PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000373055	[[38158089, 38158456], [38158576, 38158705], [38161581, 38161622], [38164576, 38164649], [38166107, 38166193], [38167425, 38167490], [38168923, 38169019], [38171112, 38171239], [38172649, 38172736], [38173993, 38175391]]	[[38158362, 38158456], [38158576, 38158705], [38161581, 38161622], [38164576, 38164649], [38166107, 38166193], [38167425, 38167490], [38168923, 38169019], [38171112, 38171239], [38172649, 38172736], [38173993, 38174038]]
ENST00000327331	[[38158152, 38158250], [38158347, 38158456], [38158576, 38158705], [38161581, 38161622], [38164576, 38164649], [38166107, 38166193], [38167425, 38167490], [38168923, 38169019], [38171112, 38171239], [38172649, 38172736], [38173993, 38175385]]	[[38158362, 38158456], [38158576, 38158705], [38161581, 38161622], [38164576, 38164649], [38166107, 38166193], [38167425, 38167490], [38168923, 38169019], [38171112, 38171239], [38172649, 38172736], [38173993, 38174038]]
NM_018101	[[38158072, 38158250], [38158347, 38158456], [38158576, 38158705], [38161581, 38161622], [38164576, 38164649], [38166107, 38166193], [38167425, 38167490], [38168923, 38169019], [38171112, 38171239], [38172649, 38172736], [38173993, 38175391]]	[[38158362, 38158456], [38158576, 38158705], [38161581, 38161622], [38164576, 38164649], [38166107, 38166193], [38167425, 38167490], [38168923, 38169019], [38171112, 38171239], [38172649, 38172736], [38173993, 38174038]]
NM_001256875	[[38158072, 38158456], [38158576, 38158705], [38161581, 38161622], [38164576, 38164649], [38166107, 38166193], [38167425, 38167490], [38168923, 38169019], [38171112, 38171239], [38172649, 38172736], [38173993, 38175391]]	[[38158362, 38158456], [38158576, 38158705], [38161581, 38161622], [38164576, 38164649], [38166107, 38166193], [38167425, 38167490], [38168923, 38169019], [38171112, 38171239], [38172649, 38172736], [38173993, 38174038]]

Promoter

Chrom	Start	End	Description
chr1	38158135	38158174	CAGE_peak_2_at_CDCA8_5end
chr1	38158178	38158237	CAGE_peak_1_at_CDCA8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I037552	37552818	37554929	2.08	[{'connected_gene': 'SNIP1', 'score': 624.04}, {'connected_gene': 'C1orf109', 'score': 51.41}, {'connected_gene': 'SF3A3', 'score': 49.07}, {'connected_gene': 'GNL2', 'score': 42.15}, {'connected_gene': 'FTH1P1', 'score': 30.46}, {'connected_gene': 'YRDC', 'score': 19.59}, {'connected_gene': 'INPP5B', 'score': 15.78}, {'connected_gene': 'CDCA8', 'score': 10.18}, {'connected_gene': 'ZC3H12A', 'score': 10.16}, {'connected_gene': 'RSPO1', 'score': 5.68}, {'connected_gene': 'LINC01137', 'score': 4.49}, {'connected_gene': 'GC01P037546', 'score': 0.44}]
chr1	GH01I037574	37574213	37578162	0.56	[{'connected_gene': 'DNALI1', 'score': 16.38}, {'connected_gene': 'MEAF6', 'score': 13.76}, {'connected_gene': 'CDCA8', 'score': 10.25}, {'connected_gene': 'C1orf109', 'score': 10.25}, {'connected_gene': 'RSPO1', 'score': 5.78}, {'connected_gene': 'GNL2', 'score': 0.37}]
chr1	GH01I037605	37605715	37607000	0.38	[{'connected_gene': 'DNALI1', 'score': 24.06}, {'connected_gene': 'CDCA8', 'score': 10.69}, {'connected_gene': 'C1orf109', 'score': 10.69}, {'connected_gene': 'SNIP1', 'score': 10.4}, {'connected_gene': 'RPS27P9', 'score': 10.4}, {'connected_gene': 'ENSG00000233728', 'score': 9.3}, {'connected_gene': 'ENSG00000284748', 'score': 0.39}, {'connected_gene': 'RSPO1', 'score': 0.31}]
