PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000446050	[[167453217, 167453611], [167506898, 167507166], [167508159, 167508390], [167510377, 167510572], [167512407, 167512612], [167525031, 167525129], [167540773, 167540860], [167542260, 167542350], [167543034, 167543356]]	[[167506916, 167507166], [167508159, 167508390], [167510377, 167510572], [167512407, 167512612], [167525031, 167525129], [167540773, 167540860], [167542260, 167542350], [167543034, 167543111]]
ENST00000295777	[[167453510, 167453923], [167506898, 167507166], [167508159, 167508390], [167510377, 167510572], [167512407, 167512612], [167525031, 167525129], [167540773, 167540860], [167542260, 167542350], [167543034, 167543354]]	[[167506916, 167507166], [167508159, 167508390], [167510377, 167510572], [167512407, 167512612], [167525031, 167525129], [167540773, 167540860], [167542260, 167542350], [167543034, 167543111]]
ENST00000472747	[[167453512, 167453600], [167506898, 167507166], [167508159, 167508390], [167510377, 167510572], [167512407, 167512467]]	[[167506916, 167507166], [167508159, 167508390], [167510377, 167510572], [167512407, 167512467]]
ENST00000472941	[[167453030, 167453113], [167506898, 167507166], [167508159, 167508390]]	[[167506916, 167507166], [167508159, 167508390]]
ENST00000488374	[[167517833, 167517910], [167525031, 167525129], [167540773, 167540860], [167542260, 167542350], [167543034, 167543350]]	None
ENST00000466865	[[167525025, 167525129], [167540773, 167540860], [167542260, 167542350], [167543034, 167543348]]	[[167525025, 167525129], [167540773, 167540860], [167542260, 167542350], [167543034, 167543111]]
ENST00000494666	[[167540723, 167540860], [167542260, 167542350], [167543034, 167543348]]	None
NM_001122752	[[167453431, 167453611], [167506898, 167507166], [167508159, 167508390], [167510377, 167510572], [167512407, 167512612], [167525031, 167525129], [167540773, 167540860], [167542260, 167542350], [167543034, 167543357]]	[[167506916, 167507166], [167508159, 167508390], [167510377, 167510572], [167512407, 167512612], [167525031, 167525129], [167540773, 167540860], [167542260, 167542350], [167543034, 167543111]]
NM_005025	[[167453510, 167453923], [167506898, 167507166], [167508159, 167508390], [167510377, 167510572], [167512407, 167512612], [167525031, 167525129], [167540773, 167540860], [167542260, 167542350], [167543034, 167543357]]	[[167506916, 167507166], [167508159, 167508390], [167510377, 167510572], [167512407, 167512612], [167525031, 167525129], [167540773, 167540860], [167542260, 167542350], [167543034, 167543111]]

Promoter

Chrom	Start	End	Description
chr3	167452852	167452864	CAGE_peak_6_at_SERPINI1_5end
chr3	167452969	167453019	CAGE_peak_2_at_SERPINI1_5end
chr3	167453026	167453051	CAGE_peak_4_at_SERPINI1_5end
chr3	167453462	167453471	CAGE_peak_5_at_SERPINI1_5end
chr3	167453476	167453487	CAGE_peak_3_at_SERPINI1_5end
chr3	167453493	167453533	CAGE_peak_1_at_SERPINI1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I167882	167882001	167882200	0.59	[{'connected_gene': 'LRRC77P', 'score': 28.24}, {'connected_gene': 'SERPINI1', 'score': 10.46}, {'connected_gene': 'PDCD10', 'score': 10.46}, {'connected_gene': 'MEMO1P3', 'score': 0.44}, {'connected_gene': 'ENSG00000244706', 'score': 0.39}]
