PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000296318	[[57124009, 57130533], [57131623, 57132566], [57135206, 57135391], [57136506, 57136617], [57137118, 57137173], [57138369, 57138435], [57139884, 57140036], [57140137, 57140182], [57143564, 57143685], [57144220, 57144339], [57148719, 57148845], [57154283, 57154341], [57199188, 57199403]]	[[57130420, 57130533], [57131623, 57132566], [57135206, 57135391], [57136506, 57136617], [57137118, 57137173], [57138369, 57138435], [57139884, 57140036], [57140137, 57140182], [57143564, 57143685], [57144220, 57144339], [57148719, 57148845], [57154283, 57154341], [57199188, 57199314]]
ENST00000427856	[[57128277, 57130533], [57131623, 57132566], [57135206, 57135391], [57136506, 57136617], [57137118, 57137173], [57138369, 57138435], [57139884, 57140036], [57140137, 57140182], [57143564, 57143685], [57144220, 57144339], [57148719, 57148845], [57154283, 57154341], [57176480, 57176534]]	[[57130420, 57130533], [57131623, 57132566], [57135206, 57135391], [57136506, 57136617], [57137118, 57137173], [57138369, 57138435], [57139884, 57140036], [57140137, 57140182], [57143564, 57143685], [57144220, 57144339], [57148719, 57148845], [57154283, 57154341], [57176480, 57176534]]
ENST00000320057	[[57128277, 57130533], [57131623, 57132566], [57135206, 57135391], [57136506, 57136617], [57137118, 57137173], [57138369, 57138435], [57139884, 57140036], [57140137, 57140182], [57143564, 57143685], [57144220, 57144339], [57148719, 57148845], [57154283, 57154341], [57203259, 57203422], [57204260, 57204334]]	[[57130420, 57130533], [57131623, 57132566], [57135206, 57135391], [57136506, 57136617], [57137118, 57137173], [57138369, 57138435], [57139884, 57140036], [57140137, 57140182], [57143564, 57143682]]
ENST00000463523	[[57130205, 57130533], [57131623, 57132566], [57135206, 57135391], [57136506, 57136617], [57137118, 57137173], [57138369, 57138435], [57139884, 57140036], [57140137, 57140182], [57143564, 57143685], [57144220, 57144339], [57148719, 57148845], [57154283, 57154341], [57176480, 57176519]]	[[57130420, 57130533], [57131623, 57132566], [57135206, 57135391], [57136506, 57136617], [57137118, 57137173], [57138369, 57138435], [57139884, 57140036], [57140137, 57140182], [57143564, 57143682]]
ENST00000469841	[[57131500, 57132566], [57135206, 57135391], [57136506, 57136617], [57137118, 57137173], [57138369, 57138435], [57139884, 57140036], [57140137, 57140182], [57143564, 57143685], [57144220, 57144339], [57148719, 57148845], [57154283, 57154341], [57204260, 57204323]]	None
ENST00000467210	[[57139979, 57140036], [57140137, 57140182], [57143564, 57143685], [57144220, 57144339], [57148719, 57148845], [57154283, 57154341], [57204260, 57204323]]	[[57139979, 57140036], [57140137, 57140182], [57143564, 57143682]]
ENST00000479825	[[57148768, 57148845], [57154283, 57154341], [57198953, 57199403]]	None
ENST00000498471	[[57184317, 57184524], [57198953, 57199206]]	None
