Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000205636 [[32522803, 32525589], [32529429, 32529528], [32533201, 32533378], [32544099, 32544900]] [[32525451, 32525589], [32529429, 32529528], [32533201, 32533378], [32544099, 32544237]]
ENST00000478886 [[32525230, 32525589], [32529429, 32529873]] None
ENST00000495177 [[32529224, 32529528], [32533201, 32533378], [32544099, 32544288]] None
NM_017801 [[32522803, 32525589], [32529429, 32529528], [32533201, 32533378], [32544099, 32544403]] [[32525451, 32525589], [32529429, 32529528], [32533201, 32533378], [32544099, 32544237]]
Promoter
Chrom Start End Description
chr3 32525474 32525488 CAGE_peak_2_at_CMTM6_5end
chr3 32544275 32544350 CAGE_peak_1_at_CMTM6_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr3 GH03I033437 33437191 33442682 2.31 [{'connected_gene': 'UBP1', 'score': 578.92}, {'connected_gene': 'PIR40256', 'score': 550.77}, {'connected_gene': 'CNOT10', 'score': 69.7}, {'connected_gene': 'PDCD6IP', 'score': 44.86}, {'connected_gene': 'FBXL2', 'score': 20.53}, {'connected_gene': 'GLB1', 'score': 20.05}, {'connected_gene': 'TMPPE', 'score': 19.35}, {'connected_gene': 'CMTM6', 'score': 9.75}, {'connected_gene': 'GC03M033417', 'score': 0.39}]
chr3 GH03I032888 32888432 32888466 0.23 [{'connected_gene': 'SUGT1P2', 'score': 11.45}, {'connected_gene': 'CNOT10-AS1', 'score': 11.43}, {'connected_gene': 'CNOT10', 'score': 11.41}, {'connected_gene': 'TRIM71', 'score': 10.99}, {'connected_gene': 'CMTM6', 'score': 9.6}, {'connected_gene': 'RPL31P18', 'score': 9.59}, {'connected_gene': 'PIR42638', 'score': 0.77}, {'connected_gene': 'PIR32571', 'score': 0.39}, {'connected_gene': 'GC03M032797', 'score': 0.37}]
chr3 GH03I032177 32177089 32178322 1.12 [{'connected_gene': 'RPSAP11', 'score': 11.87}, {'connected_gene': 'CMTM8', 'score': 11.6}, {'connected_gene': 'KRT18P15', 'score': 11.06}, {'connected_gene': 'RPL31P18', 'score': 9.71}, {'connected_gene': 'CMTM6', 'score': 9.71}, {'connected_gene': 'OSBPL10', 'score': 5.9}, {'connected_gene': 'ENSG00000236732', 'score': 0.31}, {'connected_gene': 'GC03M031988', 'score': 0.07}]
chr3 GH03I032365 32365706 32369159 0.52 [{'connected_gene': 'CMTM6', 'score': 15.8}, {'connected_gene': 'KRT18P15', 'score': 10.82}, {'connected_gene': 'RPL31P18', 'score': 10.81}, {'connected_gene': 'CMTM7', 'score': 6.03}, {'connected_gene': 'GC03M031988', 'score': 0.28}, {'connected_gene': 'GC03P032261', 'score': 0.14}, {'connected_gene': 'CMTM8', 'score': 0.13}]
chr3 GH03I032497 32497801 32499000 1.04 [{'connected_gene': 'CMTM6', 'score': 18.64}, {'connected_gene': 'DYNC1LI1', 'score': 10.78}, {'connected_gene': 'CNOT10', 'score': 10.13}, {'connected_gene': 'SUGT1P2', 'score': 10.12}, {'connected_gene': 'CNOT10-AS1', 'score': 10.12}, {'connected_gene': 'GC03P032466', 'score': 0.29}]
chr3 GH03I032483 32483733 32485360 0.92 [{'connected_gene': 'CMTM6', 'score': 15.22}, {'connected_gene': 'DYNC1LI1', 'score': 10.53}, {'connected_gene': 'GC03P032466', 'score': 0.37}]
chr3 GH03I032487 32487580 32489035 0.31 [{'connected_gene': 'CMTM6', 'score': 19.26}, {'connected_gene': 'DYNC1LI1', 'score': 10.57}, {'connected_gene': 'GC03P032466', 'score': 0.34}]
