PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000300571	[[19868615, 19871866], [19873158, 19873295], [19883137, 19884168], [19896048, 19896239]]	[[19871821, 19871866], [19873158, 19873295]]
ENST00000569102	[[19868620, 19869065], [19869322, 19869368]]	None
ENST00000535671	[[19869819, 19869867], [19873158, 19873295], [19883137, 19884167]]	[[19869819, 19869867], [19873158, 19873295], [19883137, 19884167]]
ENST00000562348	[[19870292, 19871866], [19873158, 19873662]]	None
ENST00000569479	[[19870292, 19871866], [19873158, 19873295], [19883137, 19884168], [19897247, 19897489]]	[[19871821, 19871866], [19873158, 19873295]]
ENST00000537135	[[19871729, 19871866], [19873158, 19873295], [19883137, 19884168], [19896524, 19896832]]	[[19871821, 19871866], [19873158, 19873295], [19883137, 19884168], [19896524, 19896601]]
ENST00000569847	[[19871729, 19871866], [19873158, 19873295], [19883137, 19884168], [19896524, 19897049]]	[[19871821, 19871866], [19873158, 19873295]]
ENST00000566822	[[19883634, 19884168], [19893453, 19893682]]	None
ENST00000562469	[[19883722, 19884168], [19892291, 19892315], [19893453, 19893623], [19896048, 19896226]]	None
ENST00000568214	[[19883897, 19884168], [19886053, 19886120], [19897247, 19897477]]	None
ENST00000570142	[[19883908, 19884168], [19893453, 19893623], [19896048, 19896186]]	None
ENST00000564449	[[19884090, 19884168], [19893453, 19893623], [19896524, 19896847]]	None
NM_016235	[[19870292, 19871866], [19873158, 19873295], [19883137, 19884168], [19896048, 19896233]]	[[19871821, 19871866], [19873158, 19873295]]
NM_001304771	[[19870292, 19871866], [19873158, 19873295], [19883137, 19884168], [19896524, 19896956]]	[[19871821, 19871866], [19873158, 19873295], [19883137, 19884168], [19896524, 19896916]]

Promoter

Chrom	Start	End	Description
chr16	19873226	19873239	CAGE_peak_3_at_GPRC5B_5end
chr16	19873242	19873268	CAGE_peak_6_at_GPRC5B_5end
chr16	19873304	19873334	CAGE_peak_5_at_GPRC5B_5end
chr16	19896150	19896205	CAGE_peak_1_at_GPRC5B_5end
chr16	19896220	19896229	CAGE_peak_2_at_GPRC5B_5end
chr16	19896782	19896816	CAGE_peak_4_at_GPRC5B_5end
chr16	19896843	19896858	CAGE_peak_8_at_GPRC5B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I019878	19878885	19880138	0.97	[{'connected_gene': 'REXO5', 'score': 10.84}, {'connected_gene': 'C16orf62', 'score': 10.84}, {'connected_gene': 'THUMPD1', 'score': 10.21}, {'connected_gene': 'KNOP1', 'score': 7.72}, {'connected_gene': 'GPRC5B', 'score': 0.44}, {'connected_gene': 'LARP7P2', 'score': 0.22}, {'connected_gene': 'GC16M019876', 'score': 0.1}]
chr16	GH16I019908	19907859	19908008	0.66	[{'connected_gene': 'C16orf62', 'score': 10.49}, {'connected_gene': 'LOC105371116', 'score': 0.37}, {'connected_gene': 'GPRC5B', 'score': 0.34}, {'connected_gene': 'GC16M019876', 'score': 0.11}]
chr16	GH16I019597	19597192	19598457	0.38	[{'connected_gene': 'GPRC5B', 'score': 5.95}, {'connected_gene': 'CCP110', 'score': 5.51}, {'connected_gene': 'C16orf62', 'score': 0.26}, {'connected_gene': 'GC16M019688', 'score': 0.16}, {'connected_gene': 'GC16M019687', 'score': 0.16}]
