PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000313833	[[55738020, 55738255], [55817098, 55820327]]	[[55817108, 55819244]]
ENST00000554940	[[55738140, 55738255], [55817120, 55817582]]	None
ENST00000555087	[[55738871, 55739023], [55817098, 55817558]]	None
ENST00000440021	[[55738871, 55738999], [55817098, 55819801]]	[[55817108, 55819244]]
ENST00000557647	[[55738928, 55738999], [55784900, 55784987], [55817098, 55817268], [55821218, 55821303], [55821781, 55821802]]	None
ENST00000555280	[[55817506, 55819588], [55821218, 55821303], [55821781, 55821940], [55828450, 55828636]]	[[55817510, 55819244]]
NM_017943	[[55738020, 55738255], [55817098, 55820329]]	[[55817108, 55819244]]
NM_152231	[[55738871, 55738999], [55817098, 55819801]]	[[55817108, 55819244]]

Promoter

Chrom	Start	End	Description
chr14	55738082	55738176	CAGE_peak_1_at_FBXO34_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I055249	55249476	55249756	0.43	[{'connected_gene': 'FBXO34', 'score': 11.84}, {'connected_gene': 'COX5AP1', 'score': 0.44}, {'connected_gene': 'GC14M054989', 'score': 0.05}]
chr14	GH14I055245	55245823	55245932	0.54	[{'connected_gene': 'FBXO34', 'score': 11.82}, {'connected_gene': 'COX5AP1', 'score': 0.77}, {'connected_gene': 'GC14M054989', 'score': 0.05}]
chr14	GH14I055070	55070602	55079189	1.57	[{'connected_gene': 'LGALS3', 'score': 18.85}, {'connected_gene': 'LOC105370509', 'score': 18.6}, {'connected_gene': 'MAPK1IP1L', 'score': 16.83}, {'connected_gene': 'FBXO34', 'score': 5.07}, {'connected_gene': 'ATG14', 'score': 2.33}, {'connected_gene': 'GC14M055058', 'score': 0.37}, {'connected_gene': 'GC14M055059', 'score': 0.37}, {'connected_gene': 'GC14M054989', 'score': 0.03}]
chr14	GH14I055097	55097057	55109751	1.83	[{'connected_gene': 'LGALS3', 'score': 40.72}, {'connected_gene': 'LOC105370509', 'score': 34.62}, {'connected_gene': 'MAPK1IP1L', 'score': 25.39}, {'connected_gene': 'ATG14', 'score': 16.8}, {'connected_gene': 'SOCS4', 'score': 13.23}, {'connected_gene': 'GCH1', 'score': 12.33}, {'connected_gene': 'DLGAP5', 'score': 11.3}, {'connected_gene': 'FBXO34', 'score': 8.13}, {'connected_gene': 'ENSG00000259318', 'score': 5.61}, {'connected_gene': 'GC14M055058', 'score': 0.26}, {'connected_gene': 'GC14M055059', 'score': 0.26}, {'connected_gene': 'GC14M054989', 'score': 0.04}]
chr14	GH14I055113	55113140	55134826	2.73	[{'connected_gene': 'LGALS3', 'score': 578.57}, {'connected_gene': 'LOC105370509', 'score': 40.15}, {'connected_gene': 'GCH1', 'score': 11.0}, {'connected_gene': 'FBXO34', 'score': 10.91}, {'connected_gene': 'DLGAP5', 'score': 10.77}, {'connected_gene': 'ATG14', 'score': 6.91}, {'connected_gene': 'ENSG00000259318', 'score': 5.86}, {'connected_gene': 'MAPK1IP1L', 'score': 3.36}, {'connected_gene': 'GC14M055058', 'score': 0.21}, {'connected_gene': 'GC14M055059', 'score': 0.21}, {'connected_gene': 'GC14M054989', 'score': 0.05}]
chr14	GH14I054848	54848034	54848155	0.24	[{'connected_gene': 'GCH1', 'score': 8.1}, {'connected_gene': 'MAPK1IP1L', 'score': 2.57}, {'connected_gene': 'FBXO34', 'score': 2.29}, {'connected_gene': 'LGALS3', 'score': 2.12}, {'connected_gene': 'GMFB', 'score': 1.94}, {'connected_gene': 'GC14P054860', 'score': 0.39}, {'connected_gene': 'PIR45415', 'score': 0.2}]