chr3 GH03I032370 32370149 32373039 0.86 [{'connected_gene': 'CMTM6', 'score': 15.5}, {'connected_gene': 'RPL31P18', 'score': 11.09}, {'connected_gene': 'KRT18P15', 'score': 10.59}, {'connected_gene': 'CMTM7', 'score': 10.34}, {'connected_gene': 'GC03M031988', 'score': 0.29}, {'connected_gene': 'GC03P032261', 'score': 0.14}, {'connected_gene': 'CMTM8', 'score': 0.12}]
chr3 GH03I032384 32384975 32385270 0.83 [{'connected_gene': 'CMTM6', 'score': 11.37}, {'connected_gene': 'RPL31P18', 'score': 11.37}, {'connected_gene': 'KRT18P15', 'score': 9.52}, {'connected_gene': 'CMTM7', 'score': 0.44}, {'connected_gene': 'GC03M031988', 'score': 0.37}, {'connected_gene': 'GC03P032261', 'score': 0.13}]
chr3 GH03I032430 32430802 32434111 1.42 [{'connected_gene': 'CMTM6', 'score': 15.5}, {'connected_gene': 'RPL31P18', 'score': 11.07}, {'connected_gene': 'DYNC1LI1', 'score': 10.47}, {'connected_gene': 'CMTM7', 'score': 8.78}, {'connected_gene': 'GC03M031988', 'score': 0.31}, {'connected_gene': 'GC03P032466', 'score': 0.29}]
chr3 GH03I032481 32481577 32483190 0.49 [{'connected_gene': 'CMTM6', 'score': 17.97}, {'connected_gene': 'RPL31P18', 'score': 11.53}, {'connected_gene': 'DYNC1LI1', 'score': 10.78}, {'connected_gene': 'GC03P032466', 'score': 0.37}, {'connected_gene': 'CMTM7', 'score': 0.16}]
chr3 GH03I032480 32480427 32481553 0.31 [{'connected_gene': 'CMTM6', 'score': 11.56}, {'connected_gene': 'RPL31P18', 'score': 11.53}, {'connected_gene': 'DYNC1LI1', 'score': 10.78}, {'connected_gene': 'CMTM7', 'score': 5.68}, {'connected_gene': 'GC03P032466', 'score': 0.39}]
chr3 GH03I032445 32445909 32448532 0.46 [{'connected_gene': 'CMTM6', 'score': 14.71}, {'connected_gene': 'RPL31P18', 'score': 10.47}, {'connected_gene': 'CMTM7', 'score': 8.2}, {'connected_gene': 'GC03P032466', 'score': 0.37}, {'connected_gene': 'GC03M031988', 'score': 0.26}]
chr3 GH03I032438 32438331 32442210 1.2 [{'connected_gene': 'CMTM6', 'score': 10.98}, {'connected_gene': 'RPL31P18', 'score': 10.97}, {'connected_gene': 'CMTM7', 'score': 8.22}, {'connected_gene': 'GC03P032466', 'score': 0.31}, {'connected_gene': 'GC03M031988', 'score': 0.28}]
chr3 GH03I032442 32442515 32444321 0.92 [{'connected_gene': 'CMTM6', 'score': 14.93}, {'connected_gene': 'RPL31P18', 'score': 10.63}, {'connected_gene': 'CMTM7', 'score': 6.33}, {'connected_gene': 'GC03P032466', 'score': 0.34}, {'connected_gene': 'GC03M031988', 'score': 0.28}]
chr3 GH03I032436 32436401 32437118 1.02 [{'connected_gene': 'CMTM6', 'score': 10.97}, {'connected_gene': 'RPL31P18', 'score': 10.96}, {'connected_gene': 'GC03M031988', 'score': 0.29}, {'connected_gene': 'GC03P032466', 'score': 0.29}, {'connected_gene': 'CMTM7', 'score': 0.25}]
chr3 GH03I032468 32468932 32471223 1.33 [{'connected_gene': 'CMTM6', 'score': 18.0}, {'connected_gene': 'RPL31P18', 'score': 11.58}, {'connected_gene': 'CMTM7', 'score': 5.28}, {'connected_gene': 'GC03P032466', 'score': 0.77}]
chr3 GH03I032501 32501005 32503675 2.24 [{'connected_gene': 'CMTM6', 'score': 566.72}, {'connected_gene': 'CNOT10', 'score': 32.83}, {'connected_gene': 'UBP1', 'score': 11.46}, {'connected_gene': 'DYNC1LI1', 'score': 10.65}, {'connected_gene': 'SUGT1P2', 'score': 10.12}, {'connected_gene': 'CNOT10-AS1', 'score': 10.12}, {'connected_gene': 'GC03P032466', 'score': 0.28}]