chr1	GH01I037556	37556395	37557946	1.79	[{'connected_gene': 'DNALI1', 'score': 566.77}, {'connected_gene': 'GC01P037558', 'score': 550.77}, {'connected_gene': 'RPS27P9', 'score': 550.77}, {'connected_gene': 'GNL2', 'score': 35.97}, {'connected_gene': 'MEAF6', 'score': 13.98}, {'connected_gene': 'CDCA8', 'score': 10.08}, {'connected_gene': 'C1orf109', 'score': 10.08}, {'connected_gene': 'LINC01137', 'score': 4.47}]
chr1	GH01I037688	37688686	37693558	2.11	[{'connected_gene': 'C1orf109', 'score': 581.46}, {'connected_gene': 'CDCA8', 'score': 550.77}, {'connected_gene': 'SF3A3', 'score': 43.06}, {'connected_gene': 'EPHA10', 'score': 37.91}, {'connected_gene': 'GNL2', 'score': 29.67}, {'connected_gene': 'FTH1P1', 'score': 21.01}, {'connected_gene': 'RSPO1', 'score': 11.01}, {'connected_gene': 'YRDC', 'score': 10.5}, {'connected_gene': 'DNALI1', 'score': 6.4}, {'connected_gene': 'GC01P037645', 'score': 0.25}]
chr1	GH01I038008	38008280	38017539	2.53	[{'connected_gene': 'UTP11', 'score': 550.77}, {'connected_gene': 'SF3A3', 'score': 48.63}, {'connected_gene': 'INPP5B', 'score': 47.92}, {'connected_gene': 'SNIP1', 'score': 37.34}, {'connected_gene': 'C1orf109', 'score': 35.84}, {'connected_gene': 'RNU6-510P', 'score': 12.1}, {'connected_gene': 'FTH1P1', 'score': 10.74}, {'connected_gene': 'RSPO1', 'score': 10.27}, {'connected_gene': 'MTF1', 'score': 10.23}, {'connected_gene': 'ENSG00000230955', 'score': 10.23}, {'connected_gene': 'YRDC', 'score': 10.18}, {'connected_gene': 'C1orf122', 'score': 10.17}, {'connected_gene': 'GNL2', 'score': 9.78}, {'connected_gene': 'CDCA8', 'score': 8.69}, {'connected_gene': 'GC01P038029', 'score': 0.37}]
chr1	GH01I037845	37845201	37847600	1.05	[{'connected_gene': 'MTF1', 'score': 29.85}, {'connected_gene': 'ZC3H12A', 'score': 28.85}, {'connected_gene': 'YRDC', 'score': 13.01}, {'connected_gene': 'C1orf122', 'score': 11.27}, {'connected_gene': 'ENSG00000233728', 'score': 10.5}, {'connected_gene': 'CDCA8', 'score': 9.84}, {'connected_gene': 'C1orf109', 'score': 9.84}, {'connected_gene': 'FHL3', 'score': 5.64}, {'connected_gene': 'SNIP1', 'score': 3.05}, {'connected_gene': 'RPS2P13', 'score': 0.44}]
chr1	GH01I037819	37819949	37820149	0.45	[{'connected_gene': 'MTF1', 'score': 16.12}, {'connected_gene': 'ENSG00000230955', 'score': 11.44}, {'connected_gene': 'CDCA8', 'score': 9.72}, {'connected_gene': 'C1orf109', 'score': 9.72}, {'connected_gene': 'INPP5B', 'score': 9.44}, {'connected_gene': 'ZC3H12A', 'score': 5.59}, {'connected_gene': 'GC01M037827', 'score': 0.77}, {'connected_gene': 'PIR39326', 'score': 0.77}, {'connected_gene': 'PIR53410', 'score': 0.44}]
chr1	GH01I037594	37594334	37596796	2.04	[{'connected_gene': 'GNL2', 'score': 550.77}, {'connected_gene': 'ENSG00000284748', 'score': 550.77}, {'connected_gene': 'DNALI1', 'score': 14.31}, {'connected_gene': 'CDCA8', 'score': 11.11}, {'connected_gene': 'C1orf109', 'score': 11.11}, {'connected_gene': 'MEAF6', 'score': 9.32}, {'connected_gene': 'LINC01137', 'score': 4.37}]
chr1	GH01I037561	37561920	37562049	0.8	[{'connected_gene': 'GNL2', 'score': 11.31}, {'connected_gene': 'CDCA8', 'score': 10.08}, {'connected_gene': 'C1orf109', 'score': 10.08}, {'connected_gene': 'DNALI1', 'score': 0.44}]