chr14	GH14I055265	55265254	55265580	0.84	[{'connected_gene': 'GCH1', 'score': 11.11}, {'connected_gene': 'FBXO34', 'score': 8.4}, {'connected_gene': 'LGALS3', 'score': 2.38}, {'connected_gene': 'MAPK1IP1L', 'score': 1.86}, {'connected_gene': 'LOC105370509', 'score': 0.44}, {'connected_gene': 'COX5AP1', 'score': 0.34}, {'connected_gene': 'GC14M054989', 'score': 0.06}]
chr14	GH14I054908	54908102	54908771	0.9	[{'connected_gene': 'GCH1', 'score': 12.62}, {'connected_gene': 'ATG14', 'score': 4.82}, {'connected_gene': 'GMFB', 'score': 4.31}, {'connected_gene': 'LGALS3', 'score': 2.72}, {'connected_gene': 'FBXO34', 'score': 2.33}, {'connected_gene': 'MAPK1IP1L', 'score': 1.66}, {'connected_gene': 'GC14P054912', 'score': 0.77}]
chr14	GH14I054782	54782401	54786078	1.37	[{'connected_gene': 'SAMD4A', 'score': 11.58}, {'connected_gene': 'GCH1', 'score': 10.07}, {'connected_gene': 'WDHD1', 'score': 4.17}, {'connected_gene': 'GMFB', 'score': 3.02}, {'connected_gene': 'FBXO34', 'score': 2.38}, {'connected_gene': 'LGALS3', 'score': 2.23}, {'connected_gene': 'MAPK1IP1L', 'score': 1.26}, {'connected_gene': 'PIR45415', 'score': 0.44}, {'connected_gene': 'GC14P054860', 'score': 0.19}]
chr14	GH14I055373	55373324	55375213	1.02	[{'connected_gene': 'LOC105370509', 'score': 25.25}, {'connected_gene': 'DLGAP5', 'score': 10.6}, {'connected_gene': 'ATG14', 'score': 3.32}, {'connected_gene': 'FBXO34', 'score': 3.23}, {'connected_gene': 'MAPK1IP1L', 'score': 1.83}, {'connected_gene': 'PIR34697', 'score': 0.44}, {'connected_gene': 'PIR35307', 'score': 0.44}, {'connected_gene': 'GC14M054989', 'score': 0.08}]
chr14	GH14I055270	55270665	55275600	2.09	[{'connected_gene': 'LOC105370509', 'score': 599.29}, {'connected_gene': 'FBXO34', 'score': 550.77}, {'connected_gene': 'LGALS3', 'score': 14.63}, {'connected_gene': 'ENSG00000259318', 'score': 5.84}, {'connected_gene': 'RPL34P28', 'score': 0.44}, {'connected_gene': 'GC14M054989', 'score': 0.06}]
chr14	GH14I055301	55301202	55305399	1.2	[{'connected_gene': 'LOC105370509', 'score': 43.57}, {'connected_gene': 'FBXO34', 'score': 12.68}, {'connected_gene': 'ENSG00000259318', 'score': 5.56}, {'connected_gene': 'GCH1', 'score': 5.11}, {'connected_gene': 'LGALS3', 'score': 3.16}, {'connected_gene': 'MAPK1IP1L', 'score': 2.52}, {'connected_gene': 'CHMP4BP1', 'score': 0.77}, {'connected_gene': 'ENSG00000258455', 'score': 0.28}, {'connected_gene': 'GC14M054989', 'score': 0.06}]
chr14	GH14I055332	55332111	55335693	0.89	[{'connected_gene': 'LOC105370509', 'score': 43.49}, {'connected_gene': 'FBXO34', 'score': 6.47}, {'connected_gene': 'ENSG00000259318', 'score': 5.62}, {'connected_gene': 'ENSG00000258455', 'score': 0.44}, {'connected_gene': 'CHMP4BP1', 'score': 0.28}, {'connected_gene': 'GC14M054989', 'score': 0.07}]
chr14	GH14I055353	55353189	55355352	0.6	[{'connected_gene': 'LOC105370509', 'score': 43.45}, {'connected_gene': 'ENSG00000259318', 'score': 5.68}, {'connected_gene': 'PIR42744', 'score': 0.77}, {'connected_gene': 'PIR52112', 'score': 0.39}, {'connected_gene': 'FBXO34', 'score': 0.18}, {'connected_gene': 'GC14M054989', 'score': 0.07}]
chr14	GH14I055326	55326964	55327455	0.46	[{'connected_gene': 'LOC105370509', 'score': 43.49}, {'connected_gene': 'ENSG00000259318', 'score': 5.68}, {'connected_gene': 'ENSG00000258455', 'score': 0.39}, {'connected_gene': 'CHMP4BP1', 'score': 0.31}, {'connected_gene': 'FBXO34', 'score': 0.22}, {'connected_gene': 'GC14M054989', 'score': 0.07}]
