PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000476882	[[78445225, 78445303], [78546358, 78546544], [78558440, 78558488]]	None
ENST00000370759	[[78511585, 78512018], [78546358, 78546544], [78560635, 78560816], [78585076, 78585183], [78591564, 78591646], [78601275, 78604133]]	[[78511778, 78512018], [78546358, 78546544], [78560635, 78560816], [78585076, 78585183], [78591564, 78591646], [78601275, 78601427]]
NM_001304725	[[78510645, 78510778], [78546358, 78546544], [78560635, 78560816], [78585076, 78585183], [78591564, 78591646], [78601275, 78604133]]	[[78510760, 78510778], [78546358, 78546544], [78560635, 78560816], [78585076, 78585183], [78591564, 78591646], [78601275, 78601427]]
NM_017655	[[78511588, 78512018], [78546358, 78546544], [78560635, 78560816], [78585076, 78585183], [78591564, 78591646], [78601275, 78604133]]	[[78511778, 78512018], [78546358, 78546544], [78560635, 78560816], [78585076, 78585183], [78591564, 78591646], [78601275, 78601427]]

Promoter

Chrom	Start	End	Description
chr1	78445182	78445191	CAGE_peak_4_at_GIPC2_5end
chr1	78445206	78445239	CAGE_peak_3_at_GIPC2_5end
chr1	78510648	78510661	CAGE_peak_7_at_GIPC2_5end
chr1	78511640	78511688	CAGE_peak_2_at_GIPC2_5end
chr1	78511695	78511758	CAGE_peak_1_at_GIPC2_5end
chr1	78511901	78511912	CAGE_peak_6_at_GIPC2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I078080	78080802	78081199	0.51	[{'connected_gene': 'NEXN', 'score': 4.94}, {'connected_gene': 'RNU6-1102P', 'score': 0.44}, {'connected_gene': 'LOC100131495', 'score': 0.28}, {'connected_gene': 'GIPC2', 'score': 0.15}]
chr1	GH01I077975	77975531	77981032	2.3	[{'connected_gene': 'GIPC2', 'score': 558.59}, {'connected_gene': 'DNAJB4', 'score': 550.77}, {'connected_gene': 'FUBP1', 'score': 550.77}, {'connected_gene': 'NSRP1P1', 'score': 16.28}, {'connected_gene': 'ENSG00000273338', 'score': 12.57}, {'connected_gene': 'USP33', 'score': 10.11}, {'connected_gene': 'ZZZ3', 'score': 9.74}, {'connected_gene': 'NEXN', 'score': 6.34}, {'connected_gene': 'NEXN-AS1', 'score': 0.17}]
chr1	GH01I078044	78044499	78048167	2.05	[{'connected_gene': 'GIPC2', 'score': 558.27}, {'connected_gene': 'RNU6-1102P', 'score': 11.9}, {'connected_gene': 'LOC100422537', 'score': 11.88}, {'connected_gene': 'NEXN', 'score': 5.47}, {'connected_gene': 'LOC100131495', 'score': 0.77}]
chr1	GH01I078082	78082119	78082760	0.78	[{'connected_gene': 'GIPC2', 'score': 11.2}, {'connected_gene': 'RNU6-1102P', 'score': 0.44}, {'connected_gene': 'LOC100131495', 'score': 0.28}]
chr1	GH01I078099	78099994	78105279	1.34	[{'connected_gene': 'GIPC2', 'score': 8.71}, {'connected_gene': 'IFI44', 'score': 4.52}, {'connected_gene': 'RNA5SP22', 'score': 0.44}, {'connected_gene': 'GC01M078095', 'score': 0.44}, {'connected_gene': 'GC01M078144', 'score': 0.23}]
