PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000419999	[[29072686, 29073108], [29073193, 29073271], [29073964, 29074149]]	[[29073064, 29073108], [29073193, 29073271], [29073964, 29074149]]
ENST00000306108	[[29072686, 29073108], [29073193, 29073271], [29073937, 29074164], [29075273, 29075365], [29083983, 29084174], [29087882, 29087985], [29092444, 29093167]]	[[29073064, 29073108], [29073193, 29073271], [29073937, 29074164], [29075273, 29075365], [29083983, 29084174], [29087882, 29087985], [29092444, 29093143]]
ENST00000439947	[[29072705, 29073108], [29073193, 29073271], [29075273, 29075365], [29083983, 29084174], [29087882, 29087985], [29092444, 29093161]]	[[29073255, 29073271], [29075273, 29075365], [29083983, 29084174], [29087882, 29087985], [29092444, 29093143]]
ENST00000490390	[[29074056, 29074164], [29075273, 29075365], [29083983, 29084356]]	None
ENST00000484060	[[29074134, 29074164], [29075273, 29075365], [29083983, 29084174], [29084777, 29084815]]	None
NM_017910	[[29072686, 29073108], [29073193, 29073271], [29073937, 29074164], [29075273, 29075365], [29083983, 29084174], [29087882, 29087985], [29092444, 29093175]]	[[29073064, 29073108], [29073193, 29073271], [29073937, 29074164], [29075273, 29075365], [29083983, 29084174], [29087882, 29087985], [29092444, 29093143]]

Promoter

Chrom	Start	End	Description
chr2	29093132	29093183	CAGE_peak_1_at_TRMT61B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I027884	27884926	27892403	2.5	[{'connected_gene': 'RBKS', 'score': 550.77}, {'connected_gene': 'BABAM2', 'score': 550.77}, {'connected_gene': 'TRMT61B', 'score': 10.11}, {'connected_gene': 'KRTCAP3', 'score': 5.24}, {'connected_gene': 'FNDC4', 'score': 5.23}, {'connected_gene': 'SLC4A1AP', 'score': 4.45}, {'connected_gene': 'BRE-AS1', 'score': 0.77}, {'connected_gene': 'GC02P027841', 'score': 0.25}, {'connected_gene': 'MRPL33', 'score': 0.13}, {'connected_gene': 'GC02M027478', 'score': 0.06}]
chr2	GH02I028705	28705442	28711796	1.07	[{'connected_gene': 'TRMT61B', 'score': 23.28}, {'connected_gene': 'PPP1CB', 'score': 22.26}, {'connected_gene': 'ENSG00000230730', 'score': 11.5}, {'connected_gene': 'SPDYA', 'score': 10.27}, {'connected_gene': 'WDR43', 'score': 7.37}, {'connected_gene': 'RNA5SP89', 'score': 0.34}, {'connected_gene': 'LOC100505774', 'score': 0.26}]
chr2	GH02I028786	28786830	28787036	0.26	[{'connected_gene': 'TRMT61B', 'score': 34.86}, {'connected_gene': 'PPP1CB', 'score': 2.7}, {'connected_gene': 'FOSL2', 'score': 1.77}, {'connected_gene': 'SPDYA', 'score': 0.77}, {'connected_gene': 'ENSG00000273233', 'score': 0.34}]
chr2	GH02I028735	28735581	28736864	1.06	[{'connected_gene': 'TRMT61B', 'score': 21.99}, {'connected_gene': 'PPP1CB', 'score': 0.37}, {'connected_gene': 'LOC100505774', 'score': 0.37}, {'connected_gene': 'RNA5SP89', 'score': 0.23}]
chr2	GH02I028728	28728609	28729753	0.38	[{'connected_gene': 'TRMT61B', 'score': 23.45}, {'connected_gene': 'PPP1CB', 'score': 0.34}, {'connected_gene': 'LOC100505774', 'score': 0.34}, {'connected_gene': 'RNA5SP89', 'score': 0.25}]
chr2	GH02I028744	28744574	28747061	0.43	[{'connected_gene': 'TRMT61B', 'score': 43.35}, {'connected_gene': 'ENSG00000230730', 'score': 10.69}, {'connected_gene': 'PPP1CB', 'score': 0.44}, {'connected_gene': 'LOC100505774', 'score': 0.44}, {'connected_gene': 'RNA5SP89', 'score': 0.21}]
chr2	GH02I028771	28771201	28771400	0.2	[{'connected_gene': 'TRMT61B', 'score': 28.64}, {'connected_gene': 'ENSG00000230730', 'score': 9.98}, {'connected_gene': 'SPDYA', 'score': 0.39}, {'connected_gene': 'PPP1CB', 'score': 0.37}, {'connected_gene': 'LOC100505774', 'score': 0.37}]
