PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369023	[[123716602, 123716774], [123718838, 123718925], [123719015, 123719110], [123719872, 123719921], [123720937, 123721032], [123722752, 123722843], [123724800, 123724900], [123727169, 123727321], [123730453, 123730584], [123733518, 123733596], [123734388, 123734732]]	[[123718850, 123718925], [123719015, 123719110], [123719872, 123719921], [123720937, 123721032], [123722752, 123722843], [123724800, 123724900], [123727169, 123727321], [123730453, 123730584], [123733518, 123733596], [123734388, 123734680]]
ENST00000489266	[[123716655, 123716774], [123718838, 123718925], [123719015, 123719110], [123719872, 123719921], [123720937, 123721032], [123721355, 123721622], [123722752, 123722843], [123724800, 123724900], [123727169, 123727321], [123730453, 123730584], [123733518, 123734731]]	None
ENST00000468209	[[123718879, 123718925], [123719015, 123719110], [123719872, 123719921], [123720937, 123721032], [123722752, 123722843], [123724800, 123724900], [123727169, 123727321], [123730453, 123730584], [123733518, 123733800]]	None
ENST00000538652	[[123719612, 123719921], [123720937, 123721032], [123722752, 123722843], [123724800, 123724900], [123727169, 123727321], [123730453, 123730584], [123733518, 123733596], [123733820, 123734273]]	[[123719864, 123719921], [123720937, 123721032], [123722752, 123722843], [123724800, 123724900], [123727169, 123727321], [123730453, 123730477]]
ENST00000369017	[[123721271, 123721622], [123722752, 123722843], [123724800, 123724900], [123727169, 123727321], [123730453, 123730584], [123733518, 123733596], [123734388, 123734709]]	[[123721515, 123721622], [123722752, 123722843], [123724800, 123724900], [123727169, 123727321], [123730453, 123730584], [123733518, 123733596], [123734388, 123734680]]
ENST00000464321	[[123724857, 123724900], [123727169, 123727321], [123730453, 123730584], [123733518, 123733596], [123733904, 123734322]]	None
ENST00000481320	[[123726892, 123727321], [123730453, 123730584], [123733518, 123734303]]	None
ENST00000472431	[[123727160, 123727321], [123730453, 123730584], [123733518, 123733596], [123733820, 123734269]]	None
ENST00000465189	[[123727207, 123727321], [123730453, 123730530], [123734388, 123734637]]	None
ENST00000459911	[[123716605, 123716774], [123718838, 123718925], [123719015, 123719300]]	None
ENST00000477289	[[123716605, 123716774], [123718838, 123719312]]	None
ENST00000483541	[[123719432, 123719921], [123720937, 123721032], [123722752, 123722843], [123724800, 123724819]]	None
NM_017615	[[123716602, 123716774], [123718838, 123718925], [123719015, 123719110], [123719872, 123719921], [123720937, 123721032], [123722752, 123722843], [123724800, 123724900], [123727169, 123727321], [123730453, 123730584], [123733518, 123733596], [123734388, 123734743]]	[[123718850, 123718925], [123719015, 123719110], [123719872, 123719921], [123720937, 123721032], [123722752, 123722843], [123724800, 123724900], [123727169, 123727321], [123730453, 123730584], [123733518, 123733596], [123734388, 123734680]]
NM_001167865	[[123716602, 123716774], [123718838, 123718922], [123719015, 123719110], [123719872, 123719921], [123720937, 123721032], [123722752, 123722843], [123724800, 123724900], [123727169, 123727321], [123730453, 123730584], [123733518, 123733596], [123734388, 123734743]]	[[123718850, 123718922], [123719015, 123719110], [123719872, 123719921], [123720937, 123721032], [123722752, 123722843], [123724800, 123724900], [123727169, 123727321], [123730453, 123730584], [123733518, 123733596], [123734388, 123734680]]

Promoter

Chrom	Start	End	Description
chr10	123734683	123734738	CAGE_peak_1_at_NSMCE4A_5end
