PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr4	152608318	152608329	CAGE_peak_10_at_PET112_5end
chr4	152608451	152608473	CAGE_peak_7_at_PET112_5end
chr4	152637329	152637339	CAGE_peak_8_at_PET112_5end
chr4	152637367	152637382	CAGE_peak_2_at_PET112_5end
chr4	152637386	152637403	CAGE_peak_3_at_PET112_5end
chr4	152638396	152638419	CAGE_peak_6_at_PET112_5end
chr4	152682129	152682170	CAGE_peak_1_at_PET112_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I151347	151347124	151348471	0.2	[{'connected_gene': 'FAM160A1', 'score': 12.92}, {'connected_gene': 'ENSG00000251603', 'score': 11.82}, {'connected_gene': 'GATB', 'score': 6.04}, {'connected_gene': 'ENSG00000270265', 'score': 0.44}, {'connected_gene': 'SH3D19', 'score': 0.34}]
chr4	GH04I151573	151573628	151574339	0.31	[{'connected_gene': 'GATB', 'score': 14.54}, {'connected_gene': 'FAM160A1', 'score': 5.46}, {'connected_gene': 'RN7SKP35', 'score': 0.77}, {'connected_gene': 'GC04M151467', 'score': 0.39}]
chr4	GH04I151658	151658920	151660133	0.51	[{'connected_gene': 'GATB', 'score': 13.76}, {'connected_gene': 'ENSG00000251455', 'score': 7.92}, {'connected_gene': 'PIR52940', 'score': 0.44}, {'connected_gene': 'GC04P151637', 'score': 0.34}, {'connected_gene': 'GC04M151651', 'score': 0.2}, {'connected_gene': 'FAM160A1', 'score': 0.07}]
chr4	GH04I151539	151539840	151542667	1.3	[{'connected_gene': 'GATB', 'score': 12.42}, {'connected_gene': 'GC04M151467', 'score': 0.37}, {'connected_gene': 'FAM160A1', 'score': 0.12}]
chr4	GH04I151760	151760069	151761725	2.03	[{'connected_gene': 'GATB', 'score': 570.41}, {'connected_gene': 'RPS3A', 'score': 13.14}, {'connected_gene': 'MIR4453HG', 'score': 10.43}, {'connected_gene': 'GC04P151731', 'score': 0.31}]
chr4	GH04I151583	151583847	151584962	0.31	[{'connected_gene': 'GATB', 'score': 14.28}, {'connected_gene': 'RN7SKP35', 'score': 0.44}, {'connected_gene': 'GC04M151611', 'score': 0.25}, {'connected_gene': 'FAM160A1', 'score': 0.1}]
chr4	GH04I151563	151563944	151564980	0.2	[{'connected_gene': 'GATB', 'score': 14.27}, {'connected_gene': 'GC04M151467', 'score': 0.77}, {'connected_gene': 'RN7SKP35', 'score': 0.39}, {'connected_gene': 'FAM160A1', 'score': 0.1}]
chr4	GH04I151810	151810639	151812198	0.38	[{'connected_gene': 'GATB', 'score': 7.14}, {'connected_gene': 'ENSG00000249184', 'score': 0.39}, {'connected_gene': 'ENSG00000249708', 'score': 0.18}]
chr4	GH04I151822	151822177	151823152	0.2	[{'connected_gene': 'GATB', 'score': 6.11}, {'connected_gene': 'ENSG00000249184', 'score': 0.34}, {'connected_gene': 'ENSG00000249708', 'score': 0.2}]
chr4	GH04I151685	151685109	151685893	0.2	[{'connected_gene': 'GATB', 'score': 19.85}, {'connected_gene': 'ENSG00000251455', 'score': 0.39}, {'connected_gene': 'GC04M151651', 'score': 0.28}]
chr4	GH04I151809	151809864	151809996	0.22	[{'connected_gene': 'GATB', 'score': 9.14}, {'connected_gene': 'ENSG00000249184', 'score': 0.39}, {'connected_gene': 'ENSG00000249708', 'score': 0.18}]
chr4	GH04I151806	151806014	151808458	1.01	[{'connected_gene': 'GATB', 'score': 16.51}, {'connected_gene': 'ENSG00000249184', 'score': 0.44}, {'connected_gene': 'ENSG00000249708', 'score': 0.18}]
chr4	GH04I151689	151689131	151693836	0.83	[{'connected_gene': 'GATB', 'score': 20.44}, {'connected_gene': 'ENSG00000251455', 'score': 7.86}, {'connected_gene': 'GC04M151651', 'score': 0.29}]
chr4	GH04I151742	151742485	151746526	1.12	[{'connected_gene': 'GATB', 'score': 14.82}, {'connected_gene': 'GC04P151731', 'score': 0.39}]
chr4	GH04I151752	151752762	151753984	0.31	[{'connected_gene': 'GATB', 'score': 0.44}, {'connected_gene': 'GC04P151731', 'score': 0.34}]
