PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr14	69865077	69865125	CAGE_peak_2_at_SLC39A9_5end
chr14	69865128	69865143	CAGE_peak_4_at_SLC39A9_5end
chr14	69865401	69865426	CAGE_peak_1_at_SLC39A9_5end
chr14	69865697	69865733	CAGE_peak_5_at_SLC39A9_5end
chr14	69926280	69926303	CAGE_peak_3_at_SLC39A9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I069464	69464194	69465705	0.46	[{'connected_gene': 'GALNT16', 'score': 20.93}, {'connected_gene': 'SLC39A9', 'score': 10.88}, {'connected_gene': 'ERH', 'score': 10.88}, {'connected_gene': 'SRSF5', 'score': 9.82}, {'connected_gene': 'SMOC1', 'score': 4.69}, {'connected_gene': 'PLEKHD1', 'score': 0.37}]
chr14	GH14I069423	69423921	69425119	0.67	[{'connected_gene': 'GALNT16', 'score': 20.45}, {'connected_gene': 'SLC39A9', 'score': 11.72}, {'connected_gene': 'ERH', 'score': 11.72}, {'connected_gene': 'PLEKHD1', 'score': 0.21}]
chr14	GH14I069376	69376564	69376733	0.49	[{'connected_gene': 'GALNT16', 'score': 11.2}, {'connected_gene': 'GC14P069373', 'score': 0.77}, {'connected_gene': 'SLC39A9', 'score': 0.34}]
chr14	GH14I069439	69439601	69440400	0.46	[{'connected_gene': 'SLC39A9', 'score': 15.98}, {'connected_gene': 'GALNT16', 'score': 10.08}, {'connected_gene': 'PLEKHD1', 'score': 0.26}, {'connected_gene': 'ERH', 'score': 0.26}]
chr14	GH14I069501	69501172	69502047	0.38	[{'connected_gene': 'SLC39A9', 'score': 4.59}, {'connected_gene': 'PLEKHD1', 'score': 0.37}, {'connected_gene': 'GC14M069555', 'score': 0.23}]
chr14	GH14I069446	69446871	69447119	0.22	[{'connected_gene': 'SLC39A9', 'score': 18.96}, {'connected_gene': 'ERH', 'score': 11.06}, {'connected_gene': 'GALNT16', 'score': 10.7}, {'connected_gene': 'PLEKHD1', 'score': 0.28}]
chr14	GH14I069402	69401800	69402001	0.68	[{'connected_gene': 'SLC39A9', 'score': 0.77}, {'connected_gene': 'ERH', 'score': 0.77}, {'connected_gene': 'PLEKHD1', 'score': 0.18}]
chr14	GH14I069343	69343144	69343153	0.52	[{'connected_gene': 'SLC39A9', 'score': 11.6}, {'connected_gene': 'ERH', 'score': 11.59}, {'connected_gene': 'ENSG00000280073', 'score': 0.39}, {'connected_gene': 'LOC105370549', 'score': 0.26}, {'connected_gene': 'GALNT16', 'score': 0.18}]
chr14	GH14I069346	69346824	69346973	0.52	[{'connected_gene': 'SLC39A9', 'score': 11.6}, {'connected_gene': 'ERH', 'score': 11.6}, {'connected_gene': 'ENSG00000280073', 'score': 0.39}, {'connected_gene': 'LOC105370549', 'score': 0.25}, {'connected_gene': 'GALNT16', 'score': 0.17}]
chr14	GH14I069460	69460184	69460393	0.76	[{'connected_gene': 'PLEKHD1', 'score': 11.75}, {'connected_gene': 'GALNT16', 'score': 11.47}, {'connected_gene': 'SLC39A9', 'score': 10.88}, {'connected_gene': 'ERH', 'score': 10.88}]
chr14	GH14I069401	69401400	69401601	0.61	[{'connected_gene': 'ERH', 'score': 16.03}, {'connected_gene': 'SRSF5', 'score': 10.6}, {'connected_gene': 'GALNT16', 'score': 9.57}, {'connected_gene': 'SLC39A9', 'score': 0.77}, {'connected_gene': 'PLEKHD1', 'score': 0.18}]
chr14	GH14I069267	69267195	69269774	0.89	[{'connected_gene': 'ERH', 'score': 24.56}, {'connected_gene': 'SRSF5', 'score': 23.51}, {'connected_gene': 'RPL7AP6', 'score': 14.93}, {'connected_gene': 'DDX18P1', 'score': 12.83}, {'connected_gene': 'SUSD6', 'score': 12.23}, {'connected_gene': 'DCAF5', 'score': 10.88}, {'connected_gene': 'EXD2', 'score': 10.54}, {'connected_gene': 'SLC39A9', 'score': 10.33}, {'connected_gene': 'GALNT16', 'score': 9.34}, {'connected_gene': 'ACTN1', 'score': 4.64}, {'connected_gene': 'ENSG00000258520', 'score': 0.44}, {'connected_gene': 'GC14M069298', 'score': 0.29}]
chr14	GH14I069396	69396660	69401201	2.07	[{'connected_gene': 'ERH', 'score': 566.03}, {'connected_gene': 'SLC39A9', 'score': 550.77}, {'connected_gene': 'SRSF5', 'score': 51.7}, {'connected_gene': 'DDX18P1', 'score': 19.5}, {'connected_gene': 'DCAF5', 'score': 15.3}, {'connected_gene': 'RPL7AP6', 'score': 10.2}, {'connected_gene': 'GALNT16', 'score': 10.09}, {'connected_gene': 'PLEKHD1', 'score': 6.01}]