chr3 GH03I032455 32455242 32463199 1.52 [{'connected_gene': 'CMTM6', 'score': 6.73}, {'connected_gene': 'CMTM7', 'score': 6.73}, {'connected_gene': 'CCR4', 'score': 3.83}, {'connected_gene': 'CNOT10', 'score': 1.45}, {'connected_gene': 'GC03P032466', 'score': 0.44}, {'connected_gene': 'GC03M031988', 'score': 0.23}]
chr3 GH03I032516 32516002 32517400 1.13 [{'connected_gene': 'CMTM6', 'score': 5.98}, {'connected_gene': 'GC03P032511', 'score': 0.77}, {'connected_gene': 'GC03M032525', 'score': 0.37}]
chr3 GH03I032493 32493801 32494800 1.16 [{'connected_gene': 'CMTM6', 'score': 0.44}, {'connected_gene': 'GC03P032466', 'score': 0.31}]
chr3 GH03I032596 32596444 32598055 0.77 [{'connected_gene': 'DYNC1LI1', 'score': 17.94}, {'connected_gene': 'RPL31P18', 'score': 11.23}, {'connected_gene': 'CMTM6', 'score': 11.22}, {'connected_gene': 'CNOT10', 'score': 11.05}, {'connected_gene': 'CNOT10-AS1', 'score': 10.57}, {'connected_gene': 'SUGT1P2', 'score': 10.56}, {'connected_gene': 'ENSG00000226955', 'score': 0.77}, {'connected_gene': 'PIR37638', 'score': 0.44}, {'connected_gene': 'GC03P032571', 'score': 0.31}]
chr3 GH03I032499 32499601 32499800 0.51 [{'connected_gene': 'DYNC1LI1', 'score': 10.64}, {'connected_gene': 'CNOT10', 'score': 10.13}, {'connected_gene': 'SUGT1P2', 'score': 10.12}, {'connected_gene': 'CNOT10-AS1', 'score': 10.12}, {'connected_gene': 'CMTM6', 'score': 0.77}, {'connected_gene': 'GC03P032466', 'score': 0.29}]
chr3 GH03I032359 32359863 32360202 0.43 [{'connected_gene': 'RPL31P18', 'score': 10.81}, {'connected_gene': 'CMTM6', 'score': 10.81}, {'connected_gene': 'KRT18P15', 'score': 10.45}, {'connected_gene': 'CMTM7', 'score': 0.29}, {'connected_gene': 'GC03M031988', 'score': 0.26}, {'connected_gene': 'GC03P032261', 'score': 0.15}, {'connected_gene': 'CMTM8', 'score': 0.13}]
chr3 GH03I032427 32427049 32429336 1.04 [{'connected_gene': 'RPL31P18', 'score': 11.07}, {'connected_gene': 'CMTM6', 'score': 11.07}, {'connected_gene': 'DYNC1LI1', 'score': 10.47}, {'connected_gene': 'CMTM7', 'score': 5.71}, {'connected_gene': 'GC03M031988', 'score': 0.34}, {'connected_gene': 'GC03P032466', 'score': 0.28}]
chr3 GH03I032477 32477352 32478982 0.31 [{'connected_gene': 'RPL31P18', 'score': 11.53}, {'connected_gene': 'CMTM6', 'score': 11.53}, {'connected_gene': 'DYNC1LI1', 'score': 10.77}, {'connected_gene': 'CMTM7', 'score': 5.68}, {'connected_gene': 'GC03P032466', 'score': 0.39}]
chr3 GH03I032472 32472557 32473400 0.58 [{'connected_gene': 'RPL31P18', 'score': 11.53}, {'connected_gene': 'CMTM6', 'score': 11.53}, {'connected_gene': 'DYNC1LI1', 'score': 10.76}, {'connected_gene': 'GC03P032466', 'score': 0.44}, {'connected_gene': 'CMTM7', 'score': 0.18}]
chr3 GH03I032577 32577002 32578605 0.95 [{'connected_gene': 'RPL31P18', 'score': 11.04}, {'connected_gene': 'CMTM6', 'score': 11.03}, {'connected_gene': 'GC03P032571', 'score': 0.44}, {'connected_gene': 'ENSG00000226955', 'score': 0.37}]
chr3 GH03I032583 32583849 32583998 0.2 [{'connected_gene': 'RPL31P18', 'score': 10.89}, {'connected_gene': 'CMTM6', 'score': 10.88}, {'connected_gene': 'ENSG00000226955', 'score': 0.44}, {'connected_gene': 'GC03P032571', 'score': 0.39}]