NM_017563	[[57124009, 57130533], [57131623, 57132566], [57135206, 57135391], [57136506, 57136617], [57137118, 57137173], [57138369, 57138435], [57139884, 57140036], [57140137, 57140182], [57143564, 57143685], [57144220, 57144339], [57148719, 57148845], [57154283, 57154341], [57199188, 57199427]]	[[57130420, 57130533], [57131623, 57132566], [57135206, 57135391], [57136506, 57136617], [57137118, 57137173], [57138369, 57138435], [57139884, 57140036], [57140137, 57140182], [57143564, 57143685], [57144220, 57144339], [57148719, 57148845], [57154283, 57154341], [57199188, 57199314]]
NM_001318864	[[57124009, 57130533], [57131623, 57132566], [57135206, 57135391], [57136506, 57136617], [57137118, 57137173], [57138369, 57138435], [57139884, 57140036], [57140137, 57140182], [57143564, 57143685], [57144220, 57144339], [57148719, 57148845], [57154283, 57154341], [57203259, 57203422], [57204260, 57204345]]	[[57130420, 57130533], [57131623, 57132566], [57135206, 57135391], [57136506, 57136617], [57137118, 57137173], [57138369, 57138435], [57139884, 57140036], [57140137, 57140182], [57143564, 57143682]]

Promoter

Chrom	Start	End	Description
chr3	57199333	57199352	CAGE_peak_2_at_IL17RD_5end
chr3	57199361	57199393	CAGE_peak_1_at_IL17RD_5end
chr3	57199397	57199432	CAGE_peak_3_at_IL17RD_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I057199	57199802	57200582	1.06	[{'connected_gene': 'HESX1', 'score': 561.98}, {'connected_gene': 'GC03P057200', 'score': 550.77}, {'connected_gene': 'APPL1', 'score': 11.98}, {'connected_gene': 'IL17RD', 'score': 11.04}, {'connected_gene': 'PDE12', 'score': 10.41}, {'connected_gene': 'ASB14', 'score': 10.36}, {'connected_gene': 'DNAH12', 'score': 10.25}, {'connected_gene': 'ARHGEF3', 'score': 9.59}, {'connected_gene': 'GC03M057226', 'score': 0.31}]
chr3	GH03I057793	57793601	57794200	1.29	[{'connected_gene': 'SLMAP', 'score': 6.48}, {'connected_gene': 'IL17RD', 'score': 4.49}, {'connected_gene': 'DENND6A', 'score': 3.1}, {'connected_gene': 'PDHA1P1', 'score': 0.44}]
chr3	GH03I057754	57754899	57759201	2.27	[{'connected_gene': 'SLMAP', 'score': 550.77}, {'connected_gene': 'DENND6A-DT', 'score': 11.46}, {'connected_gene': 'DENND6A', 'score': 11.46}, {'connected_gene': 'IL17RD', 'score': 5.76}, {'connected_gene': 'PDE12', 'score': 5.06}, {'connected_gene': 'DNAH12', 'score': 4.97}, {'connected_gene': 'ARF4', 'score': 4.96}, {'connected_gene': 'ENSG00000272202', 'score': 4.09}, {'connected_gene': 'GC03P057753', 'score': 0.77}, {'connected_gene': 'PDHA1P1', 'score': 0.26}]
chr3	GH03I057141	57141817	57143921	0.72	[{'connected_gene': 'IL17RD', 'score': 20.24}, {'connected_gene': 'SLMAP', 'score': 4.09}, {'connected_gene': 'RPL19P2', 'score': 0.44}, {'connected_gene': 'LOC105377101', 'score': 0.39}]
chr3	GH03I057126	57126159	57126753	0.38	[{'connected_gene': 'IL17RD', 'score': 11.92}, {'connected_gene': 'ARHGEF3', 'score': 10.85}, {'connected_gene': 'RPL19P2', 'score': 0.44}, {'connected_gene': 'PIR43010', 'score': 0.31}]