chr14	GH14I055315	55315687	55319669	0.59	[{'connected_gene': 'LOC105370509', 'score': 43.52}, {'connected_gene': 'ENSG00000259318', 'score': 5.59}, {'connected_gene': 'CHMP4BP1', 'score': 0.37}, {'connected_gene': 'ENSG00000258455', 'score': 0.34}, {'connected_gene': 'FBXO34', 'score': 0.25}, {'connected_gene': 'GC14M054989', 'score': 0.07}]
chr14	GH14I055310	55310298	55311813	0.2	[{'connected_gene': 'LOC105370509', 'score': 14.42}, {'connected_gene': 'ENSG00000259318', 'score': 5.58}, {'connected_gene': 'CHMP4BP1', 'score': 0.39}, {'connected_gene': 'ENSG00000258455', 'score': 0.31}, {'connected_gene': 'FBXO34', 'score': 0.28}, {'connected_gene': 'GC14M054989', 'score': 0.07}]
chr14	GH14I055336	55336059	55338761	0.49	[{'connected_gene': 'LOC105370509', 'score': 12.98}, {'connected_gene': 'ENSG00000259318', 'score': 5.63}, {'connected_gene': 'ENSG00000258455', 'score': 0.77}, {'connected_gene': 'CHMP4BP1', 'score': 0.28}, {'connected_gene': 'FBXO34', 'score': 0.2}, {'connected_gene': 'GC14M054989', 'score': 0.07}]
chr14	GH14I055277	55277125	55278946	0.82	[{'connected_gene': 'LOC105370509', 'score': 14.07}, {'connected_gene': 'RPL34P28', 'score': 0.77}, {'connected_gene': 'FBXO34', 'score': 0.44}, {'connected_gene': 'GC14M054989', 'score': 0.06}]
chr14	GH14I055311	55310216	55310292	0.2	[{'connected_gene': 'CHMP4BP1', 'score': 0.39}, {'connected_gene': 'ENSG00000258455', 'score': 0.31}, {'connected_gene': 'FBXO34', 'score': 0.28}, {'connected_gene': 'GC14M054989', 'score': 0.06}]
chr14	GH14I055297	55297801	55298798	0.77	[{'connected_gene': 'CHMP4BP1', 'score': 550.77}, {'connected_gene': 'LOC105370509', 'score': 43.59}, {'connected_gene': 'FBXO34', 'score': 12.01}, {'connected_gene': 'DLGAP5', 'score': 10.61}, {'connected_gene': 'ENSG00000259318', 'score': 5.56}, {'connected_gene': 'ENSG00000278818', 'score': 0.39}, {'connected_gene': 'GC14M054989', 'score': 0.06}]
chr14	GH14I055299	55299221	55299570	0.22	[{'connected_gene': 'CHMP4BP1', 'score': 550.77}, {'connected_gene': 'LOC105370509', 'score': 13.96}, {'connected_gene': 'GCH1', 'score': 1.45}, {'connected_gene': 'FBXO34', 'score': 0.31}, {'connected_gene': 'ENSG00000258455', 'score': 0.26}, {'connected_gene': 'GC14M054989', 'score': 0.06}]
chr14	GH14I055357	55357043	55357192	0.66	[{'connected_gene': 'PIR52112', 'score': 0.44}, {'connected_gene': 'PIR42744', 'score': 0.44}, {'connected_gene': 'FBXO34', 'score': 0.17}, {'connected_gene': 'GC14M054989', 'score': 0.08}]
chr14	GH14I055349	55349041	55349349	0.38	[{'connected_gene': 'PIR42744', 'score': 550.77}, {'connected_gene': 'LOC105370509', 'score': 22.36}, {'connected_gene': 'ENSG00000259318', 'score': 5.67}, {'connected_gene': 'ENSG00000258455', 'score': 0.44}, {'connected_gene': 'FBXO34', 'score': 0.18}, {'connected_gene': 'GC14M054989', 'score': 0.07}]
chr14	GH14I055306	55306454	55307497	0.63	[{'connected_gene': 'ENSG00000259318', 'score': 5.57}, {'connected_gene': 'CHMP4BP1', 'score': 0.44}, {'connected_gene': 'ENSG00000258455', 'score': 0.29}, {'connected_gene': 'FBXO34', 'score': 0.28}, {'connected_gene': 'GC14M054989', 'score': 0.06}]