PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000532026	[[19138645, 19138687], [19164524, 19164670], [19167727, 19167850], [19169142, 19169220], [19170733, 19170802]]	None
ENST00000446113	[[19138675, 19138823], [19164524, 19164670], [19167727, 19167850], [19169142, 19169220], [19170733, 19170878], [19172273, 19172338], [19173704, 19173867], [19174105, 19174231], [19177342, 19177476], [19180486, 19180587], [19184849, 19184974], [19185847, 19185910], [19186598, 19186692], [19187848, 19187932], [19191957, 19192115], [19194269, 19194367], [19197368, 19197962]]	[[19138796, 19138823], [19164524, 19164670], [19167727, 19167850], [19169142, 19169220], [19170733, 19170878], [19172273, 19172338], [19173704, 19173867], [19174105, 19174231], [19177342, 19177476], [19180486, 19180587], [19184849, 19184974], [19185847, 19185910], [19186598, 19186692], [19187848, 19187932], [19191957, 19192115], [19194269, 19194367], [19197368, 19197507]]
ENST00000399351	[[19138691, 19138823], [19167727, 19167850], [19169142, 19169220], [19170733, 19170878], [19172273, 19172338], [19173704, 19173867], [19174105, 19174231], [19177342, 19177476], [19180486, 19180587], [19184849, 19184974], [19185847, 19185910], [19186598, 19186692], [19187848, 19187932], [19191957, 19192115], [19194269, 19194367], [19197368, 19197962]]	[[19170749, 19170878], [19172273, 19172338], [19173704, 19173867], [19174105, 19174231], [19177342, 19177476], [19180486, 19180587], [19184849, 19184974], [19185847, 19185910], [19186598, 19186692], [19187848, 19187932], [19191957, 19192115], [19194269, 19194367], [19197368, 19197507]]
ENST00000525490	[[19138702, 19138823], [19167727, 19167850], [19169142, 19169220], [19170733, 19170878], [19172273, 19172338], [19173704, 19173867], [19174105, 19174231], [19177342, 19177476], [19180486, 19180587], [19184849, 19184974], [19185847, 19185910], [19186598, 19186692], [19187848, 19192115], [19194269, 19194367], [19197368, 19197969]]	None
ENST00000524744	[[19138730, 19138823], [19139238, 19139486], [19140272, 19140364]]	None
ENST00000532812	[[19170160, 19170367], [19170733, 19170878], [19172273, 19172338], [19173704, 19173867], [19174105, 19174231], [19177342, 19177478]]	None
ENST00000530698	[[19170216, 19170298], [19170733, 19170878], [19172273, 19172338], [19173704, 19173867], [19174105, 19174172]]	None
ENST00000530100	[[19185828, 19186692], [19187848, 19188263]]	None
NM_001001483	[[19138691, 19138823], [19167727, 19167850], [19169142, 19169220], [19170733, 19170878], [19172273, 19172338], [19173704, 19173867], [19174105, 19174231], [19177342, 19177476], [19180486, 19180587], [19184849, 19184974], [19185847, 19185910], [19186598, 19186692], [19187848, 19187932], [19191957, 19192115], [19194269, 19194367], [19197368, 19197967]]	[[19170749, 19170878], [19172273, 19172338], [19173704, 19173867], [19174105, 19174231], [19177342, 19177476], [19180486, 19180587], [19184849, 19184974], [19185847, 19185910], [19186598, 19186692], [19187848, 19187932], [19191957, 19192115], [19194269, 19194367], [19197368, 19197507]]