chr3	GH03I057067	57067824	57070497	1.31	[{'connected_gene': 'IL17RD', 'score': 5.03}, {'connected_gene': 'ARHGEF3', 'score': 1.78}, {'connected_gene': 'ENSG00000272202', 'score': 0.44}, {'connected_gene': 'SPATA12', 'score': 0.44}]
chr3	GH03I057127	57127428	57132788	1.03	[{'connected_gene': 'IL17RD', 'score': 20.0}, {'connected_gene': 'ARHGEF3', 'score': 10.83}, {'connected_gene': 'APPL1', 'score': 10.6}, {'connected_gene': 'HESX1', 'score': 10.6}, {'connected_gene': 'ASB14', 'score': 9.5}, {'connected_gene': 'DNAH12', 'score': 9.45}, {'connected_gene': 'SLMAP', 'score': 4.02}, {'connected_gene': 'RPL19P2', 'score': 0.77}, {'connected_gene': 'PIR43010', 'score': 0.29}]
chr3	GH03I057162	57162857	57165800	2.13	[{'connected_gene': 'IL17RD', 'score': 556.18}, {'connected_gene': 'APPL1', 'score': 10.62}, {'connected_gene': 'HESX1', 'score': 10.62}, {'connected_gene': 'SLMAP', 'score': 4.03}, {'connected_gene': 'LOC105377101', 'score': 0.39}]
chr3	GH03I057169	57169801	57170601	1.36	[{'connected_gene': 'IL17RD', 'score': 550.77}, {'connected_gene': 'APPL1', 'score': 16.79}, {'connected_gene': 'HESX1', 'score': 11.04}, {'connected_gene': 'PDE12', 'score': 10.36}, {'connected_gene': 'ASB14', 'score': 9.91}, {'connected_gene': 'DNAH12', 'score': 9.84}, {'connected_gene': 'DENND6A-DT', 'score': 9.47}, {'connected_gene': 'DENND6A', 'score': 9.47}, {'connected_gene': 'SLMAP', 'score': 4.1}, {'connected_gene': 'LOC105377101', 'score': 0.37}]
chr3	GH03I057100	57100213	57100362	0.83	[{'connected_gene': 'ARHGEF3', 'score': 15.73}, {'connected_gene': 'SPATA12', 'score': 11.67}, {'connected_gene': 'IL17RD', 'score': 11.06}, {'connected_gene': 'APPL1', 'score': 10.41}, {'connected_gene': 'HESX1', 'score': 10.41}, {'connected_gene': 'PIR43010', 'score': 0.77}, {'connected_gene': 'RPL19P2', 'score': 0.29}]
chr3	GH03I057110	57110720	57111534	0.49	[{'connected_gene': 'ARHGEF3', 'score': 11.6}, {'connected_gene': 'SPATA12', 'score': 11.2}, {'connected_gene': 'PDE12', 'score': 10.4}, {'connected_gene': 'APPL1', 'score': 10.17}, {'connected_gene': 'HESX1', 'score': 10.17}, {'connected_gene': 'ASB14', 'score': 10.07}, {'connected_gene': 'DNAH12', 'score': 10.03}, {'connected_gene': 'PIR43010', 'score': 0.39}, {'connected_gene': 'RPL19P2', 'score': 0.34}, {'connected_gene': 'IL17RD', 'score': 0.22}]
chr3	GH03I057594	57594549	57600593	2.3	[{'connected_gene': 'ARF4', 'score': 565.34}, {'connected_gene': 'GC03P057599', 'score': 550.77}, {'connected_gene': 'ARF4-AS1', 'score': 550.77}, {'connected_gene': 'DENND6A', 'score': 23.78}, {'connected_gene': 'FAM208A', 'score': 20.42}, {'connected_gene': 'DENND6A-AS1', 'score': 11.53}, {'connected_gene': 'PDE12', 'score': 11.29}, {'connected_gene': 'DENND6A-DT', 'score': 10.73}, {'connected_gene': 'APPL1', 'score': 9.85}, {'connected_gene': 'HESX1', 'score': 9.85}, {'connected_gene': 'FLNB', 'score': 9.84}, {'connected_gene': 'DNAH12', 'score': 5.55}, {'connected_gene': 'ABHD6', 'score': 5.46}, {'connected_gene': 'IL17RD', 'score': 4.7}]
