PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000222803	[[30050202, 30054509], [30058611, 30058739], [30062280, 30062432], [30065927, 30066300]]	[[30054350, 30054509], [30058611, 30058739], [30062280, 30062432], [30065927, 30066124]]
ENST00000419018	[[30053903, 30054509], [30058611, 30058739], [30065927, 30066278]]	[[30058735, 30058739], [30065927, 30066124]]
ENST00000412494	[[30054286, 30054509], [30058611, 30058739], [30059828, 30059920], [30062280, 30062432], [30065927, 30066035]]	[[30059912, 30059920], [30062280, 30062432], [30065927, 30066035]]
ENST00000479939	[[30062006, 30062432], [30065927, 30066252]]	None
NR_046478	[[30050198, 30054509], [30058611, 30058739], [30059828, 30059920], [30062280, 30062432], [30065927, 30066417]]	None
NM_017946	[[30050198, 30054509], [30058611, 30058739], [30062280, 30062432], [30065927, 30066417]]	[[30054350, 30054509], [30058611, 30058739], [30062280, 30062432], [30065927, 30066124]]
NR_046479	[[30050198, 30054509], [30058611, 30058739], [30065927, 30066417]]	None

Promoter

Chrom	Start	End	Description
chr7	30066233	30066332	CAGE_peak_1_at_FKBP14_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I029975	29975380	29975439	0.61	[{'connected_gene': 'SCRN1', 'score': 550.39}, {'connected_gene': 'PLEKHA8', 'score': 11.61}, {'connected_gene': 'FKBP14', 'score': 11.61}, {'connected_gene': 'ENSG00000238906', 'score': 10.25}, {'connected_gene': 'PIR51591', 'score': 0.44}, {'connected_gene': 'LOC105375215', 'score': 0.39}]
chr7	GH07I029956	29956064	29956600	0.91	[{'connected_gene': 'SCRN1', 'score': 12.63}, {'connected_gene': 'LOC105375215', 'score': 12.63}, {'connected_gene': 'PLEKHA8', 'score': 11.12}, {'connected_gene': 'FKBP14', 'score': 11.12}, {'connected_gene': 'ENSG00000238906', 'score': 11.02}, {'connected_gene': 'ENSG00000231519', 'score': 10.59}, {'connected_gene': 'PIR51591', 'score': 0.39}, {'connected_gene': 'PIR47202', 'score': 0.28}]
chr7	GH07I030025	30025338	30030661	2.09	[{'connected_gene': 'PLEKHA8', 'score': 567.82}, {'connected_gene': 'FKBP14', 'score': 550.77}, {'connected_gene': 'SCRN1', 'score': 22.4}, {'connected_gene': 'ENSG00000226874', 'score': 11.78}, {'connected_gene': 'ENSG00000263683', 'score': 11.74}, {'connected_gene': 'LOC105375215', 'score': 11.19}, {'connected_gene': 'DKFZP586I1420', 'score': 10.19}, {'connected_gene': 'ENSG00000231519', 'score': 0.25}]
chr7	GH07I029977	29977658	29978236	0.31	[{'connected_gene': 'PLEKHA8', 'score': 11.28}, {'connected_gene': 'FKBP14', 'score': 11.28}, {'connected_gene': 'PIR51591', 'score': 0.44}, {'connected_gene': 'LOC105375215', 'score': 0.44}, {'connected_gene': 'SCRN1', 'score': 0.39}]
chr7	GH07I030232	30232475	30232756	0.24	[{'connected_gene': 'PLEKHA8', 'score': 10.04}, {'connected_gene': 'FKBP14', 'score': 10.04}, {'connected_gene': 'NOD1', 'score': 9.9}, {'connected_gene': 'ZNRF2', 'score': 5.59}, {'connected_gene': 'GC07M030247', 'score': 0.37}, {'connected_gene': 'LOC105375217', 'score': 0.25}]
