PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000233468	[[24290453, 24290721], [24291190, 24291329], [24296945, 24297064], [24299069, 24299313]]	[[24290631, 24290721], [24291190, 24291329], [24296945, 24297064], [24299069, 24299099]]
ENST00000478050	[[24296518, 24297064], [24299069, 24299243]]	None
NM_016047	[[24290453, 24290721], [24291190, 24291329], [24296945, 24297064], [24299069, 24299314]]	[[24290631, 24290721], [24291190, 24291329], [24296945, 24297064], [24299069, 24299099]]

Promoter

Chrom	Start	End	Description
chr2	24299099	24299102	CAGE_peak_6_at_SF3B14_5end
chr2	24299109	24299127	CAGE_peak_3_at_SF3B14_5end
chr2	24299128	24299144	CAGE_peak_4_at_SF3B14_5end
chr2	24299153	24299252	CAGE_peak_1_at_SF3B14_5end
chr2	24299259	24299265	CAGE_peak_5_at_SF3B14_5end
chr2	24299294	24299299	CAGE_peak_7_at_SF3B14_5end
chr2	24299308	24299354	CAGE_peak_2_at_SF3B14_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I024101	24101459	24101651	0.24	[{'connected_gene': 'SF3B6', 'score': 11.17}, {'connected_gene': 'FAM228B', 'score': 11.17}, {'connected_gene': 'MFSD2B', 'score': 10.31}, {'connected_gene': 'GC02M024111', 'score': 0.44}, {'connected_gene': 'PIR36243', 'score': 0.44}, {'connected_gene': 'TP53I3', 'score': 0.37}, {'connected_gene': 'GC02P023754', 'score': 0.05}]
chr2	GH02I024025	24025088	24027068	0.31	[{'connected_gene': 'SF3B6', 'score': 10.93}, {'connected_gene': 'FAM228B', 'score': 10.93}, {'connected_gene': 'UBXN2A', 'score': 4.44}, {'connected_gene': 'RNU6-370P', 'score': 0.37}, {'connected_gene': 'MFSD2B', 'score': 0.37}, {'connected_gene': 'GC02P023754', 'score': 0.06}]
chr2	GH02I023548	23548257	23551204	1.1	[{'connected_gene': 'SF3B6', 'score': 4.79}, {'connected_gene': 'GC02M023539', 'score': 0.44}, {'connected_gene': 'GC02M023617', 'score': 0.2}, {'connected_gene': 'KLHL29', 'score': 0.1}]
chr2	GH02I024075	24075204	24078746	2.32	[{'connected_gene': 'FAM228B', 'score': 587.3}, {'connected_gene': 'GC02M024079', 'score': 550.77}, {'connected_gene': 'PIR43014', 'score': 550.77}, {'connected_gene': 'SF3B6', 'score': 550.77}, {'connected_gene': 'TP53I3', 'score': 34.48}, {'connected_gene': 'ATAD2B', 'score': 16.14}, {'connected_gene': 'PFN4', 'score': 13.19}, {'connected_gene': 'WDCP', 'score': 10.6}, {'connected_gene': 'ENSG00000271936', 'score': 10.05}, {'connected_gene': 'GC02P023754', 'score': 0.05}]
chr2	GH02I024048	24048981	24050800	1.89	[{'connected_gene': 'FKBP1B', 'score': 550.77}, {'connected_gene': 'WDCP', 'score': 550.77}, {'connected_gene': 'FAM228B', 'score': 46.56}, {'connected_gene': 'SF3B6', 'score': 12.16}, {'connected_gene': 'MFSD2B', 'score': 11.81}, {'connected_gene': 'TP53I3', 'score': 11.13}, {'connected_gene': 'UBXN2A', 'score': 10.72}, {'connected_gene': 'ATAD2B', 'score': 10.72}, {'connected_gene': 'PFN4', 'score': 10.09}, {'connected_gene': 'GC02M024079', 'score': 0.31}, {'connected_gene': 'PIR43014', 'score': 0.31}, {'connected_gene': 'GC02P023754', 'score': 0.06}]
chr2	GH02I023824	23824811	23824960	0.64	[{'connected_gene': 'UBXN2A', 'score': 11.09}, {'connected_gene': 'ATAD2B', 'score': 11.09}, {'connected_gene': 'SF3B6', 'score': 10.12}, {'connected_gene': 'FAM228B', 'score': 10.12}, {'connected_gene': 'MFSD2B', 'score': 9.77}, {'connected_gene': 'PFN4', 'score': 7.77}, {'connected_gene': 'PGAM1P6', 'score': 0.25}, {'connected_gene': 'GC02P023754', 'score': 0.19}]
chr2	GH02I023990	23990825	23991077	0.22	[{'connected_gene': 'UBXN2A', 'score': 11.23}, {'connected_gene': 'ATAD2B', 'score': 11.23}, {'connected_gene': 'FAM228B', 'score': 10.62}, {'connected_gene': 'SF3B6', 'score': 10.62}, {'connected_gene': 'PFN4', 'score': 7.9}, {'connected_gene': 'RN7SL610P', 'score': 0.44}, {'connected_gene': 'GC02P023944', 'score': 0.25}, {'connected_gene': 'GC02P023754', 'score': 0.07}]
chr2	GH02I023924	23924738	23928391	2.1	[{'connected_gene': 'UBXN2A', 'score': 563.65}, {'connected_gene': 'ATAD2B', 'score': 550.77}, {'connected_gene': 'FAM228B', 'score': 28.07}, {'connected_gene': 'MFSD2B', 'score': 11.29}, {'connected_gene': 'SF3B6', 'score': 10.6}, {'connected_gene': 'FKBP1B', 'score': 8.93}, {'connected_gene': 'PFN4', 'score': 8.22}, {'connected_gene': 'RPS13P4', 'score': 0.31}, {'connected_gene': 'GC02P023754', 'score': 0.09}]
chr2	GH02I023563	23563312	23565556	0.92	[{'connected_gene': 'KLHL29', 'score': 5.57}, {'connected_gene': 'SF3B6', 'score': 4.79}, {'connected_gene': 'GC02M023539', 'score': 0.34}, {'connected_gene': 'GC02M023617', 'score': 0.23}]
chr2	GH02I023900	23900111	23902861	0.99	[{'connected_gene': 'RPS13P4', 'score': 550.77}, {'connected_gene': 'UBXN2A', 'score': 22.9}, {'connected_gene': 'ATAD2B', 'score': 17.67}, {'connected_gene': 'FAM228B', 'score': 11.3}, {'connected_gene': 'SF3B6', 'score': 9.21}, {'connected_gene': 'PFN4', 'score': 7.72}, {'connected_gene': 'GC02P023754', 'score': 0.11}]
chr2	GH02I024110	24110565	24111906	0.62	[{'connected_gene': 'GC02M024111', 'score': 550.77}, {'connected_gene': 'PIR36243', 'score': 550.77}, {'connected_gene': 'FAM228B', 'score': 50.8}, {'connected_gene': 'PFN4', 'score': 14.38}, {'connected_gene': 'TP53I3', 'score': 11.72}, {'connected_gene': 'SF3B6', 'score': 11.14}, {'connected_gene': 'MFSD2B', 'score': 10.43}, {'connected_gene': 'UBXN2A', 'score': 9.64}, {'connected_gene': 'ATAD2B', 'score': 9.64}, {'connected_gene': 'FAM228A', 'score': 5.9}, {'connected_gene': 'GC02P023754', 'score': 0.05}]