chr3 GH03I032684 32684049 32687361 2.06 [{'connected_gene': 'CNOT10', 'score': 575.49}, {'connected_gene': 'GLB1', 'score': 24.72}, {'connected_gene': 'TMPPE', 'score': 20.47}, {'connected_gene': 'UBP1', 'score': 11.03}, {'connected_gene': 'DYNC1LI1', 'score': 10.26}, {'connected_gene': 'RPL31P18', 'score': 10.15}, {'connected_gene': 'CMTM6', 'score': 10.15}, {'connected_gene': 'ENSG00000236732', 'score': 9.94}, {'connected_gene': 'TRIM71', 'score': 9.5}, {'connected_gene': 'PIR58788', 'score': 0.37}]
chr3 GH03I032695 32695492 32695551 0.61 [{'connected_gene': 'CNOT10', 'score': 550.39}, {'connected_gene': 'CNOT10-AS1', 'score': 10.64}, {'connected_gene': 'SUGT1P2', 'score': 10.6}, {'connected_gene': 'RPL31P18', 'score': 10.35}, {'connected_gene': 'CMTM6', 'score': 10.35}, {'connected_gene': 'TRIM71', 'score': 9.73}, {'connected_gene': 'PIR58788', 'score': 0.44}]
chr3 GH03I032708 32708809 32709639 0.92 [{'connected_gene': 'CNOT10', 'score': 11.53}, {'connected_gene': 'CNOT10-AS1', 'score': 11.5}, {'connected_gene': 'SUGT1P2', 'score': 11.45}, {'connected_gene': 'TRIM71', 'score': 10.34}, {'connected_gene': 'RPL31P18', 'score': 10.0}, {'connected_gene': 'CMTM6', 'score': 10.0}, {'connected_gene': 'TMPPE', 'score': 5.26}, {'connected_gene': 'PIR58788', 'score': 0.77}]
chr3 GH03I032884 32884229 32885312 0.38 [{'connected_gene': 'TRIM71', 'score': 11.78}, {'connected_gene': 'SUGT1P2', 'score': 11.07}, {'connected_gene': 'CNOT10-AS1', 'score': 11.07}, {'connected_gene': 'CNOT10', 'score': 11.04}, {'connected_gene': 'RPL31P18', 'score': 9.03}, {'connected_gene': 'CMTM6', 'score': 9.03}, {'connected_gene': 'PIR42638', 'score': 0.44}, {'connected_gene': 'PIR32571', 'score': 0.44}, {'connected_gene': 'GC03M032797', 'score': 0.37}]
chr3 GH03I032418 32418885 32425681 1.61 [{'connected_gene': 'CMTM7', 'score': 17.12}, {'connected_gene': 'CMTM6', 'score': 11.68}, {'connected_gene': 'CNOT10', 'score': 11.08}, {'connected_gene': 'RPL31P18', 'score': 10.4}, {'connected_gene': 'DYNC1LI1', 'score': 10.02}, {'connected_gene': 'GC03M031988', 'score': 0.37}, {'connected_gene': 'GC03P032466', 'score': 0.26}]
chr3 GH03I032467 32467401 32468598 1.21 [{'connected_gene': 'GC03P032466', 'score': 550.77}, {'connected_gene': 'CMTM6', 'score': 8.61}, {'connected_gene': 'CMTM7', 'score': 0.18}]
chr3 GH03I032603 32603014 32603704 0.38 [{'connected_gene': 'PIR37638', 'score': 550.77}, {'connected_gene': 'DYNC1LI1', 'score': 11.85}, {'connected_gene': 'RPL31P18', 'score': 11.17}, {'connected_gene': 'CMTM6', 'score': 11.17}, {'connected_gene': 'CNOT10', 'score': 10.63}, {'connected_gene': 'CNOT10-AS1', 'score': 10.57}, {'connected_gene': 'SUGT1P2', 'score': 10.57}, {'connected_gene': 'IGBP1P3', 'score': 0.37}, {'connected_gene': 'GC03P032571', 'score': 0.29}]
chr3 GH03I032592 32592109 32592218 0.38 [{'connected_gene': 'ENSG00000226955', 'score': 550.77}, {'connected_gene': 'DYNC1LI1', 'score': 12.26}, {'connected_gene': 'RPL31P18', 'score': 11.24}, {'connected_gene': 'CMTM6', 'score': 11.23}, {'connected_gene': 'GC03P032571', 'score': 0.34}]
chr3 GH03I031530 31530334 31535401 2.31 [{'connected_gene': 'GC03M031530', 'score': 550.77}, {'connected_gene': 'STT3B', 'score': 550.77}, {'connected_gene': 'ZNF860', 'score': 10.0}, {'connected_gene': 'CMTM6', 'score': 9.75}, {'connected_gene': 'GC03P031521', 'score': 0.39}, {'connected_gene': 'GC03M031604', 'score': 0.17}]

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