chr1	GH01I037537	37537460	37537649	0.57	[{'connected_gene': 'GNL2', 'score': 10.85}, {'connected_gene': 'CDCA8', 'score': 9.52}, {'connected_gene': 'C1orf109', 'score': 9.52}, {'connected_gene': 'FTH1P1', 'score': 0.44}, {'connected_gene': 'LOC105378649', 'score': 0.44}, {'connected_gene': 'SNIP1', 'score': 0.37}]
chr1	GH01I037705	37705109	37705258	0.38	[{'connected_gene': 'EPHA10', 'score': 10.6}, {'connected_gene': 'ENSG00000233728', 'score': 10.15}, {'connected_gene': 'MTF1', 'score': 9.89}, {'connected_gene': 'ENSG00000230955', 'score': 9.88}, {'connected_gene': 'PIR57553', 'score': 0.77}, {'connected_gene': 'GC01P037710', 'score': 0.77}, {'connected_gene': 'CDCA8', 'score': 0.39}]
chr1	GH01I037696	37696744	37698241	0.2	[{'connected_gene': 'EPHA10', 'score': 49.98}, {'connected_gene': 'INPP5B', 'score': 5.33}, {'connected_gene': 'C1orf109', 'score': 5.23}, {'connected_gene': 'CDCA8', 'score': 0.44}, {'connected_gene': 'PIR57553', 'score': 0.39}, {'connected_gene': 'GC01P037710', 'score': 0.39}]
chr1	GH01I037545	37545130	37545378	0.43	[{'connected_gene': 'FTH1P1', 'score': 562.29}, {'connected_gene': 'GC01P037545', 'score': 550.77}, {'connected_gene': 'GC01P037546', 'score': 550.77}, {'connected_gene': 'GNL2', 'score': 35.96}, {'connected_gene': 'SF3A3', 'score': 21.34}, {'connected_gene': 'SNIP1', 'score': 15.7}, {'connected_gene': 'MEAF6', 'score': 11.86}, {'connected_gene': 'INPP5B', 'score': 11.38}, {'connected_gene': 'CDCA8', 'score': 10.17}, {'connected_gene': 'C1orf109', 'score': 10.17}, {'connected_gene': 'ZC3H12A', 'score': 2.5}, {'connected_gene': 'MTF1', 'score': 2.15}]
chr1	GH01I037498	37498708	37500029	0.99	[{'connected_gene': 'MIR5581', 'score': 550.77}, {'connected_gene': 'GNL2', 'score': 17.29}, {'connected_gene': 'DNALI1', 'score': 14.64}, {'connected_gene': 'MEAF6', 'score': 14.08}, {'connected_gene': 'CDCA8', 'score': 9.88}, {'connected_gene': 'C1orf109', 'score': 9.88}, {'connected_gene': 'LINC01137', 'score': 5.3}, {'connected_gene': 'EPHA10', 'score': 5.29}, {'connected_gene': 'PIR46555', 'score': 0.37}]
chr1	GH01I037821	37821486	37821727	0.24	[{'connected_gene': 'GC01M037827', 'score': 550.77}, {'connected_gene': 'PIR39326', 'score': 550.77}, {'connected_gene': 'MTF1', 'score': 43.15}, {'connected_gene': 'ZC3H12A', 'score': 21.26}, {'connected_gene': 'ENSG00000230955', 'score': 11.46}, {'connected_gene': 'CDCA8', 'score': 9.72}, {'connected_gene': 'C1orf109', 'score': 9.72}, {'connected_gene': 'SNIP1', 'score': 2.83}, {'connected_gene': 'YRDC', 'score': 2.62}, {'connected_gene': 'PIR53410', 'score': 0.44}]
chr1	GH01I037544	37544183	37544803	0.47	[{'connected_gene': 'GC01P037545', 'score': 550.77}, {'connected_gene': 'GC01P037546', 'score': 550.77}, {'connected_gene': 'FTH1P1', 'score': 550.77}, {'connected_gene': 'MEAF6', 'score': 25.53}, {'connected_gene': 'GNL2', 'score': 10.93}, {'connected_gene': 'CDCA8', 'score': 10.17}, {'connected_gene': 'C1orf109', 'score': 10.17}, {'connected_gene': 'LINC01137', 'score': 4.5}, {'connected_gene': 'ZC3H12A', 'score': 3.52}, {'connected_gene': 'MTF1', 'score': 2.35}, {'connected_gene': 'SNIP1', 'score': 1.77}, {'connected_gene': 'LOC105378649', 'score': 0.39}]