PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000505049	[[159122755, 159122850], [159124794, 159124860], [159132604, 159132726], [159133759, 159133928], [159136342, 159136465]]	[[159133819, 159133928], [159136342, 159136465]]
ENST00000505189	[[159122755, 159122850], [159124794, 159124860], [159132604, 159132726], [159133212, 159133372], [159133759, 159133928], [159136342, 159136465], [159138472, 159138501]]	[[159133819, 159133928], [159136342, 159136465], [159138472, 159138501]]
ENST00000511038	[[159122766, 159122850], [159124771, 159124860], [159132604, 159132726], [159133212, 159133372], [159133759, 159133850]]	[[159133819, 159133850]]
ENST00000508243	[[159131345, 159131738], [159132610, 159132726], [159133759, 159133928], [159136342, 159136465], [159138472, 159138572], [159140461, 159140542], [159154052, 159154134], [159156589, 159156595]]	[[159133819, 159133928], [159136342, 159136465], [159138472, 159138572], [159140461, 159140542], [159154052, 159154134], [159156589, 159156595]]
ENST00000296529	[[159131400, 159131738], [159132604, 159132726], [159133759, 159133928], [159136342, 159136465], [159138472, 159138572], [159140461, 159140542], [159154052, 159154134], [159156589, 159156657], [159158676, 159158795], [159161450, 159161570], [159162660, 159162758], [159165447, 159165501], [159174595, 159176563]]	[[159133819, 159133928], [159136342, 159136465], [159138472, 159138572], [159140461, 159140542], [159154052, 159154134], [159156589, 159156657], [159158676, 159158795], [159161450, 159161570], [159162660, 159162758], [159165447, 159165501], [159174595, 159174679]]
ENST00000512481	[[159131610, 159131738], [159132604, 159132726], [159133212, 159133372], [159133759, 159133928], [159136342, 159136465], [159138472, 159138501]]	[[159133819, 159133928], [159136342, 159136465], [159138472, 159138501]]
ENST00000504569	[[159131635, 159131738], [159133759, 159133928], [159136342, 159136465], [159138472, 159138572], [159140461, 159140542]]	[[159133819, 159133928], [159136342, 159136465], [159138472, 159138572], [159140461, 159140542]]
ENST00000509278	[[159131636, 159131738], [159132604, 159132726], [159133759, 159135168]]	[[159133819, 159134041]]
ENST00000514558	[[159131636, 159133372], [159133759, 159133928], [159136342, 159136465], [159138472, 159138572], [159140461, 159140542], [159154052, 159155542]]	[[159133819, 159133928], [159136342, 159136465], [159138472, 159138572], [159140461, 159140542], [159154052, 159154149]]
ENST00000513744	[[159131637, 159131738], [159132604, 159133058]]	None
ENST00000514346	[[159131637, 159131738], [159132684, 159132726], [159133212, 159133372]]	None
ENST00000503200	[[159131637, 159131738], [159132684, 159132726], [159133759, 159133928], [159136342, 159136465], [159138472, 159138572]]	[[159133819, 159133928], [159136342, 159136465], [159138472, 159138572]]
ENST00000511532	[[159131706, 159131738], [159132604, 159132726], [159133759, 159133928], [159136342, 159136465], [159138472, 159138572], [159140461, 159140542], [159154052, 159154134], [159158676, 159158795], [159161450, 159161570], [159162660, 159162758], [159165447, 159165501], [159174595, 159176356]]	[[159133819, 159133928], [159136342, 159136465], [159138472, 159138572], [159140461, 159140542], [159154052, 159154134], [159158676, 159158766]]
