PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000341756	[[166778406, 166778941], [166779461, 166779594], [166780282, 166780379], [166780451, 166780455], [166796293, 166796486]]	[[166778916, 166778941], [166779461, 166779594], [166780282, 166780379], [166780451, 166780455], [166796293, 166796364]]
ENST00000360961	[[166778406, 166778941], [166779461, 166779594], [166780282, 166780379], [166783705, 166783709], [166796293, 166796486]]	[[166778916, 166778941], [166779461, 166779594], [166780282, 166780379], [166783705, 166783709], [166796293, 166796364]]
ENST00000487218	[[166778561, 166778941], [166779461, 166779594], [166780282, 166780379], [166780456, 166780672], [166783705, 166783709], [166796293, 166796381]]	None
ENST00000366868	[[166778717, 166778941], [166779461, 166779594], [166780282, 166780379], [166783705, 166783823]]	None
ENST00000475708	[[166778819, 166778941], [166779461, 166779594], [166780282, 166780379], [166782220, 166782449], [166783705, 166783709], [166796293, 166796359]]	None
NR_073093	[[166778406, 166778941], [166779461, 166779594], [166780282, 166780379], [166782220, 166782449], [166783705, 166783709], [166796293, 166796501]]	None
NM_001270879	[[166778406, 166778941], [166779461, 166779594], [166780282, 166780379], [166780456, 166780672], [166783705, 166783709], [166796293, 166796501]]	[[166778916, 166778941], [166779461, 166779594], [166780282, 166780325]]
NM_016098	[[166778406, 166778941], [166779461, 166779594], [166780282, 166780379], [166783705, 166783709], [166796293, 166796501]]	[[166778916, 166778941], [166779461, 166779594], [166780282, 166780379], [166783705, 166783709], [166796293, 166796364]]

Promoter

Chrom	Start	End	Description
chr6	166780340	166780356	CAGE_peak_5_at_BRP44L_5end
chr6	166796384	166796395	CAGE_peak_3_at_BRP44L_5end
chr6	166796415	166796439	CAGE_peak_1_at_BRP44L_5end
chr6	166796461	166796496	CAGE_peak_2_at_BRP44L_5end
chr6	166796498	166796503	CAGE_peak_4_at_BRP44L_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I166412	166412741	166414004	0.52	[{'connected_gene': 'MPC1', 'score': 11.26}, {'connected_gene': 'PRR18', 'score': 10.69}, {'connected_gene': 'PIR48862', 'score': 0.77}, {'connected_gene': 'PIR46600', 'score': 0.44}, {'connected_gene': 'RPS6KA2', 'score': 0.04}]
chr6	GH06I166414	166414435	166415951	0.38	[{'connected_gene': 'MPC1', 'score': 11.26}, {'connected_gene': 'PRR18', 'score': 10.68}, {'connected_gene': 'PIR48862', 'score': 0.77}, {'connected_gene': 'PIR46600', 'score': 0.44}, {'connected_gene': 'RPS6KA2', 'score': 0.04}]
chr6	GH06I166416	166416710	166420870	0.87	[{'connected_gene': 'MPC1', 'score': 11.24}, {'connected_gene': 'PRR18', 'score': 10.93}, {'connected_gene': 'SFT2D1', 'score': 10.64}, {'connected_gene': 'HNRNPA1P49', 'score': 5.53}, {'connected_gene': 'PIR46600', 'score': 0.77}, {'connected_gene': 'PIR48862', 'score': 0.44}, {'connected_gene': 'RPS6KA2', 'score': 0.04}]
chr6	GH06I166351	166351801	166352543	1.07	[{'connected_gene': 'MPC1', 'score': 11.43}, {'connected_gene': 'LOC100289495', 'score': 0.44}, {'connected_gene': 'GC06M166360', 'score': 0.44}]
