PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000322191	[[91342744, 91344222], [91348408, 91348534], [91352953, 91353077], [91359008, 91359262], [91371452, 91371805], [91403453, 91403631]]	[[91344162, 91344222], [91348408, 91348534], [91352953, 91353077], [91359008, 91359262], [91371452, 91371805], [91403453, 91403481]]
ENST00000342512	[[91342744, 91344222], [91348408, 91348534], [91352953, 91353077], [91353569, 91353746], [91359008, 91359262], [91371452, 91371805], [91403453, 91403644]]	[[91344162, 91344222], [91348408, 91348534], [91352953, 91353077], [91353569, 91353746], [91359008, 91359262], [91371452, 91371805], [91403453, 91403481]]
ENST00000371774	[[91342745, 91344222], [91348408, 91348534], [91352953, 91353077], [91353569, 91353746], [91359008, 91359262], [91371452, 91371805], [91398905, 91398999], [91403453, 91403648]]	[[91344162, 91344222], [91348408, 91348534], [91352953, 91353077], [91353569, 91353746], [91359008, 91359262], [91371452, 91371805], [91398905, 91398999], [91403453, 91403468]]
ENST00000307534	[[91342748, 91344222], [91348408, 91348534], [91352953, 91353077], [91353569, 91353746], [91359008, 91359262], [91371452, 91371805], [91404356, 91405215]]	[[91344162, 91344222], [91348408, 91348534], [91352953, 91353077], [91353569, 91353746], [91359008, 91359262], [91371452, 91371805], [91404356, 91405059]]
ENST00000461829	[[91358918, 91359262], [91371452, 91371665]]	None
ENST00000488482	[[91385451, 91385610], [91385949, 91386006], [91386293, 91386389], [91403453, 91403713]]	None
NM_148978	[[91339253, 91344222], [91348408, 91348534], [91352953, 91353077], [91353569, 91353746], [91359008, 91359262], [91371452, 91371805], [91403453, 91403648]]	[[91344162, 91344222], [91348408, 91348534], [91352953, 91353077], [91353569, 91353746], [91359008, 91359262], [91371452, 91371805], [91403453, 91403481]]
NM_138316	[[91339253, 91344222], [91348408, 91348534], [91352953, 91353077], [91359008, 91359262], [91371452, 91371805], [91403453, 91403648]]	[[91344162, 91344222], [91348408, 91348534], [91352953, 91353077], [91359008, 91359262], [91371452, 91371805], [91403453, 91403481]]
NM_148977	[[91339253, 91344222], [91348408, 91348534], [91352953, 91353077], [91353569, 91353746], [91359008, 91359262], [91371452, 91371805], [91404356, 91405329]]	[[91344162, 91344222], [91348408, 91348534], [91352953, 91353077], [91353569, 91353746], [91359008, 91359262], [91371452, 91371805], [91404356, 91405059]]

Promoter

Chrom	Start	End	Description
chr10	91403575	91403590	CAGE_peak_3_at_PANK1_5end
chr10	91403625	91403649	CAGE_peak_4_at_PANK1_5end
chr10	91403656	91403688	CAGE_peak_2_at_PANK1_5end
chr10	91404961	91405020	CAGE_peak_1_at_PANK1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I089700	89700428	89703701	2.09	[{'connected_gene': 'KIF20B', 'score': 571.75}, {'connected_gene': 'ENSG00000235100', 'score': 23.05}, {'connected_gene': 'LINC00865', 'score': 18.81}, {'connected_gene': 'ENSG00000240996', 'score': 10.65}, {'connected_gene': 'PANK1', 'score': 5.51}, {'connected_gene': 'GC10P089733', 'score': 0.29}]
chr10	GH10I089707	89707601	89708000	0.62	[{'connected_gene': 'KIF20B', 'score': 14.46}, {'connected_gene': 'ENSG00000235100', 'score': 12.09}, {'connected_gene': 'PANK1', 'score': 5.5}, {'connected_gene': 'GC10P089733', 'score': 0.31}]
chr10	GH10I089658	89658844	89659963	0.57	[{'connected_gene': 'LINC00865', 'score': 19.7}, {'connected_gene': 'ENSG00000240996', 'score': 17.0}, {'connected_gene': 'KIF20B', 'score': 11.34}, {'connected_gene': 'SLC16A12-AS1', 'score': 8.97}, {'connected_gene': 'PANK1', 'score': 5.68}, {'connected_gene': 'ENSG00000235100', 'score': 5.28}, {'connected_gene': 'ENSG00000225836', 'score': 0.44}, {'connected_gene': 'GC10M089668', 'score': 0.39}]
chr10	GH10I089655	89655110	89656300	0.65	[{'connected_gene': 'LINC00865', 'score': 18.03}, {'connected_gene': 'PANK1', 'score': 8.2}, {'connected_gene': 'ENSG00000225836', 'score': 0.77}, {'connected_gene': 'GC10M089668', 'score': 0.37}]
chr10	GH10I089667	89667845	89669543	0.46	[{'connected_gene': 'LINC00865', 'score': 17.42}, {'connected_gene': 'PANK1', 'score': 15.18}, {'connected_gene': 'ENSG00000235100', 'score': 8.21}, {'connected_gene': 'GC10M089668', 'score': 0.44}, {'connected_gene': 'ENSG00000225836', 'score': 0.37}]
