PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000511880	[[76781019, 76782073], [76785592, 76785680], [76787341, 76787672], [76788465, 76788572], [76793177, 76793320], [76794279, 76794465], [76797439, 76797826], [76802483, 76803138], [76804078, 76804228], [76804318, 76804355], [76805746, 76805913], [76808004, 76808051], [76809366, 76809484], [76811109, 76811285], [76812800, 76812858], [76813003, 76813131], [76817423, 76817557], [76823382, 76823576]]	[[76809481, 76809484], [76811109, 76811285], [76812800, 76812858], [76813003, 76813131], [76817423, 76817478]]
ENST00000286719	[[76781024, 76782073], [76785592, 76785680], [76787341, 76787505], [76788465, 76788572], [76793177, 76793320], [76794279, 76794465], [76797439, 76797826], [76804078, 76804228], [76804318, 76804355], [76805746, 76805913], [76808004, 76808051], [76809366, 76809481], [76811109, 76811285], [76812800, 76812858], [76813003, 76813131], [76817423, 76817536], [76823382, 76823681]]	[[76781819, 76782073], [76785592, 76785680], [76787341, 76787505], [76788465, 76788572], [76793177, 76793320], [76794279, 76794465], [76797439, 76797826], [76804078, 76804228], [76804318, 76804355], [76805746, 76805913], [76808004, 76808051], [76809366, 76809481], [76811109, 76811285], [76812800, 76812858], [76813003, 76813131], [76817423, 76817478]]
ENST00000513324	[[76803905, 76804228], [76804318, 76804355], [76805746, 76805976]]	None
ENST00000515552	[[76804101, 76804228], [76804318, 76804685]]	None
ENST00000503352	[[76809453, 76809484], [76810255, 76810357], [76811109, 76811195]]	None
ENST00000510607	[[76813086, 76813131], [76817423, 76817557], [76823382, 76823724]]	None
NM_006239	[[76781024, 76782073], [76785592, 76785680], [76787341, 76787505], [76788465, 76788572], [76793177, 76793320], [76794279, 76794465], [76797439, 76797826], [76804078, 76804228], [76804318, 76804355], [76805746, 76805913], [76808004, 76808051], [76809366, 76809481], [76811109, 76811285], [76812800, 76812858], [76813003, 76813131], [76817423, 76817536], [76823382, 76823681]]	[[76781819, 76782073], [76785592, 76785680], [76787341, 76787505], [76788465, 76788572], [76793177, 76793320], [76794279, 76794465], [76797439, 76797826], [76804078, 76804228], [76804318, 76804355], [76805746, 76805913], [76808004, 76808051], [76809366, 76809481], [76811109, 76811285], [76812800, 76812858], [76813003, 76813131], [76817423, 76817478]]

Promoter

Chrom	Start	End	Description
chr4	76823577	76823588	CAGE_peak_3_at_PPEF2_5end
chr4	76823597	76823623	CAGE_peak_1_at_PPEF2_5end
chr4	76823718	76823737	CAGE_peak_2_at_PPEF2_5end
chr4	76823743	76823756	CAGE_peak_4_at_PPEF2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I075901	75901332	75902002	1.04	[{'connected_gene': 'PPEF2', 'score': 550.77}, {'connected_gene': 'NAAA', 'score': 30.92}, {'connected_gene': 'CXCL10', 'score': 3.55}, {'connected_gene': 'CXCL9', 'score': 3.17}, {'connected_gene': 'CXCL11', 'score': 2.78}, {'connected_gene': 'THAP6', 'score': 1.46}, {'connected_gene': 'RCHY1', 'score': 1.45}, {'connected_gene': 'LOC105377285', 'score': 0.34}]
