PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000444040	[[72798429, 72799987], [72842066, 72842187], [72861821, 72861945], [72864500, 72864554], [72866380, 72866535], [72873574, 72873702], [72881519, 72881632], [72890195, 72890350], [72891430, 72891553], [72893509, 72893604], [72897348, 72897566]]	[[72893594, 72893604], [72897348, 72897491]]
ENST00000325599	[[72798429, 72799987], [72842066, 72842187], [72861821, 72861945], [72864500, 72864554], [72866380, 72866535], [72873574, 72873702], [72881519, 72881632], [72890195, 72890350], [72891430, 72891553], [72893509, 72893574], [72897348, 72897631]]	[[72799434, 72799987], [72842066, 72842187], [72861821, 72861945], [72864500, 72864554], [72866380, 72866535], [72873574, 72873702], [72881519, 72881632], [72890195, 72890350], [72891430, 72891553], [72893509, 72893574], [72897348, 72897491]]
ENST00000463369	[[72799109, 72799987], [72842066, 72842187], [72861821, 72861945], [72864500, 72864554], [72866380, 72866535], [72873574, 72873702], [72881519, 72881632], [72890195, 72890350], [72891430, 72891553], [72893509, 72893574], [72895365, 72895514]]	[[72799434, 72799987], [72842066, 72842187], [72861821, 72861945], [72864500, 72864554], [72866380, 72866535], [72873574, 72873702], [72881519, 72881632], [72890195, 72890350], [72891430, 72891553], [72893509, 72893574], [72895365, 72895424]]
ENST00000468371	[[72798427, 72799987], [72842066, 72842187], [72842398, 72844741]]	None
ENST00000475558	[[72858770, 72859103], [72861821, 72861945], [72864500, 72864554], [72866380, 72866535]]	None
ENST00000468347	[[72863647, 72863706], [72864500, 72864554], [72866380, 72866401]]	None
ENST00000482785	[[72881519, 72881632], [72890195, 72890350], [72891430, 72891553], [72893509, 72893574], [72911019, 72911065]]	[[72881519, 72881632], [72890195, 72890350], [72891430, 72891494]]
ENST00000471526	[[72890195, 72890350], [72891430, 72891553], [72897348, 72897623]]	[[72891504, 72891553], [72897348, 72897491]]
NM_018130	[[72798427, 72799987], [72842066, 72842187], [72861821, 72861945], [72864500, 72864554], [72866380, 72866535], [72873574, 72873702], [72881519, 72881632], [72890195, 72890350], [72891430, 72891553], [72893509, 72893574], [72897348, 72897598]]	[[72799434, 72799987], [72842066, 72842187], [72861821, 72861945], [72864500, 72864554], [72866380, 72866535], [72873574, 72873702], [72881519, 72881632], [72890195, 72890350], [72891430, 72891553], [72893509, 72893574], [72897348, 72897491]]

Promoter

Chrom	Start	End	Description
chr3	72897524	72897540	CAGE_peak_2_at_SHQ1_5end
chr3	72897545	72897629	CAGE_peak_1_at_SHQ1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I072886	72886451	72893369	2.42	[{'connected_gene': 'GXYLT2', 'score': 559.38}, {'connected_gene': 'SHQ1', 'score': 12.02}, {'connected_gene': 'RYBP', 'score': 1.94}, {'connected_gene': 'EBLN2', 'score': 1.48}, {'connected_gene': 'LAPTM4BP2', 'score': 0.44}, {'connected_gene': 'ENSG00000276890', 'score': 0.28}]
