PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000452177	[[946553, 946754], [1079203, 1079341], [1093881, 1093938], [1094038, 1094096], [1099090, 1099128], [1133307, 1133351], [1133453, 1133495], [1156117, 1157357]]	[[946682, 946754], [1079203, 1079341], [1093881, 1093938], [1094038, 1094096], [1099090, 1099128], [1133307, 1133334]]
ENST00000450962	[[946553, 946754], [1079203, 1079341], [1093881, 1093938], [1094038, 1094096], [1099090, 1099128], [1133307, 1133351], [1133453, 1133495], [1161233, 1161321]]	[[946682, 946754], [1079203, 1079341], [1093881, 1093938], [1094038, 1094096], [1099090, 1099128], [1133307, 1133334]]
ENST00000308624	[[946553, 946754], [1079203, 1079341], [1093881, 1093938], [1094038, 1094096], [1133307, 1133351], [1133453, 1133495], [1161233, 1161321], [1168777, 1168869], [1204788, 1204916], [1241659, 1241789], [1243509, 1243548], [1251098, 1251215], [1263141, 1263213], [1271136, 1271343], [1312265, 1312358], [1320036, 1320147], [1371114, 1371385]]	[[946682, 946754], [1079203, 1079341], [1093881, 1093938], [1094038, 1094096], [1133307, 1133351], [1133453, 1133495], [1161233, 1161321], [1168777, 1168869], [1204788, 1204916], [1241659, 1241789], [1243509, 1243548], [1251098, 1251215], [1263141, 1263213], [1271136, 1271343], [1312265, 1312358], [1320036, 1320147], [1371114, 1371246]]
ENST00000407292	[[946624, 946754], [1079203, 1079341], [1204788, 1204916], [1241659, 1241789], [1243509, 1243548], [1251098, 1251215], [1263141, 1263213], [1271136, 1271343], [1312265, 1312358], [1320036, 1320147], [1371114, 1371385]]	[[946682, 946754], [1079203, 1079341], [1204788, 1204916], [1241659, 1241789], [1243509, 1243548], [1251098, 1251215], [1263141, 1263213], [1271136, 1271343], [1312265, 1312358], [1320036, 1320147], [1371114, 1371246]]
ENST00000463442	[[1098231, 1098396], [1099090, 1099128], [1133307, 1133351], [1133453, 1133495], [1161233, 1161321], [1168777, 1168869], [1204788, 1204916]]	None
ENST00000467759	[[1158932, 1158975], [1161233, 1161321], [1168777, 1168869], [1204788, 1204916], [1206142, 1206365], [1215567, 1215743]]	None
ENST00000475201	[[1158932, 1158975], [1161233, 1161321], [1168777, 1168869], [1215567, 1215743]]	None
ENST00000494178	[[1159248, 1159411], [1161233, 1161321], [1168777, 1168869], [1204788, 1204916], [1243509, 1243548], [1246509, 1246557]]	None
ENST00000471239	[[1266615, 1266721], [1271136, 1271343], [1312265, 1312358], [1320036, 1320147], [1371114, 1371220]]	None
ENST00000498321	[[1204814, 1204916], [1206142, 1206365], [1215567, 1215743]]	None
ENST00000489646	[[1251096, 1251215], [1260176, 1260376]]	None
ENST00000472606	[[1357459, 1357636], [1371114, 1371385]]	None
NM_018968	[[946553, 946754], [1079203, 1079341], [1093881, 1093938], [1094038, 1094096], [1133307, 1133351], [1133453, 1133495], [1161233, 1161321], [1168777, 1168869], [1204788, 1204916], [1241659, 1241789], [1243509, 1243548], [1251098, 1251215], [1263141, 1263213], [1271136, 1271343], [1312265, 1312358], [1320036, 1320147], [1371114, 1371385]]	[[946682, 946754], [1079203, 1079341], [1093881, 1093938], [1094038, 1094096], [1133307, 1133351], [1133453, 1133495], [1161233, 1161321], [1168777, 1168869], [1204788, 1204916], [1241659, 1241789], [1243509, 1243548], [1251098, 1251215], [1263141, 1263213], [1271136, 1271343], [1312265, 1312358], [1320036, 1320147], [1371114, 1371246]]