NM_019028	[[19138691, 19138823], [19164524, 19164670], [19167727, 19167850], [19169142, 19169220], [19170733, 19170878], [19172273, 19172338], [19173704, 19173867], [19174105, 19174231], [19177342, 19177476], [19180486, 19180587], [19184849, 19184974], [19185847, 19185910], [19186598, 19186692], [19187848, 19187932], [19191957, 19192115], [19194269, 19194367], [19197368, 19197967]]	[[19138796, 19138823], [19164524, 19164670], [19167727, 19167850], [19169142, 19169220], [19170733, 19170878], [19172273, 19172338], [19173704, 19173867], [19174105, 19174231], [19177342, 19177476], [19180486, 19180587], [19184849, 19184974], [19185847, 19185910], [19186598, 19186692], [19187848, 19187932], [19191957, 19192115], [19194269, 19194367], [19197368, 19197507]]

Promoter

Chrom	Start	End	Description
chr11	19138670	19138732	CAGE_peak_1_at_ZDHHC13_5end
chr11	19138741	19138756	CAGE_peak_2_at_ZDHHC13_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I019216	19216805	19220451	0.96	[{'connected_gene': 'E2F8', 'score': 19.21}, {'connected_gene': 'ENSG00000255308', 'score': 12.72}, {'connected_gene': 'ZDHHC13', 'score': 10.15}, {'connected_gene': 'CSRP3', 'score': 0.44}]
chr11	GH11I019236	19236180	19245260	2.42	[{'connected_gene': 'E2F8', 'score': 550.77}, {'connected_gene': 'SPTY2D1', 'score': 26.54}, {'connected_gene': 'ENSG00000256361', 'score': 12.67}, {'connected_gene': 'ENSG00000256588', 'score': 12.66}, {'connected_gene': 'TSG101', 'score': 11.34}, {'connected_gene': 'ZDHHC13', 'score': 10.67}, {'connected_gene': 'LOC105376580', 'score': 6.78}, {'connected_gene': 'CSRP3', 'score': 0.29}, {'connected_gene': 'ENSG00000255308', 'score': 0.26}]
chr11	GH11I019079	19079102	19081476	0.82	[{'connected_gene': 'ZDHHC13', 'score': 18.41}, {'connected_gene': 'PTPN5', 'score': 4.25}, {'connected_gene': 'GC11P019071', 'score': 0.44}]
chr11	GH11I019172	19172537	19174989	1.16	[{'connected_gene': 'ZDHHC13', 'score': 14.99}, {'connected_gene': 'ENSG00000255308', 'score': 12.31}, {'connected_gene': 'CSRP3', 'score': 11.93}, {'connected_gene': 'GC11P019191', 'score': 0.37}]
chr11	GH11I019253	19253525	19254459	0.54	[{'connected_gene': 'ZDHHC13', 'score': 10.31}, {'connected_gene': 'PCNAP4', 'score': 4.71}, {'connected_gene': 'E2F8', 'score': 0.39}, {'connected_gene': 'ENSG00000255308', 'score': 0.22}]
chr11	GH11I019753	19753715	19753984	0.51	[{'connected_gene': 'ZDHHC13', 'score': 9.51}, {'connected_gene': 'MIR4694', 'score': 0.44}, {'connected_gene': 'LOC100126784', 'score': 0.28}, {'connected_gene': 'NAV2', 'score': 0.05}]
chr11	GH11I019750	19750818	19751625	0.2	[{'connected_gene': 'ZDHHC13', 'score': 9.51}, {'connected_gene': 'MIR4694', 'score': 0.44}, {'connected_gene': 'LOC100126784', 'score': 0.28}, {'connected_gene': 'NAV2', 'score': 0.05}]
chr11	GH11I019077	19077242	19077243	0.57	[{'connected_gene': 'ZDHHC13', 'score': 10.92}, {'connected_gene': 'GC11P019071', 'score': 0.44}]
chr11	GH11I019087	19087243	19088313	0.31	[{'connected_gene': 'ZDHHC13', 'score': 18.87}, {'connected_gene': 'GC11P019071', 'score': 0.37}]
chr11	GH11I019116	19116477	19118616	1.98	[{'connected_gene': 'ZDHHC13', 'score': 560.4}, {'connected_gene': 'GC11P019191', 'score': 0.19}]