chr3	GH03I072937	72937897	72939654	1.17	[{'connected_gene': 'GXYLT2', 'score': 14.07}, {'connected_gene': 'SHQ1', 'score': 11.1}, {'connected_gene': 'GC03M072929', 'score': 0.44}, {'connected_gene': 'PPP4R2', 'score': 0.22}]
chr3	GH03I072850	72850298	72851890	0.49	[{'connected_gene': 'GXYLT2', 'score': 0.77}, {'connected_gene': 'SHQ1', 'score': 0.39}]
chr3	GH03I072945	72945400	72945801	0.76	[{'connected_gene': 'GXYLT2', 'score': 12.4}, {'connected_gene': 'PPP4R2', 'score': 11.44}, {'connected_gene': 'SHQ1', 'score': 11.18}, {'connected_gene': 'GC03M072929', 'score': 0.37}]
chr3	GH03I072847	72847283	72849694	2.21	[{'connected_gene': 'SHQ1', 'score': 555.38}, {'connected_gene': 'GXYLT2', 'score': 550.77}, {'connected_gene': 'ENSG00000241537', 'score': 0.18}]
chr3	GH03I072225	72225152	72225385	0.78	[{'connected_gene': 'SHQ1', 'score': 9.72}, {'connected_gene': 'ENSG00000242618', 'score': 0.37}, {'connected_gene': 'LINC00877', 'score': 0.23}]
chr3	GH03I072273	72273169	72275856	1.42	[{'connected_gene': 'SHQ1', 'score': 12.37}, {'connected_gene': 'RYBP', 'score': 10.82}, {'connected_gene': 'EBLN2', 'score': 10.2}, {'connected_gene': 'LINC00877', 'score': 0.77}, {'connected_gene': 'LOC105377158', 'score': 0.29}, {'connected_gene': 'ENSG00000242618', 'score': 0.21}]
chr3	GH03I073579	73579901	73581222	0.96	[{'connected_gene': 'SHQ1', 'score': 6.3}, {'connected_gene': 'GC03M073571', 'score': 0.44}, {'connected_gene': 'PIR59833', 'score': 0.29}, {'connected_gene': 'PDZRN3', 'score': 0.26}]
chr3	GH03I073095	73094841	73095349	0.2	[{'connected_gene': 'SHQ1', 'score': 10.78}, {'connected_gene': 'PPP4R2', 'score': 8.11}, {'connected_gene': 'RNU6-557P', 'score': 0.77}, {'connected_gene': 'RNU2-64P', 'score': 0.37}]
chr3	GH03I072895	72895001	72895400	0.46	[{'connected_gene': 'SHQ1', 'score': 12.01}, {'connected_gene': 'LAPTM4BP2', 'score': 0.39}, {'connected_gene': 'ENSG00000276890', 'score': 0.29}, {'connected_gene': 'GXYLT2', 'score': 0.25}]
chr3	GH03I073094	73094001	73094799	0.8	[{'connected_gene': 'SHQ1', 'score': 10.78}, {'connected_gene': 'RNU6-557P', 'score': 0.77}, {'connected_gene': 'RNU2-64P', 'score': 0.37}]
chr3	GH03I072743	72743676	72744928	0.93	[{'connected_gene': 'SHQ1', 'score': 5.35}, {'connected_gene': 'GC03P072740', 'score': 0.77}, {'connected_gene': 'PIR36711', 'score': 0.44}, {'connected_gene': 'GC03P072751', 'score': 0.44}, {'connected_gene': 'GC03P072750', 'score': 0.44}]
chr3	GH03I072756	72756069	72757868	0.95	[{'connected_gene': 'SHQ1', 'score': 5.99}, {'connected_gene': 'PIR36711', 'score': 0.44}, {'connected_gene': 'GC03P072751', 'score': 0.44}, {'connected_gene': 'GC03P072750', 'score': 0.44}, {'connected_gene': 'ENSG00000241537', 'score': 0.37}]
