PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000238994	[[93388198, 93390623], [93392712, 93392811]]	[[93389683, 93390623], [93392712, 93392726]]
NM_005398	[[93388197, 93390623], [93392712, 93392858]]	[[93389683, 93390623], [93392712, 93392726]]

Promoter

Chrom	Start	End	Description
chr10	93390550	93390566	CAGE_peak_3_at_PPP1R3C_5end
chr10	93392811	93392835	CAGE_peak_1_at_PPP1R3C_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I091711	91711836	91712696	0.38	[{'connected_gene': 'TNKS2', 'score': 16.92}, {'connected_gene': 'PPP1R3C', 'score': 10.28}, {'connected_gene': 'GC10M091739', 'score': 0.28}, {'connected_gene': 'GAPDHP28', 'score': 0.26}]
chr10	GH10I091621	91621295	91622510	0.46	[{'connected_gene': 'TNKS2', 'score': 6.6}, {'connected_gene': 'PPP1R3C', 'score': 0.39}, {'connected_gene': 'HECTD2-AS1', 'score': 0.39}]
chr10	GH10I091602	91602451	91606493	1.42	[{'connected_gene': 'PPP1R3C', 'score': 21.27}, {'connected_gene': 'BTAF1', 'score': 11.52}, {'connected_gene': 'TNKS2', 'score': 8.1}, {'connected_gene': 'HECTD2', 'score': 6.73}, {'connected_gene': 'HECTD2-AS1', 'score': 0.44}, {'connected_gene': 'LOC105378433', 'score': 0.23}]
chr10	GH10I091541	91541187	91542333	0.73	[{'connected_gene': 'PPP1R3C', 'score': 20.5}, {'connected_gene': 'RPS27P1', 'score': 0.77}, {'connected_gene': 'HECTD2-AS1', 'score': 0.2}, {'connected_gene': 'ENSG00000271385', 'score': 0.18}]
chr10	GH10I091540	91540681	91540985	0.69	[{'connected_gene': 'PPP1R3C', 'score': 10.45}, {'connected_gene': 'RPS27P1', 'score': 0.77}, {'connected_gene': 'HECTD2-AS1', 'score': 0.19}, {'connected_gene': 'ENSG00000271385', 'score': 0.18}]
chr10	GH10I091595	91595884	91599591	1.21	[{'connected_gene': 'PPP1R3C', 'score': 22.18}, {'connected_gene': 'HECTD2', 'score': 6.33}, {'connected_gene': 'TNKS2', 'score': 6.16}, {'connected_gene': 'HECTD2-AS1', 'score': 0.39}, {'connected_gene': 'LOC105378433', 'score': 0.26}]
chr10	GH10I091671	91671502	91672987	1.03	[{'connected_gene': 'PPP1R3C', 'score': 10.84}, {'connected_gene': 'HECTD2', 'score': 7.4}, {'connected_gene': 'GAPDHP28', 'score': 0.77}, {'connected_gene': 'GC10M091739', 'score': 0.18}]
chr10	GH10I091551	91551055	91551138	0.2	[{'connected_gene': 'PPP1R3C', 'score': 10.58}, {'connected_gene': 'LOC105378433', 'score': 0.77}, {'connected_gene': 'RPS27P1', 'score': 0.44}, {'connected_gene': 'HECTD2-AS1', 'score': 0.21}]
chr10	GH10I091555	91555032	91559921	0.92	[{'connected_gene': 'PPP1R3C', 'score': 17.71}, {'connected_gene': 'LOC105378433', 'score': 0.77}, {'connected_gene': 'HECTD2-AS1', 'score': 0.23}]
chr10	GH10I091563	91563227	91563863	0.31	[{'connected_gene': 'PPP1R3C', 'score': 6.67}, {'connected_gene': 'LOC105378433', 'score': 0.39}, {'connected_gene': 'HECTD2-AS1', 'score': 0.25}]
chr10	GH10I091569	91569771	91569995	0.2	[{'connected_gene': 'PPP1R3C', 'score': 6.94}, {'connected_gene': 'LOC105378433', 'score': 0.37}, {'connected_gene': 'HECTD2-AS1', 'score': 0.26}]
chr10	GH10I091629	91629432	91634141	2.39	[{'connected_gene': 'PPP1R3C', 'score': 557.96}, {'connected_gene': 'TNKS2-AS1', 'score': 15.16}, {'connected_gene': 'HECTD2', 'score': 7.22}, {'connected_gene': 'TNKS2', 'score': 5.12}, {'connected_gene': 'HECTD2-AS1', 'score': 0.34}]
chr10	GH10I091627	91627824	91628200	0.89	[{'connected_gene': 'PPP1R3C', 'score': 0.44}, {'connected_gene': 'HECTD2-AS1', 'score': 0.37}]
chr10	GH10I091626	91626942	91627740	0.46	[{'connected_gene': 'PPP1R3C', 'score': 0.44}, {'connected_gene': 'HECTD2-AS1', 'score': 0.37}]
chr10	GH10I091625	91625001	91625663	0.31	[{'connected_gene': 'PPP1R3C', 'score': 0.44}, {'connected_gene': 'HECTD2-AS1', 'score': 0.39}]
chr10	GH10I091630	91626282	91626909	0.31	[{'connected_gene': 'PPP1R3C', 'score': 0.44}, {'connected_gene': 'HECTD2-AS1', 'score': 0.37}]
