected_gene': 'GC06P063496', 'score': 0.44}, {'connected_gene': 'PTP4A1', 'score': 0.37}, {'connected_gene': 'LGSN', 'score': 0.21}]
chr6	GH06I063569	63569469	63576810	2.32	[{'connected_gene': 'ENSG00000266680', 'score': 550.77}, {'connected_gene': 'PTP4A1', 'score': 550.23}, {'connected_gene': 'PHF3', 'score': 11.34}, {'connected_gene': 'LGSN', 'score': 10.6}, {'connected_gene': 'ENSG00000236345', 'score': 10.34}, {'connected_gene': 'GC06M063587', 'score': 0.37}]
chr6	GH06I063441	63441389	63441874	0.74	[{'connected_gene': 'GC06M063427', 'score': 550.77}, {'connected_gene': 'GC06M063429', 'score': 550.77}, {'connected_gene': 'GC06M063428', 'score': 550.77}, {'connected_gene': 'LOC642554', 'score': 550.77}, {'connected_gene': 'GC06M063421', 'score': 550.77}, {'connected_gene': 'LGSN', 'score': 23.37}, {'connected_gene': 'GC06M063463', 'score': 0.34}]
chr6	GH06I063440	63440168	63440336	0.4	[{'connected_gene': 'GC06M063427', 'score': 550.77}, {'connected_gene': 'GC06M063429', 'score': 550.77}, {'connected_gene': 'GC06M063428', 'score': 550.77}, {'connected_gene': 'GC06M063416', 'score': 550.77}, {'connected_gene': 'LOC642554', 'score': 550.77}, {'connected_gene': 'GC06M063421', 'score': 550.77}, {'connected_gene': 'LGSN', 'score': 0.13}]
chr6	GH06I063560	63560303	63561899	0.99	[{'connected_gene': 'GC06P063560', 'score': 550.77}, {'connected_gene': 'LGSN', 'score': 0.44}, {'connected_gene': 'PTP4A1', 'score': 0.28}]
chr6	GH06I063558	63558155	63559339	0.2	[{'connected_gene': 'GC06P063558', 'score': 550.77}, {'connected_gene': 'GC06P063560', 'score': 550.77}, {'connected_gene': 'LGSN', 'score': 0.44}, {'connected_gene': 'PTP4A1', 'score': 0.28}]
chr6	GH06I063495	63495645	63497225	0.76	[{'connected_gene': 'GC06P063496', 'score': 550.77}, {'connected_gene': 'LGSN', 'score': 17.29}, {'connected_gene': 'PTP4A1', 'score': 0.31}]
chr6	GH06I063859	63859601	63860000	0.2	[{'connected_gene': 'ENSG00000236345', 'score': 10.71}, {'connected_gene': 'LGSN', 'score': 6.62}, {'connected_gene': 'GCNT1P4', 'score': 0.77}, {'connected_gene': 'GC06P063872', 'score': 0.39}]
chr6	GH06I063352	63352002	63353805	1.44	[{'connected_gene': 'ENSG00000236345', 'score': 10.9}, {'connected_gene': 'LGSN', 'score': 10.56}, {'connected_gene': 'GC06M063391', 'score': 0.28}, {'connected_gene': 'GC06M063390', 'score': 0.28}, {'connected_gene': 'GC06M063389', 'score': 0.28}, {'connected_gene': 'GC06M063310', 'score': 0.26}]
chr6	GH06I063303	63303586	63307986	0.73	[{'connected_gene': 'GC06P063304', 'score': 550.77}, {'connected_gene': 'LGSN', 'score': 6.86}, {'connected_gene': 'GC06M063310', 'score': 0.44}]
chr6	GH06I063345	63345643	63345864	0.23	[{'connected_gene': 'ENSG00000236345', 'score': 10.4}, {'connected_gene': 'GC06M063310', 'score': 0.29}, {'connected_gene': 'GC06M063391', 'score': 0.26}, {'connected_gene': 'GC06M063390', 'score': 0.26}, {'connected_gene': 'GC06M063389', 'score': 0.26}, {'connected_gene': 'LGSN', 'score': 0.07}]
chr6	GH06I063389	63389409	63392669	0.95	[{'connected_gene': 'GC06M063391', 'score': 550.77}, {'connected_gene': 'GC06M063390', 'score': 550.77}, {'connected_gene': 'GC06M063389', 'score': 550.77}, {'connected_gene': 'ENSG00000218617', 'score': 550.77}, {'connected_gene': 'LGSN', 'score': 0.1}]
chr6	GH06I063493	63493696	63493785	0.38	[{'connected_gene': 'GC06P063496', 'score': 0.77}, {'connected_gene': 'GC06P063483', 'score': 0.39}, {'connected_gene': 'LGSN', 'score': 0.19}]
chr6	GH06I063487	63487296	63487425	0.69	[{'connected_gene': 'GC06P063483', 'score': 0.77}, {'connected_gene': 'GC06P063496', 'score': 0.44}, {'connected_gene': 'LGSN', 'score': 0.18}]
chr6	GH06I063383	63383976	63384085	0.69	[{'connected_gene': 'GC06M063391', 'score': 0.44}, {'connected_gene': 'GC06M063390', 'score': 0.44}, {'connected_gene': 'GC06M063389', 'score': 0.44}, {'connected_gene': 'GC06M063310', 'score': 0.19}, {'connected_gene': 'LGSN', 'score': 0.09}]
chr6	GH06I063555	63555054	63556165	0.72	[{'connected_gene': 'GC06P063558', 'score': 0.77}, {'connected_gene': 'RPL7AP34', 'score': 0.44}, {'connected_gene': 'LGSN', 'score': 0.39}, {'connected_gene': 'PTP4A1', 'score': 0.29}]