chr10	123734766	123734779	CAGE_peak_2_at_NSMCE4A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I121332	121332379	121334136	0.63	[{'connected_gene': 'WDR11', 'score': 34.68}, {'connected_gene': 'NSMCE4A', 'score': 11.67}, {'connected_gene': 'RPL21P16', 'score': 11.0}, {'connected_gene': 'ATE1-AS1', 'score': 10.65}, {'connected_gene': 'LOC105378523', 'score': 0.39}, {'connected_gene': 'GC10M121343', 'score': 0.34}]
chr10	GH10I121521	121521880	121522479	0.43	[{'connected_gene': 'WDR11', 'score': 17.03}, {'connected_gene': 'NSMCE4A', 'score': 11.69}, {'connected_gene': 'FGFR2', 'score': 10.57}, {'connected_gene': 'RN7SKP167', 'score': 0.14}]
chr10	GH10I121307	121307208	121310316	0.97	[{'connected_gene': 'WDR11', 'score': 46.47}, {'connected_gene': 'NSMCE4A', 'score': 11.77}, {'connected_gene': 'ATE1', 'score': 9.92}, {'connected_gene': 'LOC105378523', 'score': 0.39}, {'connected_gene': 'GC10M121233', 'score': 0.22}]
chr10	GH10I121497	121497119	121505197	0.91	[{'connected_gene': 'WDR11', 'score': 69.48}, {'connected_gene': 'NSMCE4A', 'score': 25.28}, {'connected_gene': 'RN7SKP167', 'score': 0.16}, {'connected_gene': 'FGFR2', 'score': 0.15}]
chr10	GH10I121095	121095834	121098521	0.76	[{'connected_gene': 'NSMCE4A', 'score': 5.04}, {'connected_gene': 'WDR11', 'score': 4.78}, {'connected_gene': 'LOC105378521', 'score': 0.37}, {'connected_gene': 'LOC105378522', 'score': 0.29}]
chr10	GH10I122126	122126182	122129062	1.16	[{'connected_gene': 'NSMCE4A', 'score': 12.39}, {'connected_gene': 'TACC2', 'score': 8.68}, {'connected_gene': 'GC10P122094', 'score': 0.29}, {'connected_gene': 'GC10M122162', 'score': 0.28}]
chr10	GH10I122138	122138534	122143872	1.56	[{'connected_gene': 'NSMCE4A', 'score': 11.84}, {'connected_gene': 'TACC2', 'score': 1.83}, {'connected_gene': 'GC10M122162', 'score': 0.34}, {'connected_gene': 'GC10P122094', 'score': 0.25}]
chr10	GH10I121983	121983446	121984685	0.49	[{'connected_gene': 'NSMCE4A', 'score': 13.97}, {'connected_gene': 'TACC2', 'score': 0.44}]
chr10	GH10I122035	122034286	122034475	0.72	[{'connected_gene': 'NSMCE4A', 'score': 6.22}, {'connected_gene': 'GC10M122037', 'score': 0.77}, {'connected_gene': 'PIR33240', 'score': 0.39}, {'connected_gene': 'TACC2', 'score': 0.25}]
chr10	GH10I122007	122007704	122008270	0.56	[{'connected_gene': 'NSMCE4A', 'score': 17.09}, {'connected_gene': 'ATE1-AS1', 'score': 13.35}, {'connected_gene': 'ATE1', 'score': 9.28}, {'connected_gene': 'PIR33240', 'score': 0.39}, {'connected_gene': 'TACC2', 'score': 0.37}]
chr10	GH10I121900	121900646	121900815	0.72	[{'connected_gene': 'NSMCE4A', 'score': 12.21}, {'connected_gene': 'ATE1-AS1', 'score': 11.79}, {'connected_gene': 'ATE1', 'score': 11.79}, {'connected_gene': 'GC10M121896', 'score': 0.44}, {'connected_gene': 'GC10M121895', 'score': 0.44}, {'connected_gene': 'GC10M121883', 'score': 0.39}]
chr10	GH10I122031	122031859	122032901	0.31	[{'connected_gene': 'NSMCE4A', 'score': 6.23}, {'connected_gene': 'ATE1-AS1', 'score': 4.79}, {'connected_gene': 'GC10M122037', 'score': 0.44}, {'connected_gene': 'PIR33240', 'score': 0.39}, {'connected_gene': 'TACC2', 'score': 0.26}]
chr10	GH10I122028	122028966	122031636	0.49	[{'connected_gene': 'NSMCE4A', 'score': 7.26}, {'connected_gene': 'ATE1-AS1', 'score': 6.49}, {'connected_gene': 'GC10M122037', 'score': 0.44}, {'connected_gene': 'PIR33240', 'score': 0.39}, {'connected_gene': 'TACC2', 'score': 0.26}]
chr10	GH10I121973	121973938	121975880	1.97	[{'connected_gene': 'NSMCE4A', 'score': 576.05}, {'connected_gene': 'ATE1-AS1', 'score': 11.01}, {'connected_gene': 'ENSG00000273891', 'score': 0.44}]
chr10	GH10I122306	122306131	122312676	1.68	[{'connected_gene': 'BTBD16', 'score': 19.71}, {'connected_gene': 'IKZF5', 'score': 10.82}, {'connected_gene': 'BUB3', 'score': 10.44}, {'connected_gene': 'NSMCE4A', 'score': 10.39}, {'connected_gene': 'GC10P122346', 'score': 0.28}]