chr1	GH01I078113	78113457	78115086	1.18	[{'connected_gene': 'GIPC2', 'score': 8.34}, {'connected_gene': 'RNA5SP22', 'score': 0.37}, {'connected_gene': 'GC01M078095', 'score': 0.37}, {'connected_gene': 'GC01M078144', 'score': 0.28}]
chr1	GH01I078141	78141054	78143857	0.76	[{'connected_gene': 'GIPC2', 'score': 7.37}, {'connected_gene': 'GC01M078144', 'score': 0.39}, {'connected_gene': 'RNA5SP22', 'score': 0.25}, {'connected_gene': 'GC01M078095', 'score': 0.25}]
chr1	GH01I078073	78073196	78077055	0.49	[{'connected_gene': 'GIPC2', 'score': 11.21}, {'connected_gene': 'RNA5SP21', 'score': 9.42}, {'connected_gene': 'MIGA1', 'score': 9.42}, {'connected_gene': 'ACTG1P21', 'score': 9.42}, {'connected_gene': 'NEXN', 'score': 5.24}, {'connected_gene': 'RNU6-1102P', 'score': 0.39}, {'connected_gene': 'LOC100131495', 'score': 0.29}]
chr1	GH01I077926	77926600	77927001	0.86	[{'connected_gene': 'GIPC2', 'score': 11.42}, {'connected_gene': 'RNA5SP21', 'score': 10.76}, {'connected_gene': 'MIGA1', 'score': 10.76}, {'connected_gene': 'ACTG1P21', 'score': 10.75}, {'connected_gene': 'NEXN-AS1', 'score': 0.28}, {'connected_gene': 'NEXN', 'score': 0.28}, {'connected_gene': 'DNAJB4', 'score': 0.23}]
chr1	GH01I078038	78038497	78038726	0.59	[{'connected_gene': 'GIPC2', 'score': 12.03}, {'connected_gene': 'LOC100131495', 'score': 0.44}, {'connected_gene': 'ENSG00000273338', 'score': 0.29}]
chr1	GH01I078033	78033219	78034467	0.57	[{'connected_gene': 'GIPC2', 'score': 7.41}, {'connected_gene': 'LOC100131495', 'score': 0.39}, {'connected_gene': 'ENSG00000273338', 'score': 0.31}]
chr1	GH01I078070	78070284	78072412	1.06	[{'connected_gene': 'GIPC2', 'score': 11.22}, {'connected_gene': 'ACTG1P21', 'score': 9.4}, {'connected_gene': 'RNA5SP21', 'score': 9.4}, {'connected_gene': 'MIGA1', 'score': 9.4}, {'connected_gene': 'IFI44', 'score': 6.32}, {'connected_gene': 'RNU6-1102P', 'score': 0.37}, {'connected_gene': 'LOC100131495', 'score': 0.31}]
chr1	GH01I077886	77886914	77891885	2.13	[{'connected_gene': 'NEXN-AS1', 'score': 555.96}, {'connected_gene': 'NEXN', 'score': 555.62}, {'connected_gene': 'USP33', 'score': 10.37}, {'connected_gene': 'GIPC2', 'score': 7.97}, {'connected_gene': 'FUBP1', 'score': 6.25}, {'connected_gene': 'IFI44', 'score': 5.11}]
chr1	GH01I077904	77904171	77905371	0.31	[{'connected_gene': 'MIGA1', 'score': 10.12}, {'connected_gene': 'ACTG1P21', 'score': 10.12}, {'connected_gene': 'RNA5SP21', 'score': 10.11}, {'connected_gene': 'ZZZ3', 'score': 9.75}, {'connected_gene': 'GIPC2', 'score': 7.95}, {'connected_gene': 'NEXN', 'score': 7.14}, {'connected_gene': 'NEXN-AS1', 'score': 0.37}, {'connected_gene': 'DNAJB4', 'score': 0.19}]
chr1	GH01I077429	77429415	77433832	0.66	[{'connected_gene': 'AK5', 'score': 31.45}, {'connected_gene': 'ENSG00000233099', 'score': 10.48}, {'connected_gene': 'GIPC2', 'score': 4.64}, {'connected_gene': 'GC01P077421', 'score': 0.39}, {'connected_gene': 'GC01P077502', 'score': 0.19}]