chr3	GH03I072769	72769472	72769891	0.43	[{'connected_gene': 'SHQ1', 'score': 5.41}, {'connected_gene': 'ENSG00000241537', 'score': 0.77}, {'connected_gene': 'PIR36711', 'score': 0.37}, {'connected_gene': 'GC03P072751', 'score': 0.37}, {'connected_gene': 'GC03P072750', 'score': 0.37}]
chr3	GH03I072745	72745030	72746350	0.91	[{'connected_gene': 'SHQ1', 'score': 5.37}, {'connected_gene': 'PIR36711', 'score': 0.77}, {'connected_gene': 'GC03P072751', 'score': 0.77}, {'connected_gene': 'GC03P072740', 'score': 0.77}, {'connected_gene': 'GC03P072750', 'score': 0.77}]
chr3	GH03I072753	72753151	72754449	0.31	[{'connected_gene': 'SHQ1', 'score': 5.6}, {'connected_gene': 'PIR36711', 'score': 0.77}, {'connected_gene': 'GC03P072751', 'score': 0.77}, {'connected_gene': 'GC03P072750', 'score': 0.77}, {'connected_gene': 'ENSG00000241537', 'score': 0.37}]
chr3	GH03I072766	72766489	72767441	0.31	[{'connected_gene': 'SHQ1', 'score': 5.16}, {'connected_gene': 'ENSG00000241537', 'score': 0.44}, {'connected_gene': 'PIR36711', 'score': 0.37}, {'connected_gene': 'GC03P072751', 'score': 0.37}, {'connected_gene': 'GC03P072750', 'score': 0.37}]
chr3	GH03I073061	73060550	73060719	0.31	[{'connected_gene': 'EBLN2', 'score': 550.77}, {'connected_gene': 'SHQ1', 'score': 11.28}, {'connected_gene': 'GC03P073027', 'score': 0.29}, {'connected_gene': 'PPP4R2', 'score': 0.21}]
chr3	GH03I073060	73060950	73061891	0.7	[{'connected_gene': 'EBLN2', 'score': 550.77}, {'connected_gene': 'SHQ1', 'score': 11.28}, {'connected_gene': 'GC03P073027', 'score': 0.29}, {'connected_gene': 'PPP4R2', 'score': 0.21}]
chr3	GH03I072875	72875983	72876166	0.49	[{'connected_gene': 'EBLN2', 'score': 1.4}, {'connected_gene': 'PSMD12P', 'score': 0.77}, {'connected_gene': 'SHQ1', 'score': 0.39}, {'connected_gene': 'GXYLT2', 'score': 0.31}]
chr3	GH03I072871	72871794	72872683	0.38	[{'connected_gene': 'PSMD12P', 'score': 0.44}, {'connected_gene': 'SHQ1', 'score': 0.39}, {'connected_gene': 'GXYLT2', 'score': 0.34}]
chr3	GH03I072278	72278248	72280362	0.7	[{'connected_gene': 'LINC00877', 'score': 550.77}, {'connected_gene': 'EBLN2', 'score': 12.18}, {'connected_gene': 'RYBP', 'score': 10.83}, {'connected_gene': 'SHQ1', 'score': 10.82}, {'connected_gene': 'LOC105377158', 'score': 0.31}, {'connected_gene': 'ENSG00000242618', 'score': 0.2}]
chr3	GH03I072797	72797321	72799149	0.89	[{'connected_gene': 'RYBP', 'score': 9.72}, {'connected_gene': 'ENSG00000241537', 'score': 0.31}, {'connected_gene': 'GXYLT2', 'score': 0.23}, {'connected_gene': 'SHQ1', 'score': 0.21}]
chr3	GH03I072817	72817090	72817239	0.68	[{'connected_gene': 'RYBP', 'score': 10.9}, {'connected_gene': 'GXYLT2', 'score': 0.29}, {'connected_gene': 'SHQ1', 'score': 0.26}, {'connected_gene': 'ENSG00000241537', 'score': 0.26}]