chr3	GH03I167814	167814473	167814662	0.57	[{'connected_gene': 'LRRC77P', 'score': 0.23}, {'connected_gene': 'SERPINI1', 'score': 0.18}, {'connected_gene': 'PDCD10', 'score': 0.18}]
chr3	GH03I167815	167814693	167815001	0.74	[{'connected_gene': 'LRRC77P', 'score': 0.25}, {'connected_gene': 'SERPINI1', 'score': 0.18}, {'connected_gene': 'PDCD10', 'score': 0.18}]
chr3	GH03I167816	167813213	167813362	0.72	[{'connected_gene': 'LRRC77P', 'score': 0.23}, {'connected_gene': 'SERPINI1', 'score': 0.18}, {'connected_gene': 'PDCD10', 'score': 0.18}]
chr3	GH03I167813	167813844	167814071	0.2	[{'connected_gene': 'SERPINI1', 'score': 4.53}, {'connected_gene': 'LRRC77P', 'score': 0.23}, {'connected_gene': 'PDCD10', 'score': 0.18}]
chr3	GH03I167684	167684513	167684662	0.6	[{'connected_gene': 'SERPINI1', 'score': 17.08}, {'connected_gene': 'WDR49', 'score': 11.6}, {'connected_gene': 'PDCD10', 'score': 11.13}, {'connected_gene': 'ZBBX', 'score': 10.83}, {'connected_gene': 'HMGN1P8', 'score': 0.39}, {'connected_gene': 'GC03P167665', 'score': 0.37}]
chr3	GH03I167650	167650601	167651200	0.2	[{'connected_gene': 'SERPINI1', 'score': 6.8}, {'connected_gene': 'WDR49', 'score': 0.77}, {'connected_gene': 'GC03M167593', 'score': 0.22}]
chr3	GH03I167691	167691473	167691642	0.75	[{'connected_gene': 'SERPINI1', 'score': 17.04}, {'connected_gene': 'PDCD10', 'score': 11.41}, {'connected_gene': 'ZBBX', 'score': 9.77}, {'connected_gene': 'HMGN1P8', 'score': 0.77}, {'connected_gene': 'GC03P167665', 'score': 0.31}]
chr3	GH03I167763	167763986	167764145	0.22	[{'connected_gene': 'SERPINI1', 'score': 5.38}, {'connected_gene': 'PDCD10', 'score': 0.31}, {'connected_gene': 'LRRC77P', 'score': 0.15}]
chr3	GH03I167773	167773916	167773975	0.73	[{'connected_gene': 'SERPINI1', 'score': 550.28}, {'connected_gene': 'PDCD10', 'score': 0.28}, {'connected_gene': 'LRRC77P', 'score': 0.16}]
chr3	GH03I167749	167749868	167751326	0.84	[{'connected_gene': 'SERPINI1', 'score': 9.75}, {'connected_gene': 'PDCD10', 'score': 0.37}, {'connected_gene': 'LRRC77P', 'score': 0.14}]
chr3	GH03I167732	167732134	167736877	2.08	[{'connected_gene': 'SERPINI1', 'score': 559.87}, {'connected_gene': 'PDCD10', 'score': 556.65}, {'connected_gene': 'HMGN1P8', 'score': 11.71}]
chr3	GH03I167717	167717073	167717222	0.76	[{'connected_gene': 'SERPINI1', 'score': 0.37}, {'connected_gene': 'PDCD10', 'score': 0.37}, {'connected_gene': 'HMGN1P8', 'score': 0.34}]
chr3	GH03I167456	167456427	167456705	0.22	[{'connected_gene': 'SERPINI1', 'score': 2.59}, {'connected_gene': 'LOC105374197', 'score': 0.39}, {'connected_gene': 'SERPINI2', 'score': 0.34}, {'connected_gene': 'LINC01327', 'score': 0.21}]
chr3	GH03I167683	167683977	167684201	0.58	[{'connected_gene': 'WDR49', 'score': 11.6}, {'connected_gene': 'SERPINI1', 'score': 11.13}, {'connected_gene': 'PDCD10', 'score': 11.13}, {'connected_gene': 'ZBBX', 'score': 10.83}, {'connected_gene': 'HMGN1P8', 'score': 0.39}, {'connected_gene': 'GC03P167665', 'score': 0.37}]