PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368790	[[152486977, 152487028], [152487837, 152488486]]	[[152487859, 152488159]]
NM_019060	[[152486977, 152487028], [152487837, 152488481]]	[[152487859, 152488159]]

Promoter

Chrom	Start	End	Description
chr1	152486950	152486964	CAGE_peak_1_at_CRCT1_5end
chr1	152487905	152487915	CAGE_peak_5_at_CRCT1_5end
chr1	152487916	152487926	CAGE_peak_2_at_CRCT1_5end
chr1	152487957	152487969	CAGE_peak_3_at_CRCT1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I152459	152459582	152461024	0.95	[{'connected_gene': 'CRCT1', 'score': 10.36}, {'connected_gene': 'LCE5A', 'score': 10.27}, {'connected_gene': 'S100A11', 'score': 10.06}, {'connected_gene': 'RPTN', 'score': 9.31}, {'connected_gene': 'CRNN', 'score': 6.08}, {'connected_gene': 'PIR42758', 'score': 0.28}]
chr1	GH01I152461	152461685	152461834	0.66	[{'connected_gene': 'CRCT1', 'score': 10.36}, {'connected_gene': 'LCE5A', 'score': 10.29}, {'connected_gene': 'S100A11', 'score': 10.06}, {'connected_gene': 'RPTN', 'score': 9.31}, {'connected_gene': 'PIR42758', 'score': 0.26}]
chr1	GH01I152514	152514433	152514492	0.61	[{'connected_gene': 'CRCT1', 'score': 550.77}, {'connected_gene': 'LCE5A', 'score': 0.77}]
chr1	GH01I152458	152458505	152458654	0.64	[{'connected_gene': 'FLG2', 'score': 10.08}, {'connected_gene': 'CRCT1', 'score': 9.9}, {'connected_gene': 'RPTN', 'score': 9.34}, {'connected_gene': 'PIR42758', 'score': 0.28}, {'connected_gene': 'LCE5A', 'score': 0.23}]
chr1	GH01I152480	152480185	152480334	0.38	[{'connected_gene': 'LCE5A', 'score': 11.15}, {'connected_gene': 'CRCT1', 'score': 11.14}, {'connected_gene': 'LCE3A', 'score': 10.03}, {'connected_gene': 'LCE3D', 'score': 9.88}, {'connected_gene': 'HRNR', 'score': 9.57}, {'connected_gene': 'CRNN', 'score': 5.86}, {'connected_gene': 'PIR42758', 'score': 0.22}]