PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000260843	[[151011890, 151012999], [151017854, 151017986], [151034373, 151034740]]	[[151011956, 151012999], [151017854, 151017888]]
NM_023915	[[151011873, 151012999], [151017854, 151017986], [151034373, 151034636]]	[[151011956, 151012999], [151017854, 151017888]]

Promoter

Chrom	Start	End	Description
chr3	151034414	151034434	CAGE_peak_2_at_GPR87_5end
chr3	151034539	151034548	CAGE_peak_3_at_GPR87_5end
chr3	151034583	151034678	CAGE_peak_1_at_GPR87_5end
chr3	151034716	151034726	CAGE_peak_5_at_GPR87_5end
chr3	151034734	151034745	CAGE_peak_7_at_GPR87_5end
chr3	151034746	151034757	CAGE_peak_6_at_GPR87_5end
chr3	151034768	151034781	CAGE_peak_4_at_GPR87_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I151274	151274803	151280877	1.71	[{'connected_gene': 'P2RY14', 'score': 559.06}, {'connected_gene': 'GC03P151277', 'score': 550.77}, {'connected_gene': 'GPR87', 'score': 19.82}, {'connected_gene': 'P2RY13', 'score': 12.27}, {'connected_gene': 'EIF2A', 'score': 4.35}, {'connected_gene': 'MED12L', 'score': 0.08}]
chr3	GH03I151216	151216793	151216982	0.31	[{'connected_gene': 'P2RY14', 'score': 11.79}, {'connected_gene': 'GPR87', 'score': 10.38}, {'connected_gene': 'MED12L', 'score': 9.19}, {'connected_gene': 'GPR171', 'score': 0.39}, {'connected_gene': 'GC03M151222', 'score': 0.37}]
chr3	GH03I151209	151209325	151211755	1.12	[{'connected_gene': 'P2RY14', 'score': 11.79}, {'connected_gene': 'GPR87', 'score': 10.38}, {'connected_gene': 'MED12L', 'score': 9.2}, {'connected_gene': 'GPR171', 'score': 0.44}, {'connected_gene': 'GC03M151222', 'score': 0.31}]
chr3	GH03I151309	151309326	151310227	0.4	[{'connected_gene': 'P2RY14', 'score': 15.72}, {'connected_gene': 'GPR87', 'score': 0.44}, {'connected_gene': 'PIR58282', 'score': 0.39}, {'connected_gene': 'MED12L', 'score': 0.07}]
chr3	GH03I151264	151264797	151267000	1.2	[{'connected_gene': 'P2RY14', 'score': 21.66}, {'connected_gene': 'GPR87', 'score': 18.17}, {'connected_gene': 'SETP11', 'score': 0.77}, {'connected_gene': 'GC03P151250', 'score': 0.37}, {'connected_gene': 'MED12L', 'score': 0.09}]
chr3	GH03I151303	151303768	151308855	1.32	[{'connected_gene': 'P2RY14', 'score': 17.57}, {'connected_gene': 'P2RY13', 'score': 11.62}, {'connected_gene': 'IGSF10', 'score': 9.41}, {'connected_gene': 'GPR87', 'score': 6.95}, {'connected_gene': 'PIR58282', 'score': 0.44}, {'connected_gene': 'MED12L', 'score': 0.07}]
chr3	GH03I151182	151182801	151184123	0.7	[{'connected_gene': 'P2RY14', 'score': 11.55}, {'connected_gene': 'MED12L', 'score': 10.37}, {'connected_gene': 'GPR87', 'score': 10.2}, {'connected_gene': 'GPR171', 'score': 6.79}, {'connected_gene': 'AADAC', 'score': 4.51}, {'connected_gene': 'GC03P151189', 'score': 0.77}, {'connected_gene': 'GC03M151148', 'score': 0.31}]
chr3	GH03I151348	151348338	151348589	0.25	[{'connected_gene': 'P2RY12', 'score': 17.36}, {'connected_gene': 'GPR87', 'score': 15.25}, {'connected_gene': 'P2RY14', 'score': 4.7}, {'connected_gene': 'MED12L', 'score': 1.77}, {'connected_gene': 'P2RY13', 'score': 0.37}]
chr3	GH03I151382	151382277	151385200	1.42	[{'connected_gene': 'P2RY12', 'score': 574.29}, {'connected_gene': 'GPR87', 'score': 10.53}, {'connected_gene': 'P2RY13', 'score': 0.23}, {'connected_gene': 'MED12L', 'score': 0.06}]
