PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000375835	[[91628059, 91628490], [91652907, 91653203], [91656940, 91657099], [91660660, 91660748], [91661758, 91661909], [91666951, 91667078], [91680443, 91680495], [91686113, 91686167], [91690023, 91690143], [91692754, 91692818], [91727470, 91727541], [91792901, 91793682]]	[[91628361, 91628490], [91652907, 91653203], [91656940, 91657099], [91660660, 91660748], [91661758, 91661909], [91666951, 91667078], [91680443, 91680495], [91686113, 91686167], [91690023, 91690143], [91692754, 91692818], [91727470, 91727541], [91792901, 91793375]]
ENST00000375830	[[91652423, 91652441], [91652907, 91653203], [91656940, 91657099], [91660660, 91660748], [91661758, 91661909], [91666951, 91667078], [91680443, 91680495], [91686113, 91686167], [91690023, 91690143], [91692754, 91692818], [91727470, 91727541], [91792901, 91793682]]	[[91652423, 91652441], [91652907, 91653203], [91656940, 91656944]]
ENST00000375831	[[91652280, 91652441], [91652907, 91653203], [91656940, 91657052]]	[[91652423, 91652441], [91652907, 91653203], [91656940, 91656944]]
NM_016848	[[91620685, 91628490], [91652907, 91653203], [91656940, 91657099], [91660660, 91660748], [91661758, 91661909], [91666951, 91667078], [91680443, 91680495], [91686113, 91686167], [91690023, 91690143], [91692754, 91692818], [91727470, 91727541], [91792901, 91793682]]	[[91628361, 91628490], [91652907, 91653203], [91656940, 91657099], [91660660, 91660748], [91661758, 91661909], [91666951, 91667078], [91680443, 91680495], [91686113, 91686167], [91690023, 91690143], [91692754, 91692818], [91727470, 91727541], [91792901, 91793375]]

Promoter

Chrom	Start	End	Description
chr9	91792949	91792960	CAGE_peak_13_at_SHC3_5end
chr9	91793477	91793488	CAGE_peak_6_at_SHC3_5end
chr9	91793624	91793649	CAGE_peak_2_at_SHC3_5end
chr9	91793675	91793698	CAGE_peak_4_at_SHC3_5end
chr9	91793707	91793718	CAGE_peak_5_at_SHC3_5end
chr9	91793725	91793743	CAGE_peak_1_at_SHC3_5end
chr9	91793746	91793756	CAGE_peak_7_at_SHC3_5end
chr9	91793943	91793955	CAGE_peak_8_at_SHC3_5end
chr9	91793987	91794052	CAGE_peak_3_at_SHC3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I089518	89518345	89527800	1.53	[{'connected_gene': 'SECISBP2', 'score': 24.87}, {'connected_gene': 'SEMA4D', 'score': 18.41}, {'connected_gene': 'SHC3', 'score': 1.56}, {'connected_gene': 'LOC105376137', 'score': 0.77}]
chr9	GH09I089175	89175909	89181345	2.48	[{'connected_gene': 'SHC3', 'score': 567.8}, {'connected_gene': 'SECISBP2', 'score': 15.76}, {'connected_gene': 'C9orf47', 'score': 2.91}, {'connected_gene': 'ENSG00000224945', 'score': 0.2}]
chr9	GH09I089136	89136157	89140528	1.19	[{'connected_gene': 'SHC3', 'score': 27.17}, {'connected_gene': 'ENSG00000224945', 'score': 11.26}, {'connected_gene': 'CKS2', 'score': 5.44}]
chr9	GH09I089152	89152952	89156112	1.06	[{'connected_gene': 'SHC3', 'score': 22.91}, {'connected_gene': 'ENSG00000224945', 'score': 11.6}, {'connected_gene': 'CKS2', 'score': 6.51}]
chr9	GH09I089024	89024601	89026252	0.46	[{'connected_gene': 'SHC3', 'score': 5.2}, {'connected_gene': 'GC09M089006', 'score': 0.39}, {'connected_gene': 'ENSG00000224945', 'score': 0.18}]
chr9	GH09I089020	89020114	89024076	0.92	[{'connected_gene': 'SHC3', 'score': 5.32}, {'connected_gene': 'GC09M089006', 'score': 0.39}, {'connected_gene': 'ENSG00000224945', 'score': 0.17}]
chr9	GH09I089274	89274482	89275791	0.31	[{'connected_gene': 'SHC3', 'score': 4.6}, {'connected_gene': 'GC09M089309', 'score': 0.28}, {'connected_gene': 'PIR43267', 'score': 0.21}]
chr9	GH09I089174	89174068	89175094	0.2	[{'connected_gene': 'SHC3', 'score': 5.66}, {'connected_gene': 'ENSG00000224945', 'score': 0.21}]
chr9	GH09I089367	89367599	89371310	0.64	[{'connected_gene': 'CKS2', 'score': 11.81}, {'connected_gene': 'SEMA4D', 'score': 4.74}, {'connected_gene': 'SHC3', 'score': 4.3}, {'connected_gene': 'PIR43063', 'score': 0.39}, {'connected_gene': 'PA2G4P6', 'score': 0.18}]
chr9	GH09I089140	89140551	89141644	0.4	[{'connected_gene': 'ENSG00000224945', 'score': 15.39}, {'connected_gene': 'SHC3', 'score': 11.07}, {'connected_gene': 'PA2G4P6', 'score': 4.27}]
chr9	GH09I089026	89026986	89027135	0.31	[{'connected_gene': 'GC09M089006', 'score': 0.37}, {'connected_gene': 'ENSG00000224945', 'score': 0.18}, {'connected_gene': 'SHC3', 'score': 0.1}]
chr9	GH09I089079	89079006	89079135	0.43	[{'connected_gene': 'ENSG00000224945', 'score': 0.29}, {'connected_gene': 'GC09M089006', 'score': 0.2}, {'connected_gene': 'SHC3', 'score': 0.15}]
chr9	GH09I089116	89116106	89116315	0.38	[{'connected_gene': 'ENSG00000224945', 'score': 0.44}, {'connected_gene': 'SHC3', 'score': 0.2}]
chr9	GH09I089036	89036001	89039371	0.86	[{'connected_gene': 'ENSG00000224945', 'score': 5.74}, {'connected_gene': 'SEMA4D', 'score': 5.34}, {'connected_gene': 'SECISBP2', 'score': 4.77}, {'connected_gene': 'SHC3', 'score': 2.85}, {'connected_gene': 'C9orf47', 'score': 1.57}, {'connected_gene': 'GC09M089006', 'score': 0.31}]