chr14	GH14I069298	69298884	69299033	0.31	[{'connected_gene': 'LOC105370549', 'score': 550.77}, {'connected_gene': 'GC14M069298', 'score': 550.77}, {'connected_gene': 'GALNT16', 'score': 17.06}, {'connected_gene': 'SLC39A9', 'score': 10.24}, {'connected_gene': 'ERH', 'score': 10.24}]
chr14	GH14I069357	69357394	69358559	0.73	[{'connected_gene': 'ENSG00000280073', 'score': 550.77}, {'connected_gene': 'SLC39A9', 'score': 7.85}, {'connected_gene': 'PIR43347', 'score': 0.77}, {'connected_gene': 'GALNT16', 'score': 0.15}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000556125	[[69864731, 69865167], [69890810, 69890919], [69908548, 69908689], [69908785, 69908983], [69919957, 69920017]]	None
ENST00000555245	[[69865102, 69865320], [69890810, 69890919], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69925795]]	None
ENST00000538956	[[69865106, 69865167], [69890810, 69890919], [69908548, 69908689], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69925544]]	None
ENST00000556605	[[69865406, 69866182], [69890810, 69890919], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69928413, 69929105]]	[[69866086, 69866182], [69890810, 69890919], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69928413, 69928419]]
ENST00000336643	[[69865408, 69866182], [69890810, 69890919], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69927268]]	[[69866086, 69866182], [69890810, 69890919], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69925310]]
ENST00000031146	[[69865408, 69866182], [69890810, 69890919], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69929098]]	[[69866086, 69866182], [69890810, 69890919], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69925310]]
ENST00000554059	[[69865424, 69866182], [69890810, 69890919], [69895278, 69896174]]	None
ENST00000555840	[[69865454, 69866182], [69890810, 69890919], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69925446], [69928413, 69929098]]	[[69866086, 69866182], [69890810, 69890919], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69925310]]
ENST00000557046	[[69866086, 69866182], [69890810, 69890919], [69908785, 69908983], [69921528, 69921614], [69922448, 69922583], [69925079, 69925310]]	[[69866086, 69866182], [69890810, 69890919], [69908785, 69908983], [69921528, 69921614], [69922448, 69922583], [69925079, 69925310]]
ENST00000554023	[[69921417, 69921614], [69922448, 69922583], [69925079, 69925260]]	None
NM_001252152	[[69865095, 69865167], [69890810, 69890919], [69908548, 69908689], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69929107]]	[[69908934, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69925310]]
NM_001252151	[[69865095, 69865320], [69890810, 69890919], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69929107]]	[[69908934, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69925310]]
NM_001330185	[[69865384, 69866182], [69890810, 69890919], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69929107]]	[[69866086, 69866182], [69890810, 69890919], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69925310]]
NM_001252148	[[69865384, 69866182], [69890810, 69890919], [69908785, 69908983], [69921528, 69921614], [69922448, 69922583], [69925079, 69929107]]	[[69866086, 69866182], [69890810, 69890919], [69908785, 69908983], [69921528, 69921614], [69922448, 69922583], [69925079, 69925310]]
NM_001252150	[[69865384, 69866182], [69890810, 69890919], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69928413, 69929107]]	[[69866086, 69866182], [69890810, 69890919], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69928413, 69928419]]
NM_018375	[[69865384, 69866182], [69890810, 69890919], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69929107]]	[[69866086, 69866182], [69890810, 69890919], [69908785, 69908983], [69919957, 69920026], [69921528, 69921614], [69922448, 69922583], [69925079, 69925310]]