chr10	GH10I091628	91628801	91629000	0.51	[{'connected_gene': 'PPP1R3C', 'score': 0.77}, {'connected_gene': 'HECTD2-AS1', 'score': 0.37}]
chr10	GH10I091634	91634220	91634413	0.4	[{'connected_gene': 'PPP1R3C', 'score': 550.77}, {'connected_gene': 'GC10M091667', 'score': 0.29}]
chr10	GH10I091636	91635484	91635673	0.96	[{'connected_gene': 'PPP1R3C', 'score': 0.77}, {'connected_gene': 'GC10M091667', 'score': 0.29}]
chr10	GH10I091635	91635102	91635170	0.58	[{'connected_gene': 'PPP1R3C', 'score': 0.77}, {'connected_gene': 'GC10M091667', 'score': 0.29}]
chr10	GH10I091519	91519979	91521131	0.63	[{'connected_gene': 'HECTD2', 'score': 8.3}, {'connected_gene': 'PPP1R3C', 'score': 6.66}, {'connected_gene': 'RPS27P1', 'score': 0.34}, {'connected_gene': 'ENSG00000271385', 'score': 0.22}, {'connected_gene': 'HECTD2-AS1', 'score': 0.16}]
chr10	GH10I091615	91615750	91617942	1.2	[{'connected_gene': 'HECTD2', 'score': 7.61}, {'connected_gene': 'PPP1R3C', 'score': 6.9}, {'connected_gene': 'TNKS2-AS1', 'score': 4.63}, {'connected_gene': 'HECTD2-AS1', 'score': 0.44}]
chr10	GH10I091607	91607455	91610082	1.7	[{'connected_gene': 'HECTD2', 'score': 62.06}, {'connected_gene': 'RPP30', 'score': 59.23}, {'connected_gene': 'BTAF1', 'score': 55.96}, {'connected_gene': 'PPP1R3C', 'score': 23.58}, {'connected_gene': 'FGFBP3', 'score': 12.61}, {'connected_gene': 'TNKS2-AS1', 'score': 11.09}, {'connected_gene': 'MARK2P9', 'score': 9.75}, {'connected_gene': 'TNKS2', 'score': 6.52}, {'connected_gene': 'HECTD2-AS1', 'score': 0.77}, {'connected_gene': 'LOC105378433', 'score': 0.22}]
chr10	GH10I091587	91587553	91594885	1.79	[{'connected_gene': 'RPP30', 'score': 29.89}, {'connected_gene': 'BTAF1', 'score': 16.82}, {'connected_gene': 'HECTD2', 'score': 16.26}, {'connected_gene': 'TNKS2-AS1', 'score': 14.68}, {'connected_gene': 'PPP1R3C', 'score': 6.1}, {'connected_gene': 'TNKS2', 'score': 4.63}, {'connected_gene': 'HECTD2-AS1', 'score': 0.34}, {'connected_gene': 'LOC105378433', 'score': 0.28}]
chr10	GH10I091552	91551703	91553109	0.89	[{'connected_gene': 'LOC105378433', 'score': 550.77}, {'connected_gene': 'PPP1R3C', 'score': 17.45}, {'connected_gene': 'RPS27P1', 'score': 0.44}, {'connected_gene': 'HECTD2-AS1', 'score': 0.22}]
chr10	GH10I091642	91642806	91643511	0.63	[{'connected_gene': 'TNKS2-AS1', 'score': 16.25}, {'connected_gene': 'TNKS2', 'score': 13.26}, {'connected_gene': 'PPP1R3C', 'score': 0.39}, {'connected_gene': 'GC10M091667', 'score': 0.34}]
chr10	GH10I091651	91651549	91654435	0.84	[{'connected_gene': 'TNKS2-AS1', 'score': 16.21}, {'connected_gene': 'TNKS2', 'score': 13.36}, {'connected_gene': 'GC10M091667', 'score': 0.39}, {'connected_gene': 'PPP1R3C', 'score': 0.37}]
chr10	GH10I091581	91581644	91583348	0.76	[{'connected_gene': 'TNKS2-AS1', 'score': 13.54}, {'connected_gene': 'PPP1R3C', 'score': 10.49}, {'connected_gene': 'HECTD2', 'score': 4.31}, {'connected_gene': 'LOC105378433', 'score': 0.31}, {'connected_gene': 'HECTD2-AS1', 'score': 0.31}]
chr10	GH10I091610	91610231	91614947	1.48	[{'connected_gene': 'HECTD2-AS1', 'score': 550.77}, {'connected_gene': 'PPP1R3C', 'score': 24.62}, {'connected_gene': 'HECTD2', 'score': 11.25}, {'connected_gene': 'TNKS2', 'score': 8.92}, {'connected_gene': 'TNKS2-AS1', 'score': 8.57}]
chr10	GH10I091297	91297904	91299305	1.04	[{'connected_gene': 'GC10P091296', 'score': 550.77}, {'connected_gene': 'PPP1R3C', 'score': 11.12}, {'connected_gene': 'HECTD2', 'score': 0.14}]
chr10	GH10I092381	92381189	92382339	0.2	[{'connected_gene': 'ENSG00000252993', 'score': 10.3}, {'connected_gene': 'PPP1R3C', 'score': 4.03}, {'connected_gene': 'GC10P092357', 'score': 0.34}, {'connected_gene': 'MARK2P9', 'score': 0.28}, {'connected_gene': 'GC10M092263', 'score': 0.26}]