PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr18	33647320	33647331	CAGE_peak_3_at_RPRD1A_5end
chr18	33647391	33647402	CAGE_peak_2_at_RPRD1A_5end
chr18	33647487	33647547	CAGE_peak_1_at_RPRD1A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr18	GH18I036403	36403701	36410088	0.46	[{'connected_gene': 'FHOD3', 'score': 11.34}, {'connected_gene': 'RPRD1A', 'score': 9.96}, {'connected_gene': 'GC18P036374', 'score': 0.29}, {'connected_gene': 'LOC105372071', 'score': 0.07}]
chr18	GH18I036527	36527201	36527412	0.45	[{'connected_gene': 'FHOD3', 'score': 1.74}, {'connected_gene': 'RPRD1A', 'score': 1.37}, {'connected_gene': 'LOC105372071', 'score': 0.12}, {'connected_gene': 'GC18P036374', 'score': 0.1}]
chr18	GH18I036075	36075478	36076732	1.06	[{'connected_gene': 'ZNF397', 'score': 19.42}, {'connected_gene': 'ELP2', 'score': 13.71}, {'connected_gene': 'RPRD1A', 'score': 13.25}, {'connected_gene': 'ENSG00000268573', 'score': 12.67}, {'connected_gene': 'MOCOS', 'score': 10.74}, {'connected_gene': 'FHOD3', 'score': 10.42}, {'connected_gene': 'ENSG00000267583', 'score': 10.06}, {'connected_gene': 'C18orf21', 'score': 9.98}, {'connected_gene': 'GC18P036078', 'score': 0.77}]
chr18	GH18I036017	36017601	36018001	0.91	[{'connected_gene': 'C18orf21', 'score': 11.16}, {'connected_gene': 'FHOD3', 'score': 10.65}, {'connected_gene': 'MOCOS', 'score': 10.57}, {'connected_gene': 'GC18M035972', 'score': 0.26}, {'connected_gene': 'RPRD1A', 'score': 0.25}]
chr18	GH18I035967	35967936	35973780	2.1	[{'connected_gene': 'C18orf21', 'score': 561.08}, {'connected_gene': 'LOC105372066', 'score': 560.46}, {'connected_gene': 'ENSG00000278986', 'score': 550.77}, {'connected_gene': 'ENSG00000268573', 'score': 30.01}, {'connected_gene': 'ZNF397', 'score': 21.84}, {'connected_gene': 'ELP2', 'score': 7.43}, {'connected_gene': 'RPRD1A', 'score': 5.36}, {'connected_gene': 'GC18M035972', 'score': 0.77}, {'connected_gene': 'GC18P035965', 'score': 0.44}]
chr18	GH18I036041	36041790	36041849	0.5	[{'connected_gene': 'RPRD1A', 'score': 550.31}, {'connected_gene': 'FHOD3', 'score': 10.51}, {'connected_gene': 'MOCOS', 'score': 10.11}, {'connected_gene': 'GC18M035972', 'score': 0.2}]
chr18	GH18I036065	36065305	36068187	2.03	[{'connected_gene': 'RPRD1A', 'score': 562.71}, {'connected_gene': 'C18orf21', 'score': 10.24}, {'connected_gene': 'LOC105372066', 'score': 8.89}, {'connected_gene': 'GC18M035972', 'score': 0.16}]
chr18	GH18I035861	35861800	35862200	0.43	[{'connected_gene': 'RPRD1A', 'score': 5.41}, {'connected_gene': 'NRBF2P1', 'score': 0.34}, {'connected_gene': 'MIR187', 'score': 0.26}]
chr18	GH18I035848	35848248	35852913	0.56	[{'connected_gene': 'RPRD1A', 'score': 5.11}, {'connected_gene': 'NRBF2P1', 'score': 0.44}, {'connected_gene': 'MIR187', 'score': 0.23}]
chr18	GH18I036096	36096149	36098752	0.71	[{'connected_gene': 'RPRD1A', 'score': 13.19}, {'connected_gene': 'MOCOS', 'score': 10.99}, {'connected_gene': 'FHOD3', 'score': 10.78}, {'connected_gene': 'ELP2', 'score': 6.98}, {'connected_gene': 'GC18M036078', 'score': 0.37}]
chr18	GH18I036098	36098855	36100743	0.62	[{'connected_gene': 'RPRD1A', 'score': 13.07}, {'connected_gene': 'MOCOS', 'score': 11.0}, {'connected_gene': 'FHOD3', 'score': 10.78}, {'connected_gene': 'LOC105372066', 'score': 10.32}, {'connected_gene': 'ELP2', 'score': 5.58}, {'connected_gene': 'GC18M036078', 'score': 0.34}]
chr18	GH18I036101	36101072	36102204	0.49	[{'connected_gene': 'MOCOS', 'score': 11.0}, {'connected_gene': 'FHOD3', 'score': 10.78}, {'connected_gene': 'LOC105372066', 'score': 10.35}, {'connected_gene': 'RPRD1A', 'score': 6.63}, {'connected_gene': 'GC18M036078', 'score': 0.34}, {'connected_gene': 'ELP2', 'score': 0.31}]
chr18	GH18I035825	35825976	35829667	1.23	[{'connected_gene': 'ZNF396', 'score': 6.16}, {'connected_gene': 'RPRD1A', 'score': 4.76}, {'connected_gene': 'C18orf21', 'score': 4.39}, {'connected_gene': 'ZNF24', 'score': 3.65}, {'connected_gene': 'INO80C', 'score': 2.4}, {'connected_gene': 'NRBF2P1', 'score': 0.39}, {'connected_gene': 'ENSG00000267397', 'score': 0.14}]
chr18	GH18I035495	35495482	35498608	2.35	[{'connected_gene': 'INO80C', 'score': 558.31}, {'connected_gene': 'ENSG00000267140', 'score': 550.77}, {'connected_gene': 'ENSG00000268573', 'score': 87.13}, {'connected_gene': 'ZNF397', 'score': 80.97}, {'connected_gene': 'ZSCAN30', 'score': 53.0}, {'connected_gene': 'ELP2', 'score': 48.88}, {'connected_gene': 'RPRD1A', 'score': 29.99}, {'connected_gene': 'C18orf21', 'score': 20.32}, {'connected_gene': 'ZNF271P', 'score': 11.06}, {'connected_gene': 'ZNF396', 'score': 10.37}, {'connected_gene': 'ENSG00000279074', 'score': 0.39}]