chr1	GH01I077504	77504539	77505752	0.66	[{'connected_gene': 'AK5', 'score': 15.68}, {'connected_gene': 'ENSG00000233099', 'score': 10.83}, {'connected_gene': 'RNU7-8P', 'score': 10.21}, {'connected_gene': 'GIPC2', 'score': 5.8}, {'connected_gene': 'GC01P077502', 'score': 0.77}, {'connected_gene': 'GC01P077577', 'score': 0.19}]
chr1	GH01I077509	77509377	77516460	1.33	[{'connected_gene': 'AK5', 'score': 16.52}, {'connected_gene': 'ENSG00000233099', 'score': 10.82}, {'connected_gene': 'RNU7-8P', 'score': 10.67}, {'connected_gene': 'ZZZ3', 'score': 10.14}, {'connected_gene': 'GIPC2', 'score': 5.77}, {'connected_gene': 'FUBP1', 'score': 4.47}, {'connected_gene': 'GC01P077502', 'score': 0.39}, {'connected_gene': 'GC01P077577', 'score': 0.21}]
chr1	GH01I077680	77680898	77684896	2.1	[{'connected_gene': 'ZZZ3', 'score': 575.81}, {'connected_gene': 'FUBP1', 'score': 48.24}, {'connected_gene': 'RPL17P6', 'score': 33.4}, {'connected_gene': 'ENSG00000273338', 'score': 10.64}, {'connected_gene': 'NEXN', 'score': 10.3}, {'connected_gene': 'GIPC2', 'score': 7.92}, {'connected_gene': 'AK5', 'score': 7.31}, {'connected_gene': 'DNAJB4', 'score': 6.49}, {'connected_gene': 'RN7SL370P', 'score': 0.28}]
chr1	GH01I077561	77561254	77561547	0.22	[{'connected_gene': 'ZZZ3', 'score': 10.34}, {'connected_gene': 'RNU7-8P', 'score': 9.55}, {'connected_gene': 'GIPC2', 'score': 6.92}, {'connected_gene': 'MIGA1', 'score': 2.32}, {'connected_gene': 'GC01P077577', 'score': 0.37}, {'connected_gene': 'GC01P077502', 'score': 0.22}]
chr1	GH01I077958	77958167	77959481	0.49	[{'connected_gene': 'USP33', 'score': 10.6}, {'connected_gene': 'GIPC2', 'score': 7.45}, {'connected_gene': 'NEXN', 'score': 4.47}, {'connected_gene': 'DNAJB4', 'score': 0.34}, {'connected_gene': 'FUBP1', 'score': 0.34}, {'connected_gene': 'NEXN-AS1', 'score': 0.2}]
chr1	GH01I077671	77671712	77673346	0.54	[{'connected_gene': 'USP33', 'score': 10.71}, {'connected_gene': 'AK5', 'score': 7.32}, {'connected_gene': 'GIPC2', 'score': 5.31}, {'connected_gene': 'ZZZ3', 'score': 0.39}, {'connected_gene': 'RN7SL370P', 'score': 0.31}]
chr1	GH01I078002	78002645	78011212	2.76	[{'connected_gene': 'DNAJB4', 'score': 561.9}, {'connected_gene': 'NSRP1P1', 'score': 25.46}, {'connected_gene': 'FUBP1', 'score': 23.06}, {'connected_gene': 'ENSG00000273338', 'score': 13.03}, {'connected_gene': 'USP33', 'score': 11.91}, {'connected_gene': 'ZZZ3', 'score': 9.73}, {'connected_gene': 'GIPC2', 'score': 7.43}, {'connected_gene': 'NEXN', 'score': 6.05}, {'connected_gene': 'LOC100131495', 'score': 0.28}]
chr1	GH01I078061	78061025	78062856	1	[{'connected_gene': 'RNU6-1102P', 'score': 12.06}, {'connected_gene': 'LOC100422537', 'score': 12.06}, {'connected_gene': 'NEXN', 'score': 5.23}, {'connected_gene': 'FUBP1', 'score': 4.21}, {'connected_gene': 'LOC100131495', 'score': 0.37}, {'connected_gene': 'GIPC2', 'score': 0.18}]