chr16	GH16I019881	19881695	19885648	2.25	[{'connected_gene': 'GPRC5B', 'score': 566.46}, {'connected_gene': 'THUMPD1', 'score': 16.92}, {'connected_gene': 'C16orf62', 'score': 10.83}, {'connected_gene': 'KNOP1', 'score': 8.75}, {'connected_gene': 'CCP110', 'score': 7.06}, {'connected_gene': 'LARP7P2', 'score': 0.21}, {'connected_gene': 'GC16M019876', 'score': 0.09}]
chr16	GH16I019594	19594800	19596273	0.96	[{'connected_gene': 'GPRC5B', 'score': 5.7}, {'connected_gene': 'KNOP1', 'score': 4.8}, {'connected_gene': 'C16orf62', 'score': 0.26}, {'connected_gene': 'GC16M019688', 'score': 0.16}, {'connected_gene': 'GC16M019687', 'score': 0.16}]
chr16	GH16I019606	19606794	19608755	0.2	[{'connected_gene': 'GPRC5B', 'score': 17.75}, {'connected_gene': 'IQCK', 'score': 10.54}, {'connected_gene': 'KNOP1', 'score': 10.53}, {'connected_gene': 'ENSG00000259925', 'score': 5.84}, {'connected_gene': 'CCP110', 'score': 5.4}, {'connected_gene': 'C16orf62', 'score': 0.23}, {'connected_gene': 'GC16M019688', 'score': 0.18}, {'connected_gene': 'GC16M019687', 'score': 0.18}]
chr16	GH16I019886	19886359	19886548	1.16	[{'connected_gene': 'GPRC5B', 'score': 550.77}, {'connected_gene': 'LOC105371116', 'score': 0.28}, {'connected_gene': 'GC16M019876', 'score': 0.09}]
chr16	GH16I019880	19880409	19881491	0.38	[{'connected_gene': 'KNOP1', 'score': 26.63}, {'connected_gene': 'C16orf62', 'score': 10.83}, {'connected_gene': 'GPRC5B', 'score': 0.44}, {'connected_gene': 'LARP7P2', 'score': 0.21}, {'connected_gene': 'GC16M019876', 'score': 0.1}]
chr16	GH16I019876	19876145	19877128	0.51	[{'connected_gene': 'KNOP1', 'score': 20.0}, {'connected_gene': 'C16orf62', 'score': 11.3}, {'connected_gene': 'IQCK', 'score': 11.21}, {'connected_gene': 'ACSM3', 'score': 4.46}, {'connected_gene': 'GPRC5B', 'score': 0.44}, {'connected_gene': 'LARP7P2', 'score': 0.22}, {'connected_gene': 'GC16M019876', 'score': 0.09}]
chr16	GH16I019866	19866479	19875762	0.46	[{'connected_gene': 'KNOP1', 'score': 38.77}, {'connected_gene': 'C16orf62', 'score': 11.31}, {'connected_gene': 'IQCK', 'score': 11.22}, {'connected_gene': 'RNU4-46P', 'score': 9.96}, {'connected_gene': 'GPRC5B', 'score': 0.37}, {'connected_gene': 'LARP7P2', 'score': 0.23}]
chr16	GH16I019907	19907559	19907728	0.83	[{'connected_gene': 'KNOP1', 'score': 21.33}, {'connected_gene': 'C16orf62', 'score': 10.49}, {'connected_gene': 'LOC105371116', 'score': 0.37}, {'connected_gene': 'GPRC5B', 'score': 0.34}, {'connected_gene': 'GC16M019876', 'score': 0.1}]
chr16	GH16I019850	19850010	19852646	0.46	[{'connected_gene': 'KNOP1', 'score': 7.02}, {'connected_gene': 'ACSM5', 'score': 4.83}, {'connected_gene': 'LARP7P2', 'score': 0.29}, {'connected_gene': 'GPRC5B', 'score': 0.29}, {'connected_gene': 'IQCK', 'score': 0.12}]
chr16	GH16I019598	19598810	19599542	0.31	[{'connected_gene': 'KNOP1', 'score': 6.3}, {'connected_gene': 'GPRC5B', 'score': 5.95}, {'connected_gene': 'CCP110', 'score': 5.01}, {'connected_gene': 'C16orf62', 'score': 0.26}, {'connected_gene': 'GC16M019688', 'score': 0.17}, {'connected_gene': 'GC16M019687', 'score': 0.17}]
chr16	GH16I019757	19757859	19758645	1.15	[{'connected_gene': 'KNOP1', 'score': 34.67}, {'connected_gene': 'GPRC5B', 'score': 10.1}, {'connected_gene': 'CCP110', 'score': 5.81}, {'connected_gene': 'IQCK', 'score': 1.45}, {'connected_gene': 'LOC105371115', 'score': 0.44}]