chr6	GH06I166363	166363543	166367213	0.72	[{'connected_gene': 'PRR18', 'score': 24.73}, {'connected_gene': 'SFT2D1', 'score': 12.6}, {'connected_gene': 'MPC1', 'score': 11.29}, {'connected_gene': 'GC06M166360', 'score': 0.77}]
chr6	GH06I166341	166340553	166340702	0.2	[{'connected_gene': 'SFT2D1', 'score': 550.77}, {'connected_gene': 'MPC1', 'score': 11.88}, {'connected_gene': 'PRR18', 'score': 11.21}, {'connected_gene': 'HNRNPA1P49', 'score': 0.44}]
chr6	GH06I166314	166314989	166316214	0.2	[{'connected_gene': 'SFT2D1', 'score': 21.77}, {'connected_gene': 'MPC1', 'score': 11.65}, {'connected_gene': 'PRR18', 'score': 0.44}, {'connected_gene': 'HNRNPA1P49', 'score': 0.37}]
chr6	GH06I166252	166252801	166254600	0.66	[{'connected_gene': 'SFT2D1', 'score': 8.43}, {'connected_gene': 'MPC1', 'score': 5.23}, {'connected_gene': 'GNG5P1', 'score': 0.39}, {'connected_gene': 'LOC101929297', 'score': 0.37}, {'connected_gene': 'ENSG00000280850', 'score': 0.34}]
chr6	GH06I166317	166317565	166319643	0.95	[{'connected_gene': 'SFT2D1', 'score': 30.42}, {'connected_gene': 'MPC1', 'score': 11.66}, {'connected_gene': 'HNRNPA1P49', 'score': 6.7}, {'connected_gene': 'PRR18', 'score': 0.39}]
chr6	GH06I166257	166257797	166260599	1.23	[{'connected_gene': 'SFT2D1', 'score': 17.77}, {'connected_gene': 'PRR18', 'score': 11.33}, {'connected_gene': 'MPC1', 'score': 8.82}, {'connected_gene': 'GNG5P1', 'score': 0.37}, {'connected_gene': 'ENSG00000280850', 'score': 0.37}]
chr6	GH06I166340	166340971	166343969	2.32	[{'connected_gene': 'SFT2D1', 'score': 574.78}, {'connected_gene': 'LOC100289495', 'score': 550.77}, {'connected_gene': 'MPC1', 'score': 11.88}, {'connected_gene': 'PRR18', 'score': 11.21}, {'connected_gene': 'HNRNPA1P49', 'score': 5.94}]
chr6	GH06I166332	166332850	166334874	1.12	[{'connected_gene': 'HNRNPA1P49', 'score': 556.34}, {'connected_gene': 'MPC1', 'score': 12.17}, {'connected_gene': 'PRR18', 'score': 11.96}, {'connected_gene': 'SFT2D1', 'score': 8.57}]
chr6	GH06I166410	166410812	166412452	0.58	[{'connected_gene': 'PIR48862', 'score': 550.77}, {'connected_gene': 'MPC1', 'score': 11.9}, {'connected_gene': 'PRR18', 'score': 11.08}, {'connected_gene': 'LOC105378120', 'score': 9.71}, {'connected_gene': 'FGFR1OP', 'score': 9.71}, {'connected_gene': 'PIR46600', 'score': 0.39}, {'connected_gene': 'RPS6KA2', 'score': 0.04}]
chr6	GH06I166381	166381037	166384534	2.08	[{'connected_gene': 'ENSG00000261420', 'score': 550.77}, {'connected_gene': 'GC06P166385', 'score': 550.77}, {'connected_gene': 'MPC1', 'score': 550.77}, {'connected_gene': 'HNRNPA1P49', 'score': 14.1}, {'connected_gene': 'PRR18', 'score': 12.23}, {'connected_gene': 'SFT2D1', 'score': 11.81}, {'connected_gene': 'GC06M166360', 'score': 0.34}]
chr6	GH06I166360	166360204	166361693	1.16	[{'connected_gene': 'GC06M166360', 'score': 550.77}, {'connected_gene': 'PRR18', 'score': 25.05}, {'connected_gene': 'MPC1', 'score': 12.03}, {'connected_gene': 'LOC100289495', 'score': 0.37}]