PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000460195	[[25824407, 25824771], [25825554, 25825600]]	None
ENST00000464688	[[25824529, 25824771], [25831257, 25831477]]	None
ENST00000452098	[[25824563, 25824771], [25832480, 25833171]]	[[25832511, 25833171]]
ENST00000280701	[[25831570, 25831638], [25832480, 25833488], [25835582, 25836025]]	[[25832511, 25833488], [25835582, 25835985]]
ENST00000448177	[[25831580, 25831638], [25832480, 25832806], [25833260, 25833488], [25835582, 25836014]]	[[25832511, 25832806], [25833260, 25833274]]
ENST00000420173	[[25831584, 25831638], [25832480, 25833187], [25833436, 25833488], [25835582, 25836025]]	[[25832511, 25833187], [25833436, 25833488], [25835582, 25835985]]
ENST00000449808	[[25831970, 25832307], [25832480, 25832806], [25833260, 25833332]]	None
ENST00000428266	[[25832276, 25832307], [25832480, 25833205]]	[[25832511, 25833205]]
NR_026937	[[25831562, 25831638], [25832480, 25832806], [25833260, 25833488], [25835582, 25836025]]	None
NM_001145391	[[25831562, 25831638], [25832480, 25833187], [25833436, 25833488], [25835582, 25836025]]	[[25832511, 25833187], [25833436, 25833488], [25835582, 25835985]]
NM_017897	[[25831562, 25831638], [25832480, 25833488], [25835582, 25836025]]	[[25832511, 25833488], [25835582, 25835985]]

Promoter

Chrom	Start	End	Description
chr3	25824405	25824416	CAGE_peak_8_at_OXSM_5end
chr3	25831567	25831602	CAGE_peak_1_at_OXSM_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I025854	25854550	25854699	0.62	[{'connected_gene': 'NGLY1', 'score': 10.98}, {'connected_gene': 'OXSM', 'score': 10.97}, {'connected_gene': 'LINC00692', 'score': 0.37}, {'connected_gene': 'LOC105377000', 'score': 0.34}]
chr3	GH03I025820	25820050	25821219	0.86	[{'connected_gene': 'NGLY1', 'score': 11.58}, {'connected_gene': 'OXSM', 'score': 11.56}, {'connected_gene': 'GC03P025816', 'score': 0.44}, {'connected_gene': 'LOC105377000', 'score': 0.39}]
chr3	GH03I025723	25723796	25726320	0.67	[{'connected_gene': 'OXSM', 'score': 15.79}, {'connected_gene': 'NGLY1', 'score': 11.3}, {'connected_gene': 'GC03M025722', 'score': 0.77}, {'connected_gene': 'PIR50853', 'score': 0.37}]
chr3	GH03I025780	25780650	25784459	2.02	[{'connected_gene': 'OXSM', 'score': 555.05}, {'connected_gene': 'NGLY1', 'score': 550.44}, {'connected_gene': 'GC03M025816', 'score': 0.77}, {'connected_gene': 'PIR47937', 'score': 0.77}, {'connected_gene': 'GC03M025805', 'score': 0.77}]
chr3	GH03I025749	25749072	25749442	0.22	[{'connected_gene': 'PIR32734', 'score': 550.77}, {'connected_gene': 'RPL32P11', 'score': 550.77}, {'connected_gene': 'GC03M025751', 'score': 550.77}, {'connected_gene': 'OXSM', 'score': 4.77}, {'connected_gene': 'PIR50853', 'score': 0.77}, {'connected_gene': 'NGLY1', 'score': 0.26}]
chr3	GH03I025788	25788490	25791224	2.06	[{'connected_gene': 'PIR57823', 'score': 550.77}, {'connected_gene': 'GC03M025809', 'score': 550.77}, {'connected_gene': 'PIR40434', 'score': 550.77}, {'connected_gene': 'GC03M025815', 'score': 550.77}, {'connected_gene': 'NGLY1', 'score': 550.77}, {'connected_gene': 'OXSM', 'score': 550.44}, {'connected_gene': 'LINC00692', 'score': 5.31}]
chr3	GH03I025791	25791601	25792000	0.2	[{'connected_gene': 'GC03P025793', 'score': 550.77}, {'connected_gene': 'GC03M025815', 'score': 550.77}, {'connected_gene': 'NGLY1', 'score': 550.77}, {'connected_gene': 'OXSM', 'score': 0.44}]
chr3	GH03I025792	25792201	25792400	0.2	[{'connected_gene': 'GC03P025793', 'score': 550.77}, {'connected_gene': 'GC03M025815', 'score': 550.77}, {'connected_gene': 'OXSM', 'score': 0.44}]