chr1	GH01I078052	78052877	78053026	0.38	[{'connected_gene': 'RNU6-1102P', 'score': 11.63}, {'connected_gene': 'LOC100422537', 'score': 11.63}, {'connected_gene': 'NEXN', 'score': 6.58}, {'connected_gene': 'LOC100131495', 'score': 0.44}, {'connected_gene': 'GIPC2', 'score': 0.19}]
chr1	GH01I078055	78055174	78056340	0.82	[{'connected_gene': 'RNU6-1102P', 'score': 11.64}, {'connected_gene': 'LOC100422537', 'score': 11.63}, {'connected_gene': 'GIPC2', 'score': 11.57}, {'connected_gene': 'NEXN', 'score': 4.93}, {'connected_gene': 'LOC100131495', 'score': 0.39}]
chr1	GH01I077991	77991094	77992082	0.49	[{'connected_gene': 'RNU6-1102P', 'score': 11.08}, {'connected_gene': 'LOC100422537', 'score': 11.08}, {'connected_gene': 'GIPC2', 'score': 0.39}, {'connected_gene': 'DNAJB4', 'score': 0.39}, {'connected_gene': 'ENSG00000273338', 'score': 0.39}]
chr1	GH01I078057	78057880	78059982	0.43	[{'connected_gene': 'RNU6-1102P', 'score': 12.29}, {'connected_gene': 'LOC100422537', 'score': 12.29}, {'connected_gene': 'GIPC2', 'score': 10.13}, {'connected_gene': 'LOC100131495', 'score': 0.39}]
chr1	GH01I078079	78079401	78079600	0.4	[{'connected_gene': 'RNU6-1102P', 'score': 0.44}, {'connected_gene': 'LOC100131495', 'score': 0.28}, {'connected_gene': 'GIPC2', 'score': 0.15}]
chr1	GH01I078094	78094069	78098904	1.19	[{'connected_gene': 'RNA5SP22', 'score': 550.77}, {'connected_gene': 'GC01M078095', 'score': 550.77}, {'connected_gene': 'GIPC2', 'score': 10.89}, {'connected_gene': 'GC01M078144', 'score': 0.22}]
chr1	GH01I077778	77778958	77780653	2.02	[{'connected_gene': 'RNA5SP21', 'score': 550.77}, {'connected_gene': 'MIGA1', 'score': 550.77}, {'connected_gene': 'GIPC2', 'score': 5.34}]
chr1	GH01I078091	78091662	78092026	0.92	[{'connected_gene': 'LOC100422537', 'score': 550.77}, {'connected_gene': 'GIPC2', 'score': 10.98}, {'connected_gene': 'RNA5SP22', 'score': 0.77}, {'connected_gene': 'GC01M078095', 'score': 0.77}]
chr1	GH01I078092	78092817	78092966	0.71	[{'connected_gene': 'LOC100422537', 'score': 550.77}, {'connected_gene': 'RNA5SP22', 'score': 0.77}, {'connected_gene': 'GC01M078095', 'score': 0.77}, {'connected_gene': 'GIPC2', 'score': 0.14}]
chr1	GH01I078037	78037947	78038428	0.46	[{'connected_gene': 'LOC100131495', 'score': 0.44}, {'connected_gene': 'ENSG00000273338', 'score': 0.29}, {'connected_gene': 'GIPC2', 'score': 0.22}]
chr1	GH01I077686	77686783	77688200	0.72	[{'connected_gene': 'ACTG1P21', 'score': 10.42}, {'connected_gene': 'RNA5SP21', 'score': 10.41}, {'connected_gene': 'MIGA1', 'score': 10.41}, {'connected_gene': 'AK5', 'score': 10.23}, {'connected_gene': 'GIPC2', 'score': 8.88}, {'connected_gene': 'ZZZ3', 'score': 0.77}, {'connected_gene': 'USP33', 'score': 0.19}]