chr11	GH11I019180	19180915	19181903	0.38	[{'connected_gene': 'ZDHHC13', 'score': 9.76}, {'connected_gene': 'GC11P019191', 'score': 0.39}]
chr11	GH11I019073	19073894	19074664	0.49	[{'connected_gene': 'ZDHHC13', 'score': 17.21}, {'connected_gene': 'GC11P019071', 'score': 0.77}]
chr11	GH11I019101	19101572	19103327	0.66	[{'connected_gene': 'ZDHHC13', 'score': 8.85}, {'connected_gene': 'GC11P019071', 'score': 0.29}]
chr11	GH11I018899	18899630	18901259	0.52	[{'connected_gene': 'LOC441592', 'score': 9.55}, {'connected_gene': 'PTPN5', 'score': 6.74}, {'connected_gene': 'ZDHHC13', 'score': 4.58}, {'connected_gene': 'LOC390099', 'score': 0.39}, {'connected_gene': 'LOC390098', 'score': 0.39}]
chr11	GH11I019183	19183947	19186544	0.43	[{'connected_gene': 'GTF2H1', 'score': 4.15}, {'connected_gene': 'GC11P019191', 'score': 0.44}, {'connected_gene': 'CSRP3', 'score': 0.31}, {'connected_gene': 'ZDHHC13', 'score': 0.2}]
chr11	GH11I019071	19071132	19071654	1.13	[{'connected_gene': 'MRGPRX2', 'score': 550.77}, {'connected_gene': 'GC11P019071', 'score': 550.77}, {'connected_gene': 'ZDHHC13', 'score': 10.97}, {'connected_gene': 'LOC100420121', 'score': 0.26}]
chr11	GH11I019059	19059948	19060147	0.22	[{'connected_gene': 'MRGPRX2', 'score': 12.08}, {'connected_gene': 'ZDHHC13', 'score': 5.9}, {'connected_gene': 'LOC100420121', 'score': 0.31}]
chr11	GH11I019074	19073634	19073777	0.38	[{'connected_gene': 'MRGPRX2', 'score': 550.77}, {'connected_gene': 'GC11P019071', 'score': 550.77}, {'connected_gene': 'ZDHHC13', 'score': 10.91}]
chr11	GH11I019072	19072086	19073525	0.56	[{'connected_gene': 'MRGPRX2', 'score': 550.77}, {'connected_gene': 'GC11P019071', 'score': 550.77}, {'connected_gene': 'ZDHHC13', 'score': 11.48}, {'connected_gene': 'ENSG00000255308', 'score': 10.38}]
chr11	GH11I019187	19187954	19188083	0.66	[{'connected_gene': 'GC11P019191', 'score': 0.77}, {'connected_gene': 'CSRP3', 'score': 0.34}, {'connected_gene': 'ZDHHC13', 'score': 0.19}]
chr11	GH11I019220	19220814	19222368	0.71	[{'connected_gene': 'ENSG00000255308', 'score': 11.42}, {'connected_gene': 'ZDHHC13', 'score': 9.96}, {'connected_gene': 'CSRP3', 'score': 0.39}, {'connected_gene': 'E2F8', 'score': 0.34}]
chr11	GH11I019224	19224564	19226331	0.38	[{'connected_gene': 'ENSG00000255308', 'score': 11.39}, {'connected_gene': 'ZDHHC13', 'score': 10.23}, {'connected_gene': 'E2F8', 'score': 6.3}, {'connected_gene': 'CSRP3', 'score': 0.39}]
chr11	GH11I019168	19168525	19169116	0.2	[{'connected_gene': 'ENSG00000255308', 'score': 11.6}, {'connected_gene': 'GC11P019191', 'score': 0.34}, {'connected_gene': 'ZDHHC13', 'score': 0.23}]
chr11	GH11I019169	19169542	19170095	0.2	[{'connected_gene': 'ENSG00000255308', 'score': 11.6}, {'connected_gene': 'GC11P019191', 'score': 0.34}, {'connected_gene': 'ZDHHC13', 'score': 0.23}]
chr11	GH11I019191	19191309	19192375	0.79	[{'connected_gene': 'GC11P019191', 'score': 550.77}, {'connected_gene': 'LOC105376579', 'score': 6.55}, {'connected_gene': 'CSRP3', 'score': 0.37}, {'connected_gene': 'ZDHHC13', 'score': 0.19}]