chr3	GH03I151317	151317965	151320542	0.92	[{'connected_gene': 'GPR87', 'score': 8.48}, {'connected_gene': 'P2RY14', 'score': 6.7}, {'connected_gene': 'P2RY13', 'score': 0.39}, {'connected_gene': 'MED12L', 'score': 0.07}]
chr3	GH03I151282	151282993	151283162	0.82	[{'connected_gene': 'GPR87', 'score': 11.42}, {'connected_gene': 'P2RY14', 'score': 0.77}, {'connected_gene': 'PIR58282', 'score': 0.37}, {'connected_gene': 'MED12L', 'score': 0.08}]
chr3	GH03I151284	151284000	151284401	1.23	[{'connected_gene': 'GPR87', 'score': 11.42}, {'connected_gene': 'P2RY14', 'score': 0.44}, {'connected_gene': 'PIR58282', 'score': 0.39}, {'connected_gene': 'MED12L', 'score': 0.08}]
chr3	GH03I151281	151281507	151282746	0.69	[{'connected_gene': 'GPR87', 'score': 11.42}, {'connected_gene': 'P2RY14', 'score': 0.77}, {'connected_gene': 'GC03P151277', 'score': 0.77}, {'connected_gene': 'PIR58282', 'score': 0.37}, {'connected_gene': 'MED12L', 'score': 0.08}]
chr3	GH03I151314	151314445	151317465	1.33	[{'connected_gene': 'GPR87', 'score': 557.06}, {'connected_gene': 'P2RY14', 'score': 10.49}, {'connected_gene': 'PIR58282', 'score': 0.37}, {'connected_gene': 'MED12L', 'score': 0.07}]
chr3	GH03I151271	151271477	151272512	0.2	[{'connected_gene': 'GPR87', 'score': 7.55}, {'connected_gene': 'P2RY14', 'score': 5.14}, {'connected_gene': 'SETP11', 'score': 0.77}, {'connected_gene': 'GC03P151277', 'score': 0.44}, {'connected_gene': 'MED12L', 'score': 0.09}]
chr3	GH03I151350	151350601	151352800	0.68	[{'connected_gene': 'GPR87', 'score': 17.13}, {'connected_gene': 'P2RY13', 'score': 12.42}, {'connected_gene': 'P2RY12', 'score': 5.23}, {'connected_gene': 'P2RY14', 'score': 4.19}, {'connected_gene': 'MED12L', 'score': 0.06}]
chr3	GH03I151639	151639193	151639402	0.49	[{'connected_gene': 'GPR87', 'score': 9.89}, {'connected_gene': 'LINC02066', 'score': 0.39}, {'connected_gene': 'GC03P151657', 'score': 0.37}, {'connected_gene': 'GC03M151629', 'score': 0.28}]
chr3	GH03I151345	151345601	151348090	0.87	[{'connected_gene': 'P2RY13', 'score': 25.99}, {'connected_gene': 'GPR87', 'score': 19.26}, {'connected_gene': 'P2RY14', 'score': 11.8}, {'connected_gene': 'P2RY12', 'score': 5.1}, {'connected_gene': 'CLRN1', 'score': 2.22}, {'connected_gene': 'MED12L', 'score': 0.07}]
chr3	GH03I151325	151325601	151325800	0.2	[{'connected_gene': 'P2RY13', 'score': 0.77}, {'connected_gene': 'GPR87', 'score': 0.44}, {'connected_gene': 'MED12L', 'score': 0.07}]
chr3	GH03I151327	151327894	151329360	0.96	[{'connected_gene': 'P2RY13', 'score': 550.77}, {'connected_gene': 'GPR87', 'score': 0.39}, {'connected_gene': 'MED12L', 'score': 0.07}]
chr3	GH03I151301	151301191	151302887	0.51	[{'connected_gene': 'P2RY13', 'score': 11.24}, {'connected_gene': 'IGSF10', 'score': 9.41}, {'connected_gene': 'P2RY14', 'score': 6.89}, {'connected_gene': 'PIR58282', 'score': 0.77}, {'connected_gene': 'GPR87', 'score': 0.39}, {'connected_gene': 'MED12L', 'score': 0.08}]
chr3	GH03I151298	151298770	151298924	0.22	[{'connected_gene': 'PIR58282', 'score': 550.77}, {'connected_gene': 'P2RY12', 'score': 15.38}, {'connected_gene': 'P2RY13', 'score': 10.99}, {'connected_gene': 'P2RY14', 'score': 10.9}, {'connected_gene': 'GPR87', 'score': 4.55}, {'connected_gene': 'MED12L', 'score': 3.86}]