PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000394562	[[33738078, 33738946], [33747292, 33747400], [33749008, 33750087], [33757489, 33757611], [33759206, 33759276], [33759923, 33760215]]	[[33738356, 33738946], [33747292, 33747400], [33749008, 33750047]]
ENST00000304905	[[33738087, 33738946], [33747292, 33747400], [33749008, 33750087], [33759206, 33759543]]	[[33738356, 33738946], [33747292, 33747400], [33749008, 33750047]]
ENST00000452764	[[33738089, 33738946], [33747292, 33747400], [33749008, 33750087], [33759923, 33760302]]	[[33738356, 33738946], [33747292, 33747400], [33749008, 33750047]]
ENST00000460530	[[33738335, 33738946], [33747292, 33747400], [33747649, 33747784]]	None
ENST00000479326	[[33738386, 33738946], [33747292, 33747854]]	None
ENST00000447040	[[33749701, 33750087], [33759206, 33759276], [33759923, 33760218]]	[[33749701, 33750047]]
ENST00000445092	[[33749839, 33750087], [33757489, 33757632], [33759206, 33759276], [33759923, 33760164]]	[[33749839, 33750047]]
ENST00000428476	[[33758901, 33759093], [33759206, 33759276], [33759923, 33760184]]	None
NM_018042	[[33737940, 33738946], [33747292, 33747400], [33749008, 33750087], [33759206, 33759543]]	[[33738356, 33738946], [33747292, 33747400], [33749008, 33750047]]
NM_001289009	[[33737940, 33738946], [33747292, 33747400], [33749008, 33750087], [33759923, 33760195]]	[[33738356, 33738946], [33747292, 33747400], [33749008, 33750047]]

Promoter

Chrom	Start	End	Description
chr17	33759386	33759395	CAGE_peak_10_at_SLFN12_5end
chr17	33759464	33759477	CAGE_peak_3_at_SLFN12_5end
chr17	33759489	33759503	CAGE_peak_7_at_SLFN12_5end
chr17	33759509	33759538	CAGE_peak_2_at_SLFN12_5end
chr17	33759560	33759574	CAGE_peak_9_at_SLFN12_5end
chr17	33759580	33759595	CAGE_peak_4_at_SLFN12_5end
chr17	33760164	33760206	CAGE_peak_1_at_SLFN12_5end
chr17	33760269	33760280	CAGE_peak_8_at_SLFN12_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I035372	35372600	35375355	1.93	[{'connected_gene': 'SLFN11', 'score': 576.65}, {'connected_gene': 'LOC105371933', 'score': 550.77}, {'connected_gene': 'GC17M035325', 'score': 550.77}, {'connected_gene': 'LIG3', 'score': 30.48}, {'connected_gene': 'ZNF830', 'score': 21.09}, {'connected_gene': 'SLFN12', 'score': 18.69}, {'connected_gene': 'ENSG00000267102', 'score': 11.28}, {'connected_gene': 'ENSG00000267648', 'score': 10.52}, {'connected_gene': 'SLFN14', 'score': 9.96}, {'connected_gene': 'RFFL', 'score': 5.51}, {'connected_gene': 'E2F3P1', 'score': 5.41}, {'connected_gene': 'SLFN5', 'score': 4.72}, {'connected_gene': 'LOC729835', 'score': 0.77}]
chr17	GH17I035431	35431270	35434860	1.89	[{'connected_gene': 'SLFN12', 'score': 581.03}, {'connected_gene': 'ENSG00000267648', 'score': 24.5}, {'connected_gene': 'ZNF830', 'score': 13.69}, {'connected_gene': 'LIG3', 'score': 9.87}, {'connected_gene': 'ENSG00000267547', 'score': 7.97}, {'connected_gene': 'SLFN13', 'score': 6.44}, {'connected_gene': 'GC17M035431', 'score': 0.77}, {'connected_gene': 'ENSG00000267102', 'score': 0.34}]
chr17	GH17I035367	35367228	35369231	0.8	[{'connected_gene': 'SLFN12', 'score': 9.95}, {'connected_gene': 'LOC105371933', 'score': 0.77}, {'connected_gene': 'SLFN11', 'score': 0.44}, {'connected_gene': 'GC17M035325', 'score': 0.44}, {'connected_gene': 'GC17P035345', 'score': 0.34}]
chr17	GH17I035529	35529366	35532940	0.93	[{'connected_gene': 'SLFN5', 'score': 16.63}, {'connected_gene': 'AP2B1', 'score': 11.1}, {'connected_gene': 'SLFN13', 'score': 10.93}, {'connected_gene': 'NLE1', 'score': 9.8}, {'connected_gene': 'SLFN12L', 'score': 5.4}, {'connected_gene': 'RASL10B', 'score': 5.14}, {'connected_gene': 'SLFN12', 'score': 4.93}, {'connected_gene': 'CCL5', 'score': 4.74}, {'connected_gene': 'SLFN11', 'score': 4.43}, {'connected_gene': 'RFFL', 'score': 1.84}, {'connected_gene': 'GC17P035523', 'score': 0.44}]
chr17	GH17I035466	35466959	35469246	0.43	[{'connected_gene': 'SLFN12L', 'score': 10.84}, {'connected_gene': 'SLFN12', 'score': 7.96}, {'connected_gene': 'ENSG00000267648', 'score': 5.06}, {'connected_gene': 'TBC1D3H', 'score': 4.5}, {'connected_gene': 'ENSG00000267554', 'score': 0.77}, {'connected_gene': 'LOC100420061', 'score': 0.44}]
chr17	GH17I035377	35377401	35377600	0.38	[{'connected_gene': 'GC17M035377', 'score': 550.77}, {'connected_gene': 'LOC729835', 'score': 550.77}, {'connected_gene': 'SLFN12', 'score': 4.55}, {'connected_gene': 'GC17M035325', 'score': 0.77}]
chr17	GH17I035375	35375801	35376786	0.54	[{'connected_gene': 'GC17M035377', 'score': 550.77}, {'connected_gene': 'LOC729835', 'score': 550.77}, {'connected_gene': 'GC17M035325', 'score': 550.77}, {'connected_gene': 'SLFN12', 'score': 4.55}]
chr17	GH17I035981	35981316	35982719	1.35	[{'connected_gene': 'ENSG00000275431', 'score': 550.77}, {'connected_gene': 'CCL16', 'score': 550.77}, {'connected_gene': 'SLFN12', 'score': 5.12}, {'connected_gene': 'GC17M036105', 'score': 0.44}, {'connected_gene': 'GC17M036109', 'score': 0.44}]