PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000296029	[[74846793, 74847008], [74847133, 74847260], [74847579, 74847841]]	[[74846920, 74847008], [74847133, 74847260], [74847579, 74847670]]
NM_002619	[[74846541, 74847008], [74847133, 74847260], [74847579, 74847841]]	[[74846920, 74847008], [74847133, 74847260], [74847579, 74847670]]

Promoter

Chrom	Start	End	Description
chr4	74847674	74847678	CAGE_peak_6_at_PF4_5end
chr4	74847682	74847730	CAGE_peak_2_at_PF4_5end
chr4	74847731	74847751	CAGE_peak_1_at_PF4_5end
chr4	74847800	74847828	CAGE_peak_3_at_PF4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I073984	73984439	73986352	0.63	[{'connected_gene': 'CXCL5', 'score': 11.07}, {'connected_gene': 'MTHFD2L', 'score': 10.21}, {'connected_gene': 'PF4V1', 'score': 9.11}, {'connected_gene': 'PPBP', 'score': 0.77}, {'connected_gene': 'PF4', 'score': 0.77}]
chr4	GH04I073965	73965064	73965201	0.59	[{'connected_gene': 'PPBP', 'score': 12.28}, {'connected_gene': 'PF4V1', 'score': 10.85}, {'connected_gene': 'MTHFD2L', 'score': 10.06}, {'connected_gene': 'PF4', 'score': 0.37}, {'connected_gene': 'PIR32408', 'score': 0.37}]
chr4	GH04I073923	73923201	73923401	0.52	[{'connected_gene': 'PPBP', 'score': 10.86}, {'connected_gene': 'MTHFD2L', 'score': 10.25}, {'connected_gene': 'PF4V1', 'score': 10.06}, {'connected_gene': 'PF4', 'score': 9.43}, {'connected_gene': 'HNRNPA1P55', 'score': 0.37}, {'connected_gene': 'CXCL1', 'score': 0.23}]
chr4	GH04I073902	73902160	73902633	0.43	[{'connected_gene': 'PF4V1', 'score': 10.44}, {'connected_gene': 'PPBP', 'score': 10.42}, {'connected_gene': 'MTHFD2L', 'score': 10.26}, {'connected_gene': 'PF4', 'score': 4.9}, {'connected_gene': 'CXCL1', 'score': 0.29}, {'connected_gene': 'HNRNPA1P55', 'score': 0.28}]
chr4	GH04I073872	73872001	73873520	1.01	[{'connected_gene': 'PF4V1', 'score': 8.08}, {'connected_gene': 'CXCL8', 'score': 7.88}, {'connected_gene': 'PF4', 'score': 7.02}, {'connected_gene': 'PPBP', 'score': 3.46}, {'connected_gene': 'CXCL3', 'score': 2.71}, {'connected_gene': 'EREG', 'score': 2.45}, {'connected_gene': 'CXCL2', 'score': 2.28}, {'connected_gene': 'CXCL1', 'score': 0.77}, {'connected_gene': 'HNRNPA1P55', 'score': 0.2}]
chr4	GH04I073978	73978504	73979658	0.59	[{'connected_gene': 'PF4', 'score': 12.07}, {'connected_gene': 'CXCL5', 'score': 6.59}, {'connected_gene': 'PF4V1', 'score': 6.52}, {'connected_gene': 'PIR32408', 'score': 0.31}]
chr4	GH04I073874	73874484	73874756	0.41	[{'connected_gene': 'PF4', 'score': 8.76}, {'connected_gene': 'CXCL8', 'score': 6.74}, {'connected_gene': 'PPBP', 'score': 5.03}, {'connected_gene': 'PF4V1', 'score': 3.84}, {'connected_gene': 'CXCL3', 'score': 2.92}, {'connected_gene': 'CXCL2', 'score': 2.56}, {'connected_gene': 'EREG', 'score': 2.45}, {'connected_gene': 'CXCL1', 'score': 0.44}, {'connected_gene': 'HNRNPA1P55', 'score': 0.2}]
chr4	GH04I074004	74004207	74007572	1	[{'connected_gene': 'PF4', 'score': 7.4}, {'connected_gene': 'RN7SL218P', 'score': 0.44}, {'connected_gene': 'CXCL5', 'score': 0.44}]
chr4	GH04I073981	73981801	73982201	1.46	[{'connected_gene': 'PF4', 'score': 550.77}, {'connected_gene': 'PIR32408', 'score': 0.29}]
chr4	GH04I073762	73762581	73762748	0.49	[{'connected_gene': 'CXCL8', 'score': 14.37}, {'connected_gene': 'PF4V1', 'score': 11.67}, {'connected_gene': 'CXCL6', 'score': 4.57}, {'connected_gene': 'PPBP', 'score': 1.72}, {'connected_gene': 'PF4', 'score': 1.3}, {'connected_gene': 'GC04P073743', 'score': 0.37}, {'connected_gene': 'ENSG00000249051', 'score': 0.37}]
chr4	GH04I073899	73899380	73899773	0.3	[{'connected_gene': 'CXCL3', 'score': 11.4}, {'connected_gene': 'PF4V1', 'score': 10.9}, {'connected_gene': 'CXCL8', 'score': 9.16}, {'connected_gene': 'EREG', 'score': 7.81}, {'connected_gene': 'PF4', 'score': 6.71}, {'connected_gene': 'CXCL2', 'score': 6.31}, {'connected_gene': 'CXCL1', 'score': 4.65}, {'connected_gene': 'CXCL6', 'score': 3.03}, {'connected_gene': 'HNRNPA1P55', 'score': 0.26}]
chr4	GH04I073860	73859604	73859833	0.38	[{'connected_gene': 'CXCL3', 'score': 10.4}, {'connected_gene': 'MTHFD2L', 'score': 9.74}, {'connected_gene': 'CXCL8', 'score': 9.37}, {'connected_gene': 'PF4', 'score': 7.58}, {'connected_gene': 'CXCL1', 'score': 0.44}, {'connected_gene': 'PF4V1', 'score': 0.44}]
chr4	GH04I073915	73915852	73918740	1.07	[{'connected_gene': 'CXCL3', 'score': 17.96}, {'connected_gene': 'CXCL8', 'score': 15.07}, {'connected_gene': 'EREG', 'score': 14.97}, {'connected_gene': 'PF4', 'score': 9.23}, {'connected_gene': 'CXCL2', 'score': 8.39}, {'connected_gene': 'CXCL1', 'score': 2.43}, {'connected_gene': 'MTHFD2L', 'score': 1.65}, {'connected_gene': 'HNRNPA1P55', 'score': 0.34}]
chr4	GH04I073867	73867884	73871073	1.81	[{'connected_gene': 'CXCL1', 'score': 550.77}, {'connected_gene': 'PF4V1', 'score': 11.27}, {'connected_gene': 'PF4', 'score': 4.75}, {'connected_gene': 'HNRNPA1P55', 'score': 0.19}]