chr18	GH18I035949	35949801	35950974	0.98	[{'connected_gene': 'LOC105372066', 'score': 16.53}, {'connected_gene': 'C18orf21', 'score': 11.74}, {'connected_gene': 'RPRD1A', 'score': 4.53}, {'connected_gene': 'GC18P035965', 'score': 0.37}, {'connected_gene': 'MIR3929', 'score': 0.37}]
chr18	GH18I035982	35982103	35984664	0.38	[{'connected_gene': 'LOC105372066', 'score': 11.2}, {'connected_gene': 'C18orf21', 'score': 10.1}, {'connected_gene': 'RPRD1A', 'score': 5.37}, {'connected_gene': 'GC18M035972', 'score': 0.44}]
chr18	GH18I035934	35934058	35934307	0.68	[{'connected_gene': 'MIR3929', 'score': 550.77}, {'connected_gene': 'LOC105372066', 'score': 19.13}, {'connected_gene': 'MIR187', 'score': 11.96}, {'connected_gene': 'C18orf21', 'score': 10.49}, {'connected_gene': 'RPRD1A', 'score': 4.12}, {'connected_gene': 'GC18P035965', 'score': 0.29}]
chr18	GH18I036094	36094224	36095572	0.46	[{'connected_gene': 'ENSG00000268573', 'score': 16.13}, {'connected_gene': 'ZNF397', 'score': 12.09}, {'connected_gene': 'FHOD3', 'score': 10.68}, {'connected_gene': 'MOCOS', 'score': 10.63}, {'connected_gene': 'LOC105372066', 'score': 10.21}, {'connected_gene': 'C18orf21', 'score': 10.0}, {'connected_gene': 'ELP2', 'score': 6.93}, {'connected_gene': 'RPRD1A', 'score': 5.08}, {'connected_gene': 'GC18M036078', 'score': 0.37}]
chr18	GH18I036479	36479821	36483199	0.98	[{'connected_gene': 'ENSG00000267707', 'score': 20.24}, {'connected_gene': 'RPRD1A', 'score': 20.1}, {'connected_gene': 'ELP2', 'score': 12.9}, {'connected_gene': 'KIAA1328', 'score': 9.78}, {'connected_gene': 'GC18P036374', 'score': 0.14}, {'connected_gene': 'FHOD3', 'score': 0.09}, {'connected_gene': 'LOC105372071', 'score': 0.09}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000587563	[[33564349, 33564674], [33565300, 33565349], [33570488, 33570558], [33573064, 33573263]]	[[33573113, 33573263]]
ENST00000585879	[[33564351, 33564491], [33565300, 33565349], [33568694, 33568798], [33570488, 33570558], [33573064, 33573126]]	[[33573113, 33573126]]
ENST00000590898	[[33569786, 33570558], [33573064, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33620769, 33620828], [33647216, 33647493]]	[[33573113, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33620769, 33620812]]
ENST00000399022	[[33569786, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33647216, 33647539]]	[[33573113, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33647216, 33647367]]
ENST00000337059	[[33569848, 33570558], [33573064, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33620769, 33620812]]	[[33573113, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33620769, 33620812]]
ENST00000357384	[[33569848, 33570558], [33573064, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33647216, 33647519]]	[[33573113, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33647216, 33647367]]
ENST00000588737	[[33573002, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33620769, 33620828], [33647216, 33647522]]	[[33573113, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33620769, 33620812]]
ENST00000585953	[[33605560, 33607038], [33607146, 33607273], [33610770, 33610813]]	[[33606838, 33607038], [33607146, 33607273], [33610770, 33610813]]
ENST00000319040	[[33605560, 33605641], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33647216, 33647519]]	[[33605560, 33605641], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33647216, 33647367]]
ENST00000591994	[[33605561, 33607038], [33607146, 33608153]]	None
ENST00000589050	[[33605561, 33605641], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33647216, 33647520]]	[[33605561, 33605641], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33647216, 33647367]]
ENST00000592674	[[33613714, 33613800], [33620769, 33620828], [33642940, 33643038], [33647216, 33647539]]	[[33642967, 33643038], [33647216, 33647367]]
ENST00000588459	[[33632837, 33632883], [33642940, 33643038], [33643955, 33644387]]	None
NM_001303411	[[33569786, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33620769, 33620828], [33647216, 33647557]]	[[33573113, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33620769, 33620812]]
NM_001303412	[[33569786, 33570558], [33573064, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33620769, 33620828], [33647216, 33647557]]	[[33573113, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33620769, 33620812]]
NM_018170	[[33569786, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33647216, 33647557]]	[[33573113, 33573263], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33647216, 33647367]]
NM_001303413	[[33604851, 33605641], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33647216, 33647557]]	[[33605560, 33605641], [33606862, 33607038], [33607146, 33607273], [33610770, 33610868], [33610953, 33611060], [33613670, 33613800], [33647216, 33647367]]