chr2	GH02I028713	28713273	28718709	1.68	[{'connected_gene': 'TRMT61B', 'score': 23.45}, {'connected_gene': 'FOSL2', 'score': 16.24}, {'connected_gene': 'PPP1CB', 'score': 14.74}, {'connected_gene': 'ENSG00000230730', 'score': 11.45}, {'connected_gene': 'WDR43', 'score': 5.08}, {'connected_gene': 'RNA5SP89', 'score': 0.29}, {'connected_gene': 'LOC100505774', 'score': 0.28}]
chr2	GH02I028802	28802282	28803998	0.82	[{'connected_gene': 'TRMT61B', 'score': 50.54}, {'connected_gene': 'WDR43', 'score': 16.32}, {'connected_gene': 'PPP1CB', 'score': 12.74}, {'connected_gene': 'SPDYA', 'score': 12.0}, {'connected_gene': 'ENSG00000230730', 'score': 9.91}, {'connected_gene': 'FOSL2', 'score': 4.25}, {'connected_gene': 'ENSG00000273233', 'score': 0.44}]
chr2	GH02I028904	28904415	28904604	0.54	[{'connected_gene': 'TRMT61B', 'score': 11.43}, {'connected_gene': 'WDR43', 'score': 0.44}, {'connected_gene': 'GC02P028913', 'score': 0.44}]
chr2	GH02I028821	28821401	28821624	0.96	[{'connected_gene': 'TRMT61B', 'score': 46.99}, {'connected_gene': 'TOGARAM2', 'score': 11.28}, {'connected_gene': 'SPDYA', 'score': 10.92}, {'connected_gene': 'WDR43', 'score': 10.8}, {'connected_gene': 'ENSG00000230730', 'score': 9.06}, {'connected_gene': 'ENSG00000273233', 'score': 0.39}]
chr2	GH02I028868	28868991	28871208	2.08	[{'connected_gene': 'TRMT61B', 'score': 594.23}, {'connected_gene': 'TOGARAM2', 'score': 21.89}, {'connected_gene': 'WDR43', 'score': 19.17}, {'connected_gene': 'FOSL2', 'score': 10.67}, {'connected_gene': 'FLJ31356', 'score': 10.24}, {'connected_gene': 'ENSG00000273233', 'score': 0.22}]
chr2	GH02I029165	29165243	29166355	0.88	[{'connected_gene': 'TRMT61B', 'score': 13.84}, {'connected_gene': 'LOC105374386', 'score': 11.47}, {'connected_gene': 'CLIP4', 'score': 11.47}, {'connected_gene': 'TOGARAM2', 'score': 10.91}, {'connected_gene': 'C2orf71', 'score': 5.86}, {'connected_gene': 'GC02P029290', 'score': 0.13}]
chr2	GH02I028701	28701709	28703471	0.75	[{'connected_gene': 'TRMT61B', 'score': 23.14}, {'connected_gene': 'RNA5SP89', 'score': 0.37}, {'connected_gene': 'PPP1CB', 'score': 0.25}]
chr2	GH02I028852	28852794	28853126	0.24	[{'connected_gene': 'TRMT61B', 'score': 2.01}, {'connected_gene': 'ENSG00000273233', 'score': 0.26}]
chr2	GH02I028837	28837582	28837774	0.24	[{'connected_gene': 'PPP1CB', 'score': 2.43}, {'connected_gene': 'ENSG00000273233', 'score': 0.31}, {'connected_gene': 'TRMT61B', 'score': 0.29}, {'connected_gene': 'SPDYA', 'score': 0.22}]
chr2	GH02I028542	28542235	28549253	1.59	[{'connected_gene': 'PPP1CB', 'score': 11.03}, {'connected_gene': 'ENSG00000230730', 'score': 10.79}, {'connected_gene': 'PLB1', 'score': 10.05}, {'connected_gene': 'TRMT61B', 'score': 6.0}, {'connected_gene': 'SPDYA', 'score': 1.48}, {'connected_gene': 'WDR43', 'score': 1.4}, {'connected_gene': 'SNRPGP7', 'score': 0.17}]
chr2	GH02I028747	28747490	28756800	2.76	[{'connected_gene': 'PPP1CB', 'score': 565.6}, {'connected_gene': 'LOC100505774', 'score': 550.77}, {'connected_gene': 'TRMT61B', 'score': 42.58}, {'connected_gene': 'TOGARAM2', 'score': 18.81}, {'connected_gene': 'SPDYA', 'score': 12.03}, {'connected_gene': 'ENSG00000230730', 'score': 10.17}, {'connected_gene': 'WDR43', 'score': 5.32}, {'connected_gene': 'FOSL2', 'score': 2.94}]
chr2	GH02I028809	28809915	28811344	1.62	[{'connected_gene': 'SPDYA', 'score': 562.1}, {'connected_gene': 'ENSG00000273233', 'score': 550.77}, {'connected_gene': 'TRMT61B', 'score': 11.38}, {'connected_gene': 'TOGARAM2', 'score': 10.65}]
chr2	GH02I028832	28832232	28832477	0.24	[{'connected_gene': 'SPDYA', 'score': 1.9}, {'connected_gene': 'ENSG00000273233', 'score': 0.34}, {'connected_gene': 'TRMT61B', 'score': 0.28}]