ENST00000502698	[[159132376, 159132726], [159133759, 159133928], [159136342, 159136465]]	[[159133819, 159133928], [159136342, 159136465]]
ENST00000514971	[[159132417, 159132487], [159132604, 159132726], [159133759, 159133928], [159136342, 159136465], [159138472, 159138513]]	[[159133819, 159133928], [159136342, 159136465], [159138472, 159138513]]
ENST00000503404	[[159154187, 159156824], [159158676, 159158795], [159161450, 159161570], [159162660, 159162758], [159165447, 159165501], [159174595, 159176439]]	None
ENST00000512272	[[159158488, 159158795], [159161450, 159161570], [159162660, 159162758], [159165447, 159165480]]	None
NM_018342	[[159131400, 159131738], [159132604, 159132726], [159133759, 159133928], [159136342, 159136465], [159138472, 159138572], [159140461, 159140542], [159154052, 159154134], [159156589, 159156657], [159158676, 159158795], [159161450, 159161570], [159162660, 159162758], [159165447, 159165501], [159174595, 159176439]]	[[159133819, 159133928], [159136342, 159136465], [159138472, 159138572], [159140461, 159140542], [159154052, 159154134], [159156589, 159156657], [159158676, 159158795], [159161450, 159161570], [159162660, 159162758], [159165447, 159165501], [159174595, 159174679]]

Promoter

Chrom	Start	End	Description
chr4	159122728	159122766	CAGE_peak_9_at_TMEM144_5end
chr4	159131359	159131372	CAGE_peak_11_at_TMEM144_5end
chr4	159131486	159131501	CAGE_peak_8_at_TMEM144_5end
chr4	159131547	159131561	CAGE_peak_5_at_TMEM144_5end
chr4	159131566	159131577	CAGE_peak_6_at_TMEM144_5end
chr4	159131578	159131589	CAGE_peak_7_at_TMEM144_5end
chr4	159131596	159131623	CAGE_peak_3_at_TMEM144_5end
chr4	159131630	159131647	CAGE_peak_1_at_TMEM144_5end
chr4	159131661	159131687	CAGE_peak_2_at_TMEM144_5end
chr4	159131691	159131713	CAGE_peak_4_at_TMEM144_5end
chr4	159132652	159132663	CAGE_peak_13_at_TMEM144_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I158312	158312891	158316894	0.82	[{'connected_gene': 'RXFP1', 'score': 550.77}, {'connected_gene': 'LOC646890', 'score': 6.92}, {'connected_gene': 'TMEM144', 'score': 4.3}]
chr4	GH04I158259	158259718	158262115	0.52	[{'connected_gene': 'TMEM144', 'score': 4.23}, {'connected_gene': 'LOC646890', 'score': 0.44}, {'connected_gene': 'GC04P158212', 'score': 0.25}]
chr4	GH04I158248	158248119	158248403	0.45	[{'connected_gene': 'TMEM144', 'score': 12.11}, {'connected_gene': 'LOC646890', 'score': 0.34}, {'connected_gene': 'GC04P158212', 'score': 0.28}]
chr4	GH04I158215	158215655	158223093	0.43	[{'connected_gene': 'TMEM144', 'score': 5.01}, {'connected_gene': 'GC04P158212', 'score': 0.44}, {'connected_gene': 'LOC646890', 'score': 0.23}]
chr4	GH04I158249	158249194	158255326	0.56	[{'connected_gene': 'TMEM144', 'score': 7.14}, {'connected_gene': 'LOC646890', 'score': 6.68}, {'connected_gene': 'GC04P158212', 'score': 0.28}]
chr4	GH04I158208	158208764	158212154	2.42	[{'connected_gene': 'TMEM144', 'score': 555.41}, {'connected_gene': 'C4orf46', 'score': 10.72}, {'connected_gene': 'GC04P158212', 'score': 0.77}]