chr4	GH04I151312	151312555	151317785	0.8	[{'connected_gene': 'GC04P151316', 'score': 550.77}, {'connected_gene': 'FAM160A1', 'score': 13.47}, {'connected_gene': 'PRSS48', 'score': 11.43}, {'connected_gene': 'ENSG00000250350', 'score': 11.43}, {'connected_gene': 'GATB', 'score': 5.87}, {'connected_gene': 'ENSG00000251455', 'score': 4.94}, {'connected_gene': 'SH3D19', 'score': 0.39}, {'connected_gene': 'RNU6-1282P', 'score': 0.39}]
chr4	GH04I151665	151665020	151669941	0.54	[{'connected_gene': 'ENSG00000251603', 'score': 550.77}, {'connected_gene': 'PIR52940', 'score': 550.77}, {'connected_gene': 'GATB', 'score': 20.15}, {'connected_gene': 'ENSG00000251455', 'score': 8.18}, {'connected_gene': 'ENSG00000278978', 'score': 0.77}, {'connected_gene': 'GC04M151651', 'score': 0.22}, {'connected_gene': 'FAM160A1', 'score': 0.07}]
chr4	GH04I151675	151674309	151676989	0.78	[{'connected_gene': 'ENSG00000251455', 'score': 556.96}, {'connected_gene': 'GATB', 'score': 14.04}, {'connected_gene': 'GC04M151651', 'score': 0.25}]
chr4	GH04I151674	151674001	151674200	0.4	[{'connected_gene': 'ENSG00000251455', 'score': 550.77}, {'connected_gene': 'ENSG00000278978', 'score': 0.77}, {'connected_gene': 'GC04M151651', 'score': 0.23}, {'connected_gene': 'GATB', 'score': 0.17}]
chr4	GH04I151727	151727210	151728423	0.2	[{'connected_gene': 'GC04M151651', 'score': 0.77}, {'connected_gene': 'GC04P151731', 'score': 0.77}, {'connected_gene': 'GATB', 'score': 0.29}]
chr4	GH04I151671	151671533	151671669	0.87	[{'connected_gene': 'ENSG00000278978', 'score': 550.77}, {'connected_gene': 'ENSG00000251455', 'score': 0.77}, {'connected_gene': 'GC04M151651', 'score': 0.23}, {'connected_gene': 'GATB', 'score': 0.17}]
chr4	GH04I151694	151694864	151696001	0.31	[{'connected_gene': 'ENSG00000251455', 'score': 6.78}, {'connected_gene': 'GC04M151651', 'score': 0.31}, {'connected_gene': 'GATB', 'score': 0.2}]
chr4	GH04I151687	151687349	151687498	0.4	[{'connected_gene': 'ENSG00000251455', 'score': 0.39}, {'connected_gene': 'GC04M151651', 'score': 0.28}, {'connected_gene': 'GATB', 'score': 0.19}]
chr4	GH04I151728	151728769	151730968	0.81	[{'connected_gene': 'GC04P151731', 'score': 550.77}, {'connected_gene': 'GATB', 'score': 13.55}, {'connected_gene': 'GC04M151651', 'score': 0.77}]
chr4	GH04I151672	151671889	151672038	1.02	[{'connected_gene': 'ENSG00000278978', 'score': 0.77}, {'connected_gene': 'ENSG00000251455', 'score': 0.77}, {'connected_gene': 'GC04M151651', 'score': 0.23}, {'connected_gene': 'GATB', 'score': 0.17}]
chr4	GH04I151796	151796730	151800915	0.69	[{'connected_gene': 'ENSG00000249184', 'score': 550.77}, {'connected_gene': 'GATB', 'score': 13.06}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000263985	[[152591655, 152592454], [152593913, 152594048], [152600964, 152601043], [152609781, 152609915], [152622480, 152622670], [152625002, 152625047], [152626336, 152626421], [152629139, 152629253], [152637160, 152637283], [152638027, 152638226], [152640576, 152640690], [152679923, 152680074], [152681958, 152682175]]	[[152592325, 152592454], [152593913, 152594048], [152600964, 152601043], [152609781, 152609915], [152622480, 152622670], [152625002, 152625047], [152626336, 152626421], [152629139, 152629253], [152637160, 152637283], [152638027, 152638226], [152640576, 152640690], [152679923, 152680074], [152681958, 152682134]]
ENST00000510396	[[152591989, 152592454], [152593760, 152597040]]	None
ENST00000515564	[[152592000, 152592454], [152593913, 152594048], [152600964, 152601043], [152609781, 152609915], [152622480, 152622608], [152625002, 152625047], [152626336, 152626421], [152629139, 152629253], [152637160, 152637283], [152638027, 152638226], [152640576, 152645632]]	None