chr10	GH10I121910	121910246	121911751	0.65	[{'connected_gene': 'ATE1', 'score': 14.0}, {'connected_gene': 'NSMCE4A', 'score': 12.11}, {'connected_gene': 'ATE1-AS1', 'score': 10.71}, {'connected_gene': 'GC10M121896', 'score': 0.77}, {'connected_gene': 'GC10M121895', 'score': 0.77}, {'connected_gene': 'GC10M121913', 'score': 0.44}]
chr10	GH10I121890	121890535	121891955	0.56	[{'connected_gene': 'ATE1', 'score': 13.64}, {'connected_gene': 'NSMCE4A', 'score': 12.23}, {'connected_gene': 'ENSG00000224250', 'score': 10.73}, {'connected_gene': 'GC10M121883', 'score': 0.44}, {'connected_gene': 'GC10M121896', 'score': 0.37}, {'connected_gene': 'GC10M121895', 'score': 0.37}]
chr10	GH10I121987	121987746	121989612	1.33	[{'connected_gene': 'TACC2', 'score': 550.77}, {'connected_gene': 'NSMCE4A', 'score': 12.97}, {'connected_gene': 'ATE1', 'score': 8.22}, {'connected_gene': 'ATE1-AS1', 'score': 7.66}]
chr10	GH10I121990	121990171	121991055	0.63	[{'connected_gene': 'TACC2', 'score': 550.77}, {'connected_gene': 'ATE1-AS1', 'score': 16.08}, {'connected_gene': 'NSMCE4A', 'score': 10.37}, {'connected_gene': 'PIR33240', 'score': 0.31}]
chr10	GH10I121993	121993508	121996801	1.55	[{'connected_gene': 'TACC2', 'score': 550.44}, {'connected_gene': 'ATE1-AS1', 'score': 16.75}, {'connected_gene': 'NSMCE4A', 'score': 9.86}, {'connected_gene': 'PIR33240', 'score': 0.34}]
chr10	GH10I121323	121322379	121327174	0.94	[{'connected_gene': 'LOC105378523', 'score': 550.77}, {'connected_gene': 'WDR11', 'score': 17.62}, {'connected_gene': 'NSMCE4A', 'score': 10.36}, {'connected_gene': 'GC10M121343', 'score': 0.29}]
chr10	GH10I121998	121998530	122000162	0.51	[{'connected_gene': 'ATE1-AS1', 'score': 9.96}, {'connected_gene': 'NSMCE4A', 'score': 9.77}, {'connected_gene': 'ATE1', 'score': 5.63}, {'connected_gene': 'TACC2', 'score': 0.39}, {'connected_gene': 'PIR33240', 'score': 0.34}]
chr10	GH10I122014	122014547	122015595	0.66	[{'connected_gene': 'ATE1-AS1', 'score': 14.39}, {'connected_gene': 'NSMCE4A', 'score': 8.89}, {'connected_gene': 'PIR33240', 'score': 0.77}, {'connected_gene': 'TACC2', 'score': 0.31}]
chr10	GH10I122012	122012640	122014166	0.87	[{'connected_gene': 'ATE1-AS1', 'score': 14.16}, {'connected_gene': 'NSMCE4A', 'score': 8.9}, {'connected_gene': 'PIR33240', 'score': 0.44}, {'connected_gene': 'TACC2', 'score': 0.34}]
chr10	GH10I121926	121926180	121931429	2.25	[{'connected_gene': 'ATE1-AS1', 'score': 606.37}, {'connected_gene': 'ATE1', 'score': 562.78}, {'connected_gene': 'GC10M121925', 'score': 550.77}, {'connected_gene': 'NSMCE4A', 'score': 14.05}, {'connected_gene': 'GC10P121933', 'score': 0.77}]
chr10	GH10I121942	121942406	121943746	0.8	[{'connected_gene': 'GC10M121941', 'score': 550.77}, {'connected_gene': 'GC10M121943', 'score': 550.77}, {'connected_gene': 'GC10M121944', 'score': 550.77}, {'connected_gene': 'GC10M121942', 'score': 550.77}, {'connected_gene': 'NSMCE4A', 'score': 14.1}, {'connected_gene': 'ATE1', 'score': 12.11}, {'connected_gene': 'ATE1-AS1', 'score': 12.02}, {'connected_gene': 'GC10M121946', 'score': 0.77}]
chr10	GH10I121956	121956303	121957402	0.38	[{'connected_gene': 'ENSG00000276742', 'score': 550.77}, {'connected_gene': 'NSMCE4A', 'score': 14.2}, {'connected_gene': 'ATE1', 'score': 11.47}, {'connected_gene': 'ENSG00000273891', 'score': 0.44}]
chr10	GH10I121947	121947758	121947917	0.22	[{'connected_gene': 'GC10M121947', 'score': 550.77}, {'connected_gene': 'ENSG00000273767', 'score': 550.77}, {'connected_gene': 'GC10M121946', 'score': 550.77}, {'connected_gene': 'ATE1-AS1', 'score': 28.84}, {'connected_gene': 'BTBD16', 'score': 17.27}, {'connected_gene': 'NSMCE4A', 'score': 12.59}, {'connected_gene': 'PLEKHA1', 'score': 5.92}]