chr3	GH03I057090	57090882	57092395	0.2	[{'connected_gene': 'SPATA12', 'score': 11.76}, {'connected_gene': 'ASB14', 'score': 9.93}, {'connected_gene': 'DNAH12', 'score': 9.9}, {'connected_gene': 'IL17RD', 'score': 7.5}, {'connected_gene': 'PIR55494', 'score': 0.77}, {'connected_gene': 'GC03M057078', 'score': 0.39}]
chr3	GH03I057158	57158551	57162597	1.1	[{'connected_gene': 'CCDC66', 'score': 15.47}, {'connected_gene': 'FAM208A', 'score': 11.79}, {'connected_gene': 'IL17RD', 'score': 11.42}, {'connected_gene': 'APPL1', 'score': 10.61}, {'connected_gene': 'HESX1', 'score': 10.61}, {'connected_gene': 'ASB14', 'score': 10.26}, {'connected_gene': 'DNAH12', 'score': 10.19}, {'connected_gene': 'SLMAP', 'score': 4.02}, {'connected_gene': 'LOC105377101', 'score': 0.44}]
chr3	GH03I057196	57196401	57197599	0.62	[{'connected_gene': 'APPL1', 'score': 18.9}, {'connected_gene': 'HESX1', 'score': 11.96}, {'connected_gene': 'IL17RD', 'score': 11.04}, {'connected_gene': 'PDE12', 'score': 10.41}, {'connected_gene': 'ASB14', 'score': 10.35}, {'connected_gene': 'DNAH12', 'score': 10.25}, {'connected_gene': 'ARHGEF3', 'score': 9.59}, {'connected_gene': 'GC03P057200', 'score': 0.77}, {'connected_gene': 'GC03P057176', 'score': 0.34}]
chr3	GH03I057154	57154240	57155740	0.38	[{'connected_gene': 'LOC105377101', 'score': 550.77}, {'connected_gene': 'IL17RD', 'score': 11.25}, {'connected_gene': 'ARHGEF3', 'score': 10.66}, {'connected_gene': 'APPL1', 'score': 10.5}, {'connected_gene': 'HESX1', 'score': 10.5}, {'connected_gene': 'ASB14', 'score': 9.9}, {'connected_gene': 'DNAH12', 'score': 9.83}, {'connected_gene': 'SLMAP', 'score': 4.01}]
chr3	GH03I057149	57149786	57154203	1.03	[{'connected_gene': 'LOC105377101', 'score': 550.77}, {'connected_gene': 'IL17RD', 'score': 11.23}, {'connected_gene': 'APPL1', 'score': 10.89}, {'connected_gene': 'HESX1', 'score': 10.89}, {'connected_gene': 'ARHGEF3', 'score': 10.67}, {'connected_gene': 'ASB14', 'score': 9.89}, {'connected_gene': 'DNAH12', 'score': 9.83}, {'connected_gene': 'SLMAP', 'score': 4.01}, {'connected_gene': 'RPL19P2', 'score': 0.37}]
chr3	GH03I057690	57690654	57694437	2.04	[{'connected_gene': 'DENND6A-DT', 'score': 550.77}, {'connected_gene': 'DENND6A', 'score': 550.77}, {'connected_gene': 'ARF4', 'score': 14.72}, {'connected_gene': 'IL17RD', 'score': 4.97}, {'connected_gene': 'ACOX2', 'score': 4.86}, {'connected_gene': 'SLMAP', 'score': 4.86}, {'connected_gene': 'DENND6A-AS1', 'score': 0.21}]
chr3	GH03I057093	57093093	57096379	0.63	[{'connected_gene': 'PIR55494', 'score': 550.77}, {'connected_gene': 'SPATA12', 'score': 11.43}, {'connected_gene': 'APPL1', 'score': 10.02}, {'connected_gene': 'HESX1', 'score': 10.02}, {'connected_gene': 'ASB14', 'score': 9.93}, {'connected_gene': 'DNAH12', 'score': 9.9}, {'connected_gene': 'DENND6A-DT', 'score': 9.35}, {'connected_gene': 'DENND6A', 'score': 9.35}, {'connected_gene': 'GC03M057078', 'score': 0.39}, {'connected_gene': 'IL17RD', 'score': 0.18}]