Promoter

Chrom	Start	End	Description
chr2	946522	946540	CAGE_peak_2_at_SNTG2_5end
chr2	946543	946579	CAGE_peak_1_at_SNTG2_5end
chr2	1098240	1098249	CAGE_peak_3_at_SNTG2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I001366	1366371	1367062	0.69	[{'connected_gene': 'TPO', 'score': 0.44}, {'connected_gene': 'GC02P001350', 'score': 0.37}, {'connected_gene': 'SNTG2', 'score': 0.05}]
chr2	GH02I000949	949526	951201	1.16	[{'connected_gene': 'SNTG2', 'score': 550.77}, {'connected_gene': 'LOC105373352', 'score': 5.66}, {'connected_gene': 'LOC101060391', 'score': 0.77}, {'connected_gene': 'GC02P000941', 'score': 0.44}]
chr2	GH02I001052	1052504	1053448	0.2	[{'connected_gene': 'SNTG2', 'score': 6.32}, {'connected_gene': 'LOC101060391', 'score': 5.12}, {'connected_gene': 'GC02M001037', 'score': 0.39}, {'connected_gene': 'ENSG00000235403', 'score': 0.37}]
chr2	GH02I000946	946401	946600	0.2	[{'connected_gene': 'SNTG2', 'score': 0.77}, {'connected_gene': 'GC02P000941', 'score': 0.44}]
chr2	GH02I000923	923984	926184	0.43	[{'connected_gene': 'LOC101060391', 'score': 13.31}, {'connected_gene': 'SNTG2', 'score': 13.31}, {'connected_gene': 'SH3YL1', 'score': 5.64}, {'connected_gene': 'LINC01939', 'score': 5.34}, {'connected_gene': 'ENSG00000234796', 'score': 0.77}, {'connected_gene': 'GC02P000941', 'score': 0.37}]
chr2	GH02I001492	1492318	1494919	0.31	[{'connected_gene': 'ENSG00000236665', 'score': 10.99}, {'connected_gene': 'SNTG2', 'score': 10.96}, {'connected_gene': 'TPO', 'score': 7.43}, {'connected_gene': 'GC02M001476', 'score': 0.44}, {'connected_gene': 'GC02P001475', 'score': 0.37}, {'connected_gene': 'LOC102723730', 'score': 0.23}]
chr2	GH02I001486	1486782	1489208	0.43	[{'connected_gene': 'ENSG00000236665', 'score': 10.99}, {'connected_gene': 'SNTG2', 'score': 10.96}, {'connected_gene': 'TPO', 'score': 7.49}, {'connected_gene': 'GC02M001476', 'score': 0.77}, {'connected_gene': 'GC02P001475', 'score': 0.39}, {'connected_gene': 'LOC102723730', 'score': 0.21}]
chr2	GH02I001053	1053776	1056249	0.51	[{'connected_gene': 'GC02M001037', 'score': 0.39}, {'connected_gene': 'ENSG00000235403', 'score': 0.39}, {'connected_gene': 'SNTG2', 'score': 0.15}]
chr2	GH02I001119	1119558	1119570	0.24	[{'connected_gene': 'GC02P001119', 'score': 550.77}, {'connected_gene': 'GC02M001113', 'score': 550.77}, {'connected_gene': 'SNTG2', 'score': 5.89}]
chr2	GH02I000728	728195	730344	0.77	[{'connected_gene': 'ENSG00000227713', 'score': 550.77}, {'connected_gene': 'TMEM18', 'score': 8.51}, {'connected_gene': 'SNTG2', 'score': 5.53}, {'connected_gene': 'LOC105373358', 'score': 0.39}]
chr2	GH02I001162	1162098	1164054	0.72	[{'connected_gene': 'ENSG00000236665', 'score': 0.77}, {'connected_gene': 'LOC105373359', 'score': 0.1}, {'connected_gene': 'SNTG2', 'score': 0.08}]
chr2	GH02I001231	1231729	1231858	0.31	[{'connected_gene': 'ENSG00000236665', 'score': 0.19}, {'connected_gene': 'LOC105373359', 'score': 0.18}, {'connected_gene': 'SNTG2', 'score': 0.06}]
chr2	GH02I000973	973666	974780	0.51	[{'connected_gene': 'GC02M000985', 'score': 0.39}, {'connected_gene': 'LOC101060391', 'score': 0.37}, {'connected_gene': 'SNTG2', 'score': 0.34}]
chr2	GH02I000979	979401	979600	0.2	[{'connected_gene': 'GC02M000985', 'score': 0.44}, {'connected_gene': 'LOC101060391', 'score': 0.34}, {'connected_gene': 'SNTG2', 'score': 0.31}]