PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000480740	[[150320661, 150320791], [150340171, 150340282], [150340829, 150340956], [150342598, 150342686], [150344796, 150344950], [150345445, 150345618]]	[[150340208, 150340282], [150340829, 150340956], [150342598, 150342686], [150344796, 150344921]]
ENST00000471696	[[150321074, 150321286], [150340171, 150340282], [150340829, 150340956], [150342598, 150342686], [150344796, 150344950], [150345445, 150348222]]	[[150321149, 150321286], [150340171, 150340282], [150340829, 150340956], [150342598, 150342686], [150344796, 150344921]]
ENST00000477889	[[150321077, 150321286], [150336495, 150336715], [150340171, 150340282], [150340829, 150340956], [150342598, 150342686], [150344796, 150344950], [150345445, 150345480]]	[[150340208, 150340282], [150340829, 150340956], [150342598, 150342686], [150344796, 150344921]]
ENST00000492132	[[150321114, 150321286], [150336495, 150336590], [150340171, 150340282], [150340829, 150340956], [150342598, 150342686], [150344796, 150344950], [150345445, 150345517]]	[[150321149, 150321286], [150336495, 150336496]]
ENST00000485923	[[150321122, 150321473], [150340171, 150340282], [150340829, 150340956], [150342598, 150342686], [150344796, 150344950], [150345445, 150345692]]	[[150340208, 150340282], [150340829, 150340956], [150342598, 150342686], [150344796, 150344921]]
ENST00000466234	[[150344697, 150344950], [150345445, 150345777]]	None
NM_016275	[[150321065, 150321286], [150340171, 150340282], [150340829, 150340956], [150342598, 150342686], [150344796, 150344950], [150345445, 150348234]]	[[150321149, 150321286], [150340171, 150340282], [150340829, 150340956], [150342598, 150342686], [150344796, 150344921]]

Promoter

Chrom	Start	End	Description
chr3	150340187	150340227	CAGE_peak_1_at_SELT_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I150582	150582264	150584661	0.57	[{'connected_gene': 'EIF2A', 'score': 52.0}, {'connected_gene': 'SELENOT', 'score': 4.53}, {'connected_gene': 'SERP1', 'score': 0.37}]
chr3	GH03I150538	150538375	150539693	0.54	[{'connected_gene': 'EIF2A', 'score': 6.14}, {'connected_gene': 'SELENOT', 'score': 5.07}, {'connected_gene': 'GC03M150475', 'score': 0.21}]
chr3	GH03I150543	150543913	150548628	2.28	[{'connected_gene': 'EIF2A', 'score': 596.96}, {'connected_gene': 'SERP1', 'score': 557.42}, {'connected_gene': 'COMMD2', 'score': 9.68}, {'connected_gene': 'SELENOT', 'score': 5.09}, {'connected_gene': 'GC03M150475', 'score': 0.19}]
chr3	GH03I150607	150607388	150608135	0.67	[{'connected_gene': 'EIF2A', 'score': 28.47}, {'connected_gene': 'ERICH6', 'score': 10.69}, {'connected_gene': 'ERICH6-AS1', 'score': 10.69}, {'connected_gene': 'SELENOT', 'score': 6.02}, {'connected_gene': 'SERP1', 'score': 0.77}, {'connected_gene': 'GC03M150612', 'score': 0.77}]
chr3	GH03I150759	150759014	150766484	2.55	[{'connected_gene': 'SIAH2', 'score': 559.15}, {'connected_gene': 'SIAH2-AS1', 'score': 550.77}, {'connected_gene': 'TSC22D2', 'score': 4.3}, {'connected_gene': 'SERP1', 'score': 1.86}, {'connected_gene': 'GPR171', 'score': 1.54}, {'connected_gene': 'SELENOT', 'score': 1.2}, {'connected_gene': 'LOC105374155', 'score': 0.77}]
chr3	GH03I150541	150541000	150541600	0.2	[{'connected_gene': 'SELENOT', 'score': 5.08}, {'connected_gene': 'EIF2A', 'score': 0.44}, {'connected_gene': 'GC03M150475', 'score': 0.2}]
chr3	GH03I150598	150598167	150607003	2.51	[{'connected_gene': 'SELENOT', 'score': 556.03}, {'connected_gene': 'SERP1', 'score': 550.77}, {'connected_gene': 'EIF2A', 'score': 52.33}, {'connected_gene': 'COMMD2', 'score': 11.96}, {'connected_gene': 'TSC22D2', 'score': 11.26}, {'connected_gene': 'ERICH6', 'score': 10.68}, {'connected_gene': 'ERICH6-AS1', 'score': 10.68}]
chr3	GH03I150634	150634938	150637027	0.74	[{'connected_gene': 'SERP1', 'score': 11.67}, {'connected_gene': 'SELENOT', 'score': 11.67}, {'connected_gene': 'ERICH6', 'score': 11.34}, {'connected_gene': 'ERICH6-AS1', 'score': 11.34}, {'connected_gene': 'EIF2A', 'score': 10.77}, {'connected_gene': 'GC03P150627', 'score': 0.44}]
chr3	GH03I150631	150631199	150631219	0.23	[{'connected_gene': 'SERP1', 'score': 12.01}, {'connected_gene': 'SELENOT', 'score': 12.01}, {'connected_gene': 'ERICH6', 'score': 11.4}, {'connected_gene': 'ERICH6-AS1', 'score': 11.4}, {'connected_gene': 'CLRN1', 'score': 4.36}, {'connected_gene': 'GC03P150627', 'score': 0.77}]
chr3	GH03I150662	150662601	150662800	0.52	[{'connected_gene': 'ERICH6', 'score': 11.97}, {'connected_gene': 'ERICH6-AS1', 'score': 11.97}, {'connected_gene': 'SERP1', 'score': 11.33}, {'connected_gene': 'SELENOT', 'score': 11.33}, {'connected_gene': 'ENSG00000243273', 'score': 10.12}, {'connected_gene': 'MINDY4B', 'score': 10.12}, {'connected_gene': 'GC03P150627', 'score': 0.28}]
chr3	GH03I150723	150723349	150724607	0.52	[{'connected_gene': 'ERICH6-AS1', 'score': 21.72}, {'connected_gene': 'SIAH2', 'score': 11.9}, {'connected_gene': 'SIAH2-AS1', 'score': 11.9}, {'connected_gene': 'ENSG00000243273', 'score': 10.82}, {'connected_gene': 'MINDY4B', 'score': 10.8}, {'connected_gene': 'SELENOT', 'score': 10.72}, {'connected_gene': 'SERP1', 'score': 10.72}, {'connected_gene': 'SNRPCP3', 'score': 0.77}, {'connected_gene': 'LOC101928105', 'score': 0.37}]