chr4	GH04I075860	75860261	75861600	0.46	[{'connected_gene': 'PPEF2', 'score': 12.01}, {'connected_gene': 'RNU2-16P', 'score': 11.33}, {'connected_gene': 'LOC105377284', 'score': 11.32}, {'connected_gene': 'CDKL2', 'score': 9.54}, {'connected_gene': 'LOC105377285', 'score': 0.37}, {'connected_gene': 'GC04P075831', 'score': 0.29}]
chr4	GH04I075902	75902442	75902501	0.5	[{'connected_gene': 'PPEF2', 'score': 550.77}, {'connected_gene': 'LOC105377285', 'score': 0.34}]
chr4	GH04I075916	75916200	75916640	0.84	[{'connected_gene': 'CXCL9', 'score': 10.01}, {'connected_gene': 'ART3', 'score': 10.01}, {'connected_gene': 'PPEF2', 'score': 0.39}, {'connected_gene': 'PIR50646', 'score': 0.34}, {'connected_gene': 'NAAA', 'score': 0.34}, {'connected_gene': 'GC04M075942', 'score': 0.34}]
chr4	GH04I075909	75909307	75909868	0.31	[{'connected_gene': 'CXCL9', 'score': 10.46}, {'connected_gene': 'ART3', 'score': 9.81}, {'connected_gene': 'PPEF2', 'score': 8.68}, {'connected_gene': 'PIR50646', 'score': 0.29}, {'connected_gene': 'GC04M075942', 'score': 0.29}]
chr4	GH04I076072	76072307	76073694	0.38	[{'connected_gene': 'ART3', 'score': 21.34}, {'connected_gene': 'CXCL9', 'score': 11.43}, {'connected_gene': 'SDAD1', 'score': 11.01}, {'connected_gene': 'CXCL10', 'score': 11.0}, {'connected_gene': 'LOC101928809', 'score': 11.0}, {'connected_gene': 'PPEF2', 'score': 10.5}, {'connected_gene': 'GC04P076101', 'score': 0.31}, {'connected_gene': 'CXCL11', 'score': 0.29}]
chr4	GH04I076074	76074664	76074723	0.5	[{'connected_gene': 'ART3', 'score': 561.44}, {'connected_gene': 'CXCL9', 'score': 11.43}, {'connected_gene': 'SDAD1', 'score': 11.01}, {'connected_gene': 'LOC101928809', 'score': 11.0}, {'connected_gene': 'CXCL10', 'score': 10.98}, {'connected_gene': 'PPEF2', 'score': 10.5}, {'connected_gene': 'GC04P076101', 'score': 0.31}, {'connected_gene': 'CXCL11', 'score': 0.29}]
chr4	GH04I075939	75939435	75941580	1.92	[{'connected_gene': 'NAAA', 'score': 614.34}, {'connected_gene': 'GC04M075942', 'score': 550.77}, {'connected_gene': 'PIR50646', 'score': 550.77}, {'connected_gene': 'PPEF2', 'score': 12.19}, {'connected_gene': 'SCARB2', 'score': 8.36}, {'connected_gene': 'ART3', 'score': 7.28}, {'connected_gene': 'SDAD1', 'score': 0.23}, {'connected_gene': 'GC04M075923', 'score': 0.17}]
chr4	GH04I075847	75847548	75847697	0.46	[{'connected_gene': 'THAP6', 'score': 12.55}, {'connected_gene': 'LOC105377284', 'score': 12.54}, {'connected_gene': 'PPEF2', 'score': 11.3}, {'connected_gene': 'RCHY1', 'score': 11.22}, {'connected_gene': 'SDAD1', 'score': 10.73}, {'connected_gene': 'GC04P075831', 'score': 0.37}, {'connected_gene': 'LOC105377285', 'score': 0.29}]
chr4	GH04I075849	75849601	75849800	0.58	[{'connected_gene': 'RNU2-16P', 'score': 12.54}, {'connected_gene': 'LOC105377284', 'score': 12.51}, {'connected_gene': 'PPEF2', 'score': 11.3}, {'connected_gene': 'GC04P075831', 'score': 0.37}, {'connected_gene': 'LOC105377285', 'score': 0.31}]
chr4	GH04I075885	75885988	75886677	0.2	[{'connected_gene': 'LOC105377285', 'score': 0.44}, {'connected_gene': 'PPEF2', 'score': 0.37}]
chr4	GH04I075848	75848002	75849295	1.03	[{'connected_gene': 'LOC105377284', 'score': 12.51}, {'connected_gene': 'PPEF2', 'score': 11.3}, {'connected_gene': 'GC04P075831', 'score': 0.37}, {'connected_gene': 'LOC105377285', 'score': 0.31}]