ENST00000515812	[[152592000, 152592454], [152593913, 152594048], [152600964, 152601043], [152609781, 152609915], [152622480, 152622670], [152625002, 152625047], [152626336, 152626421], [152629139, 152629253], [152638027, 152638226], [152640576, 152640690], [152679923, 152680074], [152681958, 152682151]]	[[152592325, 152592454], [152593913, 152594048], [152600964, 152601043], [152609781, 152609915], [152622480, 152622670], [152625002, 152625047], [152626336, 152626421], [152629139, 152629253], [152638027, 152638226], [152640576, 152640690], [152679923, 152680074], [152681958, 152682134]]
ENST00000503160	[[152592014, 152592454], [152593913, 152594048], [152600964, 152601043], [152609781, 152609915], [152622480, 152622670], [152625002, 152625047], [152626336, 152626421], [152629139, 152629253], [152637160, 152637283], [152638027, 152638153], [152640576, 152640690], [152679923, 152680074], [152681958, 152682082]]	[[152638132, 152638153], [152640576, 152640690], [152679923, 152680074], [152681958, 152682082]]
ENST00000510720	[[152592039, 152592454], [152593913, 152594048], [152609781, 152609915], [152622480, 152622670]]	[[152593975, 152594048], [152609781, 152609915], [152622480, 152622670]]
ENST00000507592	[[152592095, 152592454], [152593913, 152594048], [152600964, 152601043], [152608059, 152608235]]	None
ENST00000513504	[[152592287, 152592454], [152593913, 152594048], [152600964, 152601043], [152609781, 152609915], [152612809, 152612876]]	None
ENST00000505211	[[152609888, 152609915], [152622480, 152622670], [152625002, 152625047], [152626336, 152626421], [152629139, 152629253], [152637160, 152637396]]	None
ENST00000515884	[[152622547, 152622670], [152625002, 152625047], [152626336, 152626421], [152629139, 152629253], [152640576, 152640690], [152679923, 152680074], [152681958, 152682105]]	[[152629241, 152629253], [152640576, 152640690], [152679923, 152680074], [152681958, 152682105]]
ENST00000511538	[[152624330, 152625047], [152626336, 152626421], [152629139, 152629253], [152640576, 152640690], [152679923, 152680074], [152681958, 152682122]]	[[152629241, 152629253], [152640576, 152640690], [152679923, 152680074], [152681958, 152682122]]
ENST00000512306	[[152624493, 152625047], [152626336, 152626421], [152629139, 152629253], [152637160, 152637283], [152638027, 152638226], [152640576, 152640690], [152679923, 152680074], [152681958, 152682137]]	[[152624935, 152625047], [152626336, 152626421], [152629139, 152629253], [152637160, 152637283], [152638027, 152638226], [152640576, 152640690], [152679923, 152680074], [152681958, 152682134]]
ENST00000515490	[[152626381, 152626421], [152629139, 152629253], [152637160, 152637283], [152638027, 152638483]]	None
ENST00000508611	[[152643097, 152643367], [152679923, 152680074], [152681958, 152682142]]	[[152643346, 152643367], [152679923, 152680074], [152681958, 152682134]]
NM_004564	[[152591807, 152592454], [152593913, 152594048], [152600964, 152601043], [152609781, 152609915], [152622480, 152622670], [152625002, 152625047], [152626336, 152626421], [152629139, 152629253], [152637160, 152637283], [152638027, 152638226], [152640576, 152640690], [152679923, 152680074], [152681958, 152682175]]	[[152592325, 152592454], [152593913, 152594048], [152600964, 152601043], [152609781, 152609915], [152622480, 152622670], [152625002, 152625047], [152626336, 152626421], [152629139, 152629253], [152637160, 152637283], [152638027, 152638226], [152640576, 152640690], [152679923, 152680074], [152681958, 152682134]]