chr2	GH02I028358	28358369	28362339	1.75	[{'connected_gene': 'FOSL2', 'score': 41.17}, {'connected_gene': 'EIF2B4', 'score': 14.21}, {'connected_gene': 'LOC100505716', 'score': 13.18}, {'connected_gene': 'FLJ31356', 'score': 12.37}, {'connected_gene': 'TRMT61B', 'score': 11.48}, {'connected_gene': 'WDR43', 'score': 10.96}, {'connected_gene': 'GPN1', 'score': 10.93}, {'connected_gene': 'RBKS', 'score': 10.71}, {'connected_gene': 'SUPT7L', 'score': 10.66}, {'connected_gene': 'ZNF512', 'score': 10.14}, {'connected_gene': 'PPP1CB', 'score': 2.92}, {'connected_gene': 'LOC105374382', 'score': 0.77}, {'connected_gene': 'LOC105374383', 'score': 0.37}]
chr2	GH02I028893	28893801	28897204	2.09	[{'connected_gene': 'WDR43', 'score': 559.49}, {'connected_gene': 'TOGARAM2', 'score': 30.86}, {'connected_gene': 'TRMT61B', 'score': 14.83}, {'connected_gene': 'GC02P028913', 'score': 0.37}]
chr2	GH02I028950	28950397	28953400	1.34	[{'connected_gene': 'TOGARAM2', 'score': 19.88}, {'connected_gene': 'TRMT61B', 'score': 13.97}, {'connected_gene': 'WDR43', 'score': 8.61}, {'connected_gene': 'PPP1CB', 'score': 1.65}, {'connected_gene': 'SNORD53B', 'score': 0.34}]
chr2	GH02I028955	28955995	28957000	0.94	[{'connected_gene': 'TOGARAM2', 'score': 570.02}, {'connected_gene': 'TRMT61B', 'score': 13.86}, {'connected_gene': 'SNORD53B', 'score': 0.31}]
chr2	GH02I029008	29008690	29018479	1.12	[{'connected_gene': 'TOGARAM2', 'score': 28.27}, {'connected_gene': 'C2orf71', 'score': 5.39}, {'connected_gene': 'PPP1CB', 'score': 5.32}, {'connected_gene': 'TRMT61B', 'score': 4.55}, {'connected_gene': 'ENSG00000200283', 'score': 0.26}, {'connected_gene': 'LOC105374385', 'score': 0.23}]
chr2	GH02I028926	28926136	28929067	0.49	[{'connected_gene': 'SNORD53B', 'score': 550.77}, {'connected_gene': 'GC02P028935', 'score': 550.77}, {'connected_gene': 'GC02P028933', 'score': 550.77}, {'connected_gene': 'GC02P028930', 'score': 550.77}, {'connected_gene': 'SNORD53', 'score': 550.77}, {'connected_gene': 'ENSG00000222224', 'score': 550.77}, {'connected_gene': 'TRMT61B', 'score': 29.97}, {'connected_gene': 'WDR43', 'score': 18.27}]
chr2	GH02I028660	28659666	28666102	1.31	[{'connected_gene': 'ENSG00000230730', 'score': 570.8}, {'connected_gene': 'SUPT7L', 'score': 13.51}, {'connected_gene': 'TRMT61B', 'score': 5.39}, {'connected_gene': 'PPP1CB', 'score': 5.13}, {'connected_gene': 'PLB1', 'score': 4.79}, {'connected_gene': 'SNRPGP7', 'score': 0.08}]
chr2	GH02I028609	28609502	28616114	1.63	[{'connected_gene': 'ENSG00000230730', 'score': 33.96}, {'connected_gene': 'SUPT7L', 'score': 19.13}, {'connected_gene': 'PPP1CB', 'score': 16.86}, {'connected_gene': 'LOC100505774', 'score': 11.02}, {'connected_gene': 'SPDYA', 'score': 10.4}, {'connected_gene': 'PLB1', 'score': 8.51}, {'connected_gene': 'TRMT61B', 'score': 2.6}, {'connected_gene': 'SNRPGP7', 'score': 0.1}]
chr2	GH02I028651	28651980	28656295	0.83	[{'connected_gene': 'ENSG00000230730', 'score': 18.98}, {'connected_gene': 'PPP1CB', 'score': 15.91}, {'connected_gene': 'LOC100505774', 'score': 11.32}, {'connected_gene': 'TRMT61B', 'score': 5.37}, {'connected_gene': 'PLB1', 'score': 4.45}, {'connected_gene': 'SNRPGP7', 'score': 0.08}]
chr2	GH02I028617	28617645	28628863	1.71	[{'connected_gene': 'ENSG00000230730', 'score': 33.4}, {'connected_gene': 'PPP1CB', 'score': 12.56}, {'connected_gene': 'LOC100505774', 'score': 11.18}, {'connected_gene': 'PLB1', 'score': 10.73}, {'connected_gene': 'TRMT61B', 'score': 5.74}, {'connected_gene': 'FOSL2', 'score': 4.04}, {'connected_gene': 'SNRPGP7', 'score': 0.1}]