PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000498273	[[62660502, 62660593], [62662106, 62662200], [62672190, 62673308], [62675454, 62678000]]	[[62672300, 62673308], [62675454, 62677044]]
NM_019079	[[62660473, 62660593], [62662106, 62662200], [62672190, 62673308], [62675454, 62678000]]	[[62672300, 62673308], [62675454, 62677044]]
NM_001164835	[[62660473, 62660593], [62662106, 62662200], [62669118, 62669229], [62672190, 62673308], [62675454, 62678000]]	[[62672300, 62673308], [62675454, 62677044]]

Promoter

Chrom	Start	End	Description
chr1	62660375	62660393	CAGE_peak_4_at_L1TD1_5end
chr1	62660484	62660495	CAGE_peak_3_at_L1TD1_5end
chr1	62660501	62660564	CAGE_peak_1_at_L1TD1_5end
chr1	62672541	62672554	CAGE_peak_2_at_L1TD1_5end
chr1	62672658	62672669	CAGE_peak_5_at_L1TD1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I062762	62760751	62761587	0.46	[{'connected_gene': 'ATG4C', 'score': 22.03}, {'connected_gene': 'L1TD1', 'score': 4.82}, {'connected_gene': 'ENSG00000235545', 'score': 0.19}]
chr1	GH01I062295	62295489	62296762	0.74	[{'connected_gene': 'TM2D1', 'score': 5.38}, {'connected_gene': 'L1TD1', 'score': 4.87}, {'connected_gene': 'GC01M062299', 'score': 0.77}, {'connected_gene': 'KANK4', 'score': 0.34}, {'connected_gene': 'GC01M062237', 'score': 0.22}]
chr1	GH01I061966	61966167	61967578	0.77	[{'connected_gene': 'USP1', 'score': 12.65}, {'connected_gene': 'ENSG00000270742', 'score': 12.61}, {'connected_gene': 'L1TD1', 'score': 4.67}, {'connected_gene': 'PATJ', 'score': 4.47}, {'connected_gene': 'GC01P061916', 'score': 0.23}, {'connected_gene': 'LAMTOR5P1', 'score': 0.19}]
chr1	GH01I062232	62232859	62233058	0.56	[{'connected_gene': 'USP1', 'score': 16.97}, {'connected_gene': 'KANK4', 'score': 14.75}, {'connected_gene': 'L1TD1', 'score': 4.19}, {'connected_gene': 'GC01M062237', 'score': 0.44}, {'connected_gene': 'GC01P062219', 'score': 0.39}]
chr1	GH01I062179	62179926	62184183	0.8	[{'connected_gene': 'L1TD1', 'score': 23.81}, {'connected_gene': 'KANK4', 'score': 11.45}, {'connected_gene': 'PATJ', 'score': 10.22}, {'connected_gene': 'PIGPP2', 'score': 0.44}, {'connected_gene': 'GC01P062128', 'score': 0.23}]
chr1	GH01I062307	62307577	62309047	0.75	[{'connected_gene': 'L1TD1', 'score': 4.47}, {'connected_gene': 'RNU6-371P', 'score': 0.39}, {'connected_gene': 'KANK4', 'score': 0.39}]
chr1	GH01I062175	62175689	62175898	0.59	[{'connected_gene': 'L1TD1', 'score': 5.12}, {'connected_gene': 'PIGPP2', 'score': 0.39}, {'connected_gene': 'GC01P062128', 'score': 0.25}, {'connected_gene': 'PATJ', 'score': 0.04}]
chr1	GH01I062176	62176388	62178135	0.58	[{'connected_gene': 'L1TD1', 'score': 22.74}, {'connected_gene': 'PATJ', 'score': 5.65}, {'connected_gene': 'PIGPP2', 'score': 0.39}, {'connected_gene': 'GC01P062128', 'score': 0.25}]
chr1	GH01I062194	62194129	62199925	1.76	[{'connected_gene': 'L1TD1', 'score': 587.38}, {'connected_gene': 'GC01P062196', 'score': 550.77}, {'connected_gene': 'PATJ', 'score': 10.4}, {'connected_gene': 'GC01P062201', 'score': 0.77}]