chr3	GH03I072809	72809713	72811120	0.31	[{'connected_gene': 'RYBP', 'score': 10.75}, {'connected_gene': 'GXYLT2', 'score': 0.28}, {'connected_gene': 'ENSG00000241537', 'score': 0.28}, {'connected_gene': 'SHQ1', 'score': 0.23}]
chr3	GH03I072811	72811690	72811839	0.31	[{'connected_gene': 'RYBP', 'score': 10.75}, {'connected_gene': 'GXYLT2', 'score': 0.28}, {'connected_gene': 'ENSG00000241537', 'score': 0.28}, {'connected_gene': 'SHQ1', 'score': 0.23}]
chr3	GH03I072813	72813463	72813849	0.38	[{'connected_gene': 'RYBP', 'score': 10.9}, {'connected_gene': 'SHQ1', 'score': 2.25}, {'connected_gene': 'GXYLT2', 'score': 0.29}, {'connected_gene': 'ENSG00000241537', 'score': 0.26}]
chr3	GH03I072818	72818028	72823209	1.39	[{'connected_gene': 'RYBP', 'score': 15.12}, {'connected_gene': 'SHQ1', 'score': 5.26}, {'connected_gene': 'PPP4R2', 'score': 1.55}, {'connected_gene': 'GXYLT2', 'score': 0.31}, {'connected_gene': 'ENSG00000241537', 'score': 0.25}]
chr3	GH03I072445	72445000	72449412	2.23	[{'connected_gene': 'RYBP', 'score': 579.84}, {'connected_gene': 'SHQ1', 'score': 12.75}, {'connected_gene': 'LOC105377160', 'score': 0.39}]
chr3	GH03I073055	73055801	73056639	0.76	[{'connected_gene': 'PPP4R2', 'score': 30.63}, {'connected_gene': 'SHQ1', 'score': 11.63}, {'connected_gene': 'RNU2-64P', 'score': 10.63}, {'connected_gene': 'EBLN2', 'score': 0.44}, {'connected_gene': 'GC03P073027', 'score': 0.31}]
chr3	GH03I073070	73070221	73072135	0.63	[{'connected_gene': 'PPP4R2', 'score': 27.08}, {'connected_gene': 'SHQ1', 'score': 11.13}, {'connected_gene': 'GC03P073067', 'score': 0.77}, {'connected_gene': 'GC03P073091', 'score': 0.34}]
chr3	GH03I073568	73568110	73569408	0.2	[{'connected_gene': 'RNU7-119P', 'score': 12.19}, {'connected_gene': 'SHQ1', 'score': 4.94}, {'connected_gene': 'PIR59833', 'score': 0.37}, {'connected_gene': 'GC03M073571', 'score': 0.37}, {'connected_gene': 'LOC101927296', 'score': 0.25}, {'connected_gene': 'PDZRN3', 'score': 0.22}]
chr3	GH03I073571	73571255	73573095	1.2	[{'connected_gene': 'RNU7-119P', 'score': 12.61}, {'connected_gene': 'PDZRN3-AS1', 'score': 10.75}, {'connected_gene': 'PDZRN3', 'score': 10.73}, {'connected_gene': 'SHQ1', 'score': 4.95}, {'connected_gene': 'GC03M073571', 'score': 0.39}, {'connected_gene': 'PIR59833', 'score': 0.34}]
chr3	GH03I072738	72738201	72740796	1.05	[{'connected_gene': 'GC03P072740', 'score': 550.77}, {'connected_gene': 'SHQ1', 'score': 16.23}, {'connected_gene': 'EBLN2', 'score': 10.23}, {'connected_gene': 'RYBP', 'score': 10.18}, {'connected_gene': 'RNA5SP136', 'score': 0.25}]
chr3	GH03I072767	72767764	72768459	0.38	[{'connected_gene': 'ENSG00000241537', 'score': 0.77}, {'connected_gene': 'PIR36711', 'score': 0.37}, {'connected_gene': 'GC03P072751', 'score': 0.37}, {'connected_gene': 'GC03P072750', 'score': 0.37}, {'connected_gene': 'SHQ1', 'score': 0.16}]