chr10	GH10I089641	89641864	89647579	2.28	[{'connected_gene': 'PANK1', 'score': 556.8}, {'connected_gene': 'ENSG00000249962', 'score': 550.77}, {'connected_gene': 'LOC105378421', 'score': 550.77}, {'connected_gene': 'KIF20B', 'score': 32.44}, {'connected_gene': 'ENSG00000235100', 'score': 30.5}, {'connected_gene': 'LINC00865', 'score': 18.76}, {'connected_gene': 'ENSG00000240996', 'score': 16.6}, {'connected_gene': 'ENSG00000225836', 'score': 0.44}, {'connected_gene': 'GC10M089601', 'score': 0.23}]
chr10	GH10I089637	89637264	89637413	0.38	[{'connected_gene': 'MIR107', 'score': 10.79}, {'connected_gene': 'KIF20B', 'score': 10.77}, {'connected_gene': 'ENSG00000235100', 'score': 10.74}, {'connected_gene': 'SLC16A12-AS1', 'score': 9.96}, {'connected_gene': 'ENSG00000249962', 'score': 0.44}, {'connected_gene': 'PANK1', 'score': 0.44}, {'connected_gene': 'GC10M089601', 'score': 0.26}]
chr10	GH10I089589	89589184	89589218	0.2	[{'connected_gene': 'SLC16A12-AS1', 'score': 9.68}, {'connected_gene': 'PANK1', 'score': 4.57}, {'connected_gene': 'MIR107', 'score': 0.77}, {'connected_gene': 'GC10M089602', 'score': 0.77}, {'connected_gene': 'GC10M089559', 'score': 0.39}]
chr10	GH10I089609	89609530	89610625	0.69	[{'connected_gene': 'ENSG00000240996', 'score': 10.11}, {'connected_gene': 'KIF20B', 'score': 10.1}, {'connected_gene': 'GC10M089601', 'score': 0.37}, {'connected_gene': 'ENSG00000249962', 'score': 0.28}, {'connected_gene': 'PANK1', 'score': 0.28}]
chr10	GH10I089793	89793744	89793933	0.62	[{'connected_gene': 'PIR43117', 'score': 550.77}, {'connected_gene': 'GC10M089794', 'score': 550.77}, {'connected_gene': 'LINC00865', 'score': 17.47}, {'connected_gene': 'ENSG00000240996', 'score': 5.68}, {'connected_gene': 'PANK1', 'score': 5.4}, {'connected_gene': 'PIR33661', 'score': 0.44}]
chr10	GH10I089620	89620464	89620613	0.52	[{'connected_gene': 'ENSG00000235100', 'score': 16.3}, {'connected_gene': 'ENSG00000240996', 'score': 10.06}, {'connected_gene': 'ENSG00000249962', 'score': 0.34}, {'connected_gene': 'GC10M089601', 'score': 0.31}, {'connected_gene': 'PANK1', 'score': 0.31}]
chr10	GH10I089632	89632672	89634171	0.78	[{'connected_gene': 'ENSG00000235100', 'score': 8.4}, {'connected_gene': 'ENSG00000240996', 'score': 5.8}, {'connected_gene': 'ENSG00000249962', 'score': 0.39}, {'connected_gene': 'PANK1', 'score': 0.39}, {'connected_gene': 'GC10M089601', 'score': 0.26}]
chr10	GH10I089590	89590474	89593215	0.91	[{'connected_gene': 'GC10M089601', 'score': 550.77}, {'connected_gene': 'MIR107', 'score': 550.77}, {'connected_gene': 'GC10M089602', 'score': 550.77}, {'connected_gene': 'PANK1', 'score': 5.08}, {'connected_gene': 'GC10M089559', 'score': 0.37}]
chr10	GH10I089699	89699544	89699693	0.89	[{'connected_gene': 'ENSG00000240996', 'score': 550.77}, {'connected_gene': 'FLJ37201', 'score': 550.77}, {'connected_gene': 'ENSG00000235100', 'score': 550.77}, {'connected_gene': 'KIF20B', 'score': 550.77}, {'connected_gene': 'LINC00865', 'score': 25.8}, {'connected_gene': 'PANK1', 'score': 5.52}]
chr10	GH10I089836	89836651	89838600	0.58	[{'connected_gene': 'PIR39292', 'score': 550.77}, {'connected_gene': 'GC10P089962', 'score': 550.77}, {'connected_gene': 'PIR32405', 'score': 550.77}, {'connected_gene': 'GC10P089960', 'score': 550.77}, {'connected_gene': 'GC10P089957', 'score': 550.77}, {'connected_gene': 'GC10P089956', 'score': 550.77}, {'connected_gene': 'PIR58202', 'score': 550.77}, {'connected_gene': 'GC10P089961', 'score': 550.77}, {'connected_gene': 'PIR50314', 'score': 550.77}, {'connected_gene': 'GC10P089964', 'score': 550.77}, {'connected_gene': 'GC10P089958', 'score': 550.77}, {'connected_gene': 'PIR46943', 'score': 550.77}, {'connected_gene': 'GC10P089963', 'score': 550.77}, {'connected_gene': 'PIR62889', 'score': 550.77}, {'connected_gene': 'MARK2P16', 'score': 550.77}, {'connected_gene': 'PIR58664', 'score': 550.77}, {'connected_gene': 'PIR40019', 'score': 550.77}, {'connected_gene': 'PIR56115', 'score': 550.77}, {'connected_gene': 'PIR38102', 'score': 550.77}, {'connected_gene': 'PIR49207', 'score': 550.77}, {'connected_gene': 'PIR50043', 'score': 550.77}, {'connected_gene': 'GC10P089959', 'score': 550.77}, {'connected_gene': 'LINC00865', 'score': 56.97}, {'connected_gene': 'PANK1', 'score': 5.17}, {'connected_gene': 'GC10M089832', 'score': 0.44}, {'connected_gene': 'PIR58338', 'score': 0.44}]