chr1	GH01I062233	62233109	62233258	0.43	[{'connected_gene': 'L1TD1', 'score': 5.63}, {'connected_gene': 'GC01M062237', 'score': 0.44}, {'connected_gene': 'GC01P062219', 'score': 0.39}]
chr1	GH01I062228	62228275	62231835	1.04	[{'connected_gene': 'L1TD1', 'score': 6.93}, {'connected_gene': 'GC01M062237', 'score': 0.44}, {'connected_gene': 'GC01P062219', 'score': 0.39}]
chr1	GH01I062285	62285935	62287261	0.98	[{'connected_gene': 'KANK4', 'score': 12.16}, {'connected_gene': 'L1TD1', 'score': 6.24}, {'connected_gene': 'GC01M062299', 'score': 0.39}, {'connected_gene': 'GC01M062237', 'score': 0.25}]
chr1	GH01I062288	62288369	62288518	0.46	[{'connected_gene': 'KANK4', 'score': 12.16}, {'connected_gene': 'L1TD1', 'score': 6.05}, {'connected_gene': 'GC01M062299', 'score': 0.44}, {'connected_gene': 'GC01M062237', 'score': 0.25}]
chr1	GH01I062271	62271579	62272835	0.74	[{'connected_gene': 'KANK4', 'score': 17.71}, {'connected_gene': 'RNU6-371P', 'score': 12.05}, {'connected_gene': 'L1TD1', 'score': 5.02}, {'connected_gene': 'GC01M062299', 'score': 0.31}, {'connected_gene': 'GC01M062237', 'score': 0.29}]
chr1	GH01I062263	62263270	62263581	0.31	[{'connected_gene': 'RNU6-371P', 'score': 12.09}, {'connected_gene': 'KANK4', 'score': 11.78}, {'connected_gene': 'L1TD1', 'score': 5.59}, {'connected_gene': 'GC01M062237', 'score': 0.34}, {'connected_gene': 'GC01M062299', 'score': 0.29}]
chr1	GH01I062274	62274110	62275490	0.2	[{'connected_gene': 'RNU6-371P', 'score': 12.08}, {'connected_gene': 'KANK4', 'score': 11.61}, {'connected_gene': 'L1TD1', 'score': 6.14}, {'connected_gene': 'GC01M062299', 'score': 0.34}, {'connected_gene': 'GC01M062237', 'score': 0.28}]
chr1	GH01I062298	62298899	62300886	0.67	[{'connected_gene': 'RNU6-371P', 'score': 550.77}, {'connected_gene': 'GC01M062299', 'score': 550.77}, {'connected_gene': 'KANK4', 'score': 6.73}, {'connected_gene': 'L1TD1', 'score': 5.87}]
chr1	GH01I062040	62040569	62041568	0.57	[{'connected_gene': 'PATJ', 'score': 10.6}, {'connected_gene': 'L1TD1', 'score': 4.43}, {'connected_gene': 'LAMTOR5P1', 'score': 0.77}, {'connected_gene': 'RN7SL180P', 'score': 0.29}]
chr1	GH01I062236	62236929	62238318	0.89	[{'connected_gene': 'GC01M062237', 'score': 550.77}, {'connected_gene': 'L1TD1', 'score': 5.73}, {'connected_gene': 'GC01P062219', 'score': 0.37}, {'connected_gene': 'KANK4', 'score': 0.18}]
chr1	GH01I062213	62213221	62213478	0.31	[{'connected_gene': 'ENSG00000200174', 'score': 550.77}, {'connected_gene': 'GC01P062212', 'score': 550.77}, {'connected_gene': 'L1TD1', 'score': 10.89}, {'connected_gene': 'GC01P062219', 'score': 0.44}]
chr1	GH01I062202	62202412	62203153	0.31	[{'connected_gene': 'GC01P062201', 'score': 550.77}, {'connected_gene': 'PATJ', 'score': 10.4}, {'connected_gene': 'L1TD1', 'score': 7.13}, {'connected_gene': 'ENSG00000237227', 'score': 0.44}]