chr16	GH16I019855	19855474	19857401	0.43	[{'connected_gene': 'KNOP1', 'score': 25.65}, {'connected_gene': 'GPRC5B', 'score': 12.4}, {'connected_gene': 'C16orf62', 'score': 11.02}, {'connected_gene': 'ACSM5', 'score': 4.83}, {'connected_gene': 'LARP7P2', 'score': 0.28}, {'connected_gene': 'IQCK', 'score': 0.12}]
chr16	GH16I019859	19859185	19862892	0.97	[{'connected_gene': 'KNOP1', 'score': 28.98}, {'connected_gene': 'GPRC5B', 'score': 12.4}, {'connected_gene': 'C16orf62', 'score': 11.02}, {'connected_gene': 'ACSM5', 'score': 4.57}, {'connected_gene': 'LARP7P2', 'score': 0.26}]
chr16	GH16I019857	19857724	19859081	0.56	[{'connected_gene': 'KNOP1', 'score': 24.76}, {'connected_gene': 'GPRC5B', 'score': 12.4}, {'connected_gene': 'C16orf62', 'score': 11.02}, {'connected_gene': 'LARP7P2', 'score': 0.28}, {'connected_gene': 'IQCK', 'score': 0.11}]
chr16	GH16I019899	19899439	19899608	0.59	[{'connected_gene': 'KNOP1', 'score': 16.43}, {'connected_gene': 'GPRC5B', 'score': 0.39}, {'connected_gene': 'LOC105371116', 'score': 0.34}, {'connected_gene': 'GC16M019876', 'score': 0.1}]
chr16	GH16I019863	19863620	19866300	0.2	[{'connected_gene': 'KNOP1', 'score': 39.15}, {'connected_gene': 'IQCK', 'score': 11.16}, {'connected_gene': 'C16orf62', 'score': 10.62}, {'connected_gene': 'RNU4-46P', 'score': 9.96}, {'connected_gene': 'GPRC5B', 'score': 0.34}, {'connected_gene': 'LARP7P2', 'score': 0.25}]
chr16	GH16I019829	19829722	19832627	0.94	[{'connected_gene': 'KNOP1', 'score': 38.25}, {'connected_gene': 'IQCK', 'score': 10.61}, {'connected_gene': 'LARP7P2', 'score': 0.39}, {'connected_gene': 'GPRC5B', 'score': 0.23}]
chr16	GH16I019836	19836158	19836423	0.85	[{'connected_gene': 'KNOP1', 'score': 16.35}, {'connected_gene': 'LARP7P2', 'score': 0.37}, {'connected_gene': 'GPRC5B', 'score': 0.25}, {'connected_gene': 'IQCK', 'score': 0.13}]
chr16	GH16I019833	19833217	19834253	0.31	[{'connected_gene': 'KNOP1', 'score': 27.73}, {'connected_gene': 'LARP7P2', 'score': 0.39}, {'connected_gene': 'GPRC5B', 'score': 0.23}, {'connected_gene': 'IQCK', 'score': 0.13}]
chr16	GH16I019840	19840424	19846631	1.23	[{'connected_gene': 'KNOP1', 'score': 25.86}, {'connected_gene': 'LARP7P2', 'score': 0.34}, {'connected_gene': 'GPRC5B', 'score': 0.26}, {'connected_gene': 'IQCK', 'score': 0.13}]
chr16	GH16I019852	19852906	19853624	0.38	[{'connected_gene': 'KNOP1', 'score': 27.87}, {'connected_gene': 'LARP7P2', 'score': 0.29}, {'connected_gene': 'GPRC5B', 'score': 0.29}, {'connected_gene': 'IQCK', 'score': 0.12}]
chr16	GH16I020068	20068234	20068413	0.22	[{'connected_gene': 'IQCK', 'score': 1.87}, {'connected_gene': 'GPRC5B', 'score': 1.36}, {'connected_gene': 'GPR139', 'score': 0.44}, {'connected_gene': 'GC16M019876', 'score': 0.39}]
chr16	GH16I019853	19853831	19854862	0.72	[{'connected_gene': 'LARP7P2', 'score': 0.29}, {'connected_gene': 'GPRC5B', 'score': 0.29}, {'connected_gene': 'IQCK', 'score': 0.12}]
chr16	GH16I019837	19837246	19838753	0.79	[{'connected_gene': 'LARP7P2', 'score': 0.37}, {'connected_gene': 'GPRC5B', 'score': 0.25}, {'connected_gene': 'IQCK', 'score': 0.13}]
chr16	GH16I019912	19912919	19913048	0.64	[{'connected_gene': 'LOC105371116', 'score': 0.39}, {'connected_gene': 'GPRC5B', 'score': 0.31}, {'connected_gene': 'GC16M019876', 'score': 0.11}]