chr4	GH04I158019	158019461	158021996	1.25	[{'connected_gene': 'TMEM144', 'score': 1.65}, {'connected_gene': 'LOC105377509', 'score': 0.28}, {'connected_gene': 'ENSG00000250475', 'score': 0.23}]
chr4	GH04I158191	158191608	158191844	0.42	[{'connected_gene': 'TMEM144', 'score': 3.22}, {'connected_gene': 'ENSG00000250604', 'score': 0.44}, {'connected_gene': 'NUDT19P5', 'score': 0.44}, {'connected_gene': 'FAM198B-AS1', 'score': 0.34}]
chr4	GH04I158189	158189495	158190561	0.2	[{'connected_gene': 'TMEM144', 'score': 7.39}, {'connected_gene': 'NUDT19P5', 'score': 0.44}, {'connected_gene': 'ENSG00000250604', 'score': 0.39}, {'connected_gene': 'FAM198B-AS1', 'score': 0.37}]
chr4	GH04I158226	158226713	158246266	0.75	[{'connected_gene': 'PPID', 'score': 10.54}, {'connected_gene': 'TMEM144', 'score': 6.98}, {'connected_gene': 'FAM198B-AS1', 'score': 5.53}, {'connected_gene': 'LOC646890', 'score': 4.37}, {'connected_gene': 'GC04P158212', 'score': 0.34}]
chr4	GH04I158006	158006108	158010598	0.95	[{'connected_gene': 'FAM198B-AS1', 'score': 24.13}, {'connected_gene': 'TMEM144', 'score': 7.47}, {'connected_gene': 'FAM198B', 'score': 5.97}, {'connected_gene': 'ENSG00000250475', 'score': 0.28}, {'connected_gene': 'LOC105377509', 'score': 0.23}]
chr4	GH04I158163	158163308	158165634	1.06	[{'connected_gene': 'FAM198B-AS1', 'score': 31.88}, {'connected_gene': 'TMEM144', 'score': 8.34}, {'connected_gene': 'FAM198B', 'score': 0.44}, {'connected_gene': 'GC04P158124', 'score': 0.28}]
chr4	GH04I158158	158158607	158163128	1.33	[{'connected_gene': 'FAM198B-AS1', 'score': 31.32}, {'connected_gene': 'TMEM144', 'score': 8.32}, {'connected_gene': 'FAM198B', 'score': 0.39}, {'connected_gene': 'GC04P158124', 'score': 0.28}]
chr4	GH04I158155	158155114	158157962	0.71	[{'connected_gene': 'FAM198B-AS1', 'score': 57.46}, {'connected_gene': 'TMEM144', 'score': 14.33}, {'connected_gene': 'FAM198B', 'score': 0.37}, {'connected_gene': 'GC04P158124', 'score': 0.29}]
chr4	GH04I158119	158119908	158122957	0.72	[{'connected_gene': 'FAM198B-AS1', 'score': 34.21}, {'connected_gene': 'TMEM144', 'score': 6.13}, {'connected_gene': 'GC04P158124', 'score': 0.77}, {'connected_gene': 'ENSG00000280140', 'score': 0.44}]
chr4	GH04I158168	158168000	158175200	2.43	[{'connected_gene': 'FAM198B-AS1', 'score': 609.98}, {'connected_gene': 'FAM198B', 'score': 552.78}, {'connected_gene': 'TMEM144', 'score': 14.31}]
chr4	GH04I158212	158212530	158214172	0.2	[{'connected_gene': 'GC04P158212', 'score': 550.77}, {'connected_gene': 'TMEM144', 'score': 4.66}, {'connected_gene': 'LOC646890', 'score': 0.22}]
chr4	GH04I158214	158214316	158214816	0.2	[{'connected_gene': 'GC04P158212', 'score': 550.77}, {'connected_gene': 'TMEM144', 'score': 0.39}, {'connected_gene': 'LOC646890', 'score': 0.22}]
chr4	GH04I158201	158201601	158201800	0.76	[{'connected_gene': 'ENSG00000250604', 'score': 550.77}, {'connected_gene': 'TMEM144', 'score': 550.77}, {'connected_gene': 'GC04P158212', 'score': 0.39}, {'connected_gene': 'FAM198B-AS1', 'score': 0.29}]