chr7	GH07I029619	29619837	29620082	0.68	[{'connected_gene': 'PRR15', 'score': 18.06}, {'connected_gene': 'PLEKHA8', 'score': 13.88}, {'connected_gene': 'ENSG00000264520', 'score': 13.44}, {'connected_gene': 'FKBP14', 'score': 13.09}, {'connected_gene': 'ENSG00000223813', 'score': 10.8}, {'connected_gene': 'ENSG00000226874', 'score': 9.72}, {'connected_gene': 'ZNRF2P2', 'score': 4.72}, {'connected_gene': 'TMSB4XP3', 'score': 0.44}]
chr7	GH07I029976	29976271	29977200	0.69	[{'connected_gene': 'MTURN', 'score': 14.12}, {'connected_gene': 'PLEKHA8', 'score': 11.61}, {'connected_gene': 'FKBP14', 'score': 11.61}, {'connected_gene': 'ENSG00000238906', 'score': 10.25}, {'connected_gene': 'ENSG00000223813', 'score': 7.76}, {'connected_gene': 'PIR51591', 'score': 0.44}, {'connected_gene': 'SCRN1', 'score': 0.39}, {'connected_gene': 'LOC105375215', 'score': 0.39}]
chr7	GH07I030067	30067861	30069047	0.46	[{'connected_gene': 'MTURN', 'score': 13.61}, {'connected_gene': 'PLEKHA8', 'score': 10.84}, {'connected_gene': 'FKBP14', 'score': 10.84}, {'connected_gene': 'SCRN1', 'score': 10.65}, {'connected_gene': 'LOC105375215', 'score': 10.64}, {'connected_gene': 'ENSG00000231519', 'score': 0.44}]
chr7	GH07I029193	29193446	29196771	2.32	[{'connected_gene': 'CHN2', 'score': 563.79}, {'connected_gene': 'GC07M029191', 'score': 550.77}, {'connected_gene': 'CPVL', 'score': 550.77}, {'connected_gene': 'FKBP14', 'score': 10.89}, {'connected_gene': 'PLEKHA8', 'score': 10.33}]
chr7	GH07I030726	30726391	30728203	1.04	[{'connected_gene': 'LOC105375219', 'score': 550.77}, {'connected_gene': 'CRHR2', 'score': 27.64}, {'connected_gene': 'ENSG00000264520', 'score': 22.61}, {'connected_gene': 'PLEKHA8', 'score': 21.81}, {'connected_gene': 'FKBP14', 'score': 13.07}, {'connected_gene': 'ENSG00000226874', 'score': 9.78}, {'connected_gene': 'ENSG00000223419', 'score': 0.37}, {'connected_gene': 'LOC105375220', 'score': 0.31}, {'connected_gene': 'INMT', 'score': 0.31}]
chr7	GH07I029953	29953384	29954420	0.31	[{'connected_gene': 'LOC105375215', 'score': 12.63}, {'connected_gene': 'SCRN1', 'score': 12.61}, {'connected_gene': 'MTURN', 'score': 11.4}, {'connected_gene': 'PLEKHA8', 'score': 11.12}, {'connected_gene': 'FKBP14', 'score': 11.12}, {'connected_gene': 'ENSG00000238906', 'score': 11.02}, {'connected_gene': 'ENSG00000231519', 'score': 10.59}, {'connected_gene': 'PIR51591', 'score': 0.37}, {'connected_gene': 'PIR47202', 'score': 0.28}]
chr7	GH07I029722	29722621	29724177	1.06	[{'connected_gene': 'NOD1', 'score': 15.26}, {'connected_gene': 'ENSG00000226874', 'score': 11.93}, {'connected_gene': 'PLEKHA8', 'score': 10.55}, {'connected_gene': 'FKBP14', 'score': 9.71}, {'connected_gene': 'LOC101928208', 'score': 0.77}, {'connected_gene': 'DPY19L2P3', 'score': 0.19}, {'connected_gene': 'WIPF3', 'score': 0.18}]
chr7	GH07I029684	29684000	29686264	1.36	[{'connected_gene': 'ZNRF2P2', 'score': 569.6}, {'connected_gene': 'LOC646762', 'score': 550.77}, {'connected_gene': 'ENSG00000223813', 'score': 16.51}, {'connected_gene': 'DPY19L2P3', 'score': 13.17}, {'connected_gene': 'FKBP14', 'score': 13.08}, {'connected_gene': 'ENSG00000264520', 'score': 10.84}, {'connected_gene': 'PLEKHA8', 'score': 10.37}, {'connected_gene': 'PRR15', 'score': 6.34}, {'connected_gene': 'MIR550A3', 'score': 0.77}]
chr7	GH07I030023	30023401	30023600	0.54	[{'connected_gene': 'RPS27P16', 'score': 15.82}, {'connected_gene': 'MTURN', 'score': 14.15}, {'connected_gene': 'FKBP14', 'score': 0.77}, {'connected_gene': 'SCRN1', 'score': 0.29}, {'connected_gene': 'LOC105375215', 'score': 0.28}]
chr7	GH07I029968	29968437	29969307	0.38	[{'connected_gene': 'PIR51591', 'score': 550.77}, {'connected_gene': 'SCRN1', 'score': 12.57}, {'connected_gene': 'PLEKHA8', 'score': 11.6}, {'connected_gene': 'FKBP14', 'score': 11.6}, {'connected_gene': 'ENSG00000238906', 'score': 10.84}, {'connected_gene': 'PIR47202', 'score': 0.23}]
chr7	GH07I029883	29883530	29885025	0.69	[{'connected_gene': 'ENSG00000238906', 'score': 11.87}, {'connected_gene': 'ENSG00000231519', 'score': 10.21}, {'connected_gene': 'PLEKHA8', 'score': 9.91}, {'connected_gene': 'FKBP14', 'score': 9.91}, {'connected_gene': 'GC07P029912', 'score': 0.31}, {'connected_gene': 'WIPF3', 'score': 0.18}]
chr7	GH07I029881	29881865	29882087	0.31	[{'connected_gene': 'ENSG00000238906', 'score': 11.85}, {'connected_gene': 'ENSG00000231519', 'score': 10.21}, {'connected_gene': 'PLEKHA8', 'score': 9.91}, {'connected_gene': 'FKBP14', 'score': 9.91}, {'connected_gene': 'GC07P029912', 'score': 0.29}, {'connected_gene': 'WIPF3', 'score': 0.18}]
chr7	GH07I030116	30116377	30117684	0.71	[{'connected_gene': 'ENSG00000283618', 'score': 550.77}, {'connected_gene': 'PLEKHA8', 'score': 20.92}, {'connected_gene': 'ENSG00000231519', 'score': 11.06}, {'connected_gene': 'FKBP14', 'score': 10.37}, {'connected_gene': 'LOC105375216', 'score': 0.37}]
chr7	GH07I030593	30593344	30598963	2.31	[{'connected_gene': 'ENSG00000196295', 'score': 622.52}, {'connected_gene': 'GARS', 'score': 550.77}, {'connected_gene': 'GC07M030589', 'score': 550.77}, {'connected_gene': 'ZNRF2P2', 'score': 15.84}, {'connected_gene': 'ENSG00000244480', 'score': 13.74}, {'connected_gene': 'FKBP14', 'score': 13.06}, {'connected_gene': 'ENSG00000264520', 'score': 11.01}, {'connected_gene': 'PLEKHA8', 'score': 10.34}, {'connected_gene': 'CRHR2', 'score': 5.01}, {'connected_gene': 'PIR57163', 'score': 0.77}]
chr7	GH07I030520	30520069	30528011	1.06	[{'connected_gene': 'ENSG00000264520', 'score': 565.28}, {'connected_gene': 'ENSG00000244480', 'score': 555.45}, {'connected_gene': 'ENSG00000196295', 'score': 50.58}, {'connected_gene': 'NOD1', 'score': 11.15}, {'connected_gene': 'FKBP14', 'score': 10.9}, {'connected_gene': 'PLEKHA8', 'score': 10.34}, {'connected_gene': 'LOC100287825', 'score': 0.44}, {'connected_gene': 'GGCT', 'score': 0.37}, {'connected_gene': 